University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P0ADK6
Original Database ID ref NP_418051.1
Organism Escherichia coli, Shigella sonnei, etc.
Annotation recname: full=protein yiba;
Sequence Length 280

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region5-280
Protein Length280
Template PDB Code1oyzA
Template Region5-280
Sequence Identity100%
E-Value0
GA3411
MPQS2.20061
z-DOPE-1.35
TSVMod MethodMSALL
TSVMod RMSD1.834
TSVMod NO350.895
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1oyzx-ray structure of yiba_ecoli northeast structural genomics consortium target et31. ; PFAM: PF03130
DBALI1oyzA 
CATH1.25.10.10 Domain: 1oyzA00 Leucine-rich Repeat Variant (100%)
JenaImageLibrary1oyz 
Target Sequence
UniProtKBK3IV99SubName: Full=Protein yibA;
InterProK3IV99 
PFAMK3IV99 
ProdomK3IV99 
UniProtKBA0A074IX55SubName: Full=Protein yibA {ECO:0000313|EMBL:KEO06514.1};
InterProA0A074IX55 
PFAMA0A074IX55 
ProdomA0A074IX55 
UniProtKBA0A080EMC3SubName: Full=Protein yibA {ECO:0000313|EMBL:KEN45076.1};
InterProA0A080EMC3 
PFAMA0A080EMC3 
ProdomA0A080EMC3 
UniProtKBA0A080HX34SubName: Full=Protein yibA {ECO:0000313|EMBL:KEO21521.1};
InterProA0A080HX34 
PFAMA0A080HX34 
ProdomA0A080HX34 
UniProtKBA0A0E0U690SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE58899.1};
InterProA0A0E0U690 
PFAMA0A0E0U690 
ProdomA0A0E0U690 
UniProtKBA0A0E1M301SubName: Full=Putative lyase containing HEAT-repeat protein {ECO:0000313|EMBL:AJF58396.1};
InterProA0A0E1M301 
PFAMA0A0E1M301 
ProdomA0A0E1M301 
UniProtKBA0A0E3MY67SubName: Full=Protein YibA {ECO:0000313|EMBL:AKA92779.1};
InterProA0A0E3MY67 
PFAMA0A0E3MY67 
ProdomA0A0E3MY67 
UniProtKBG0F2T1SubName: Full=PBS lyase HEAT-like repeat family protein {ECO:0000313|EMBL:AEJ59003.1};
InterProG0F2T1 
PFAMG0F2T1 
ProdomG0F2T1 
UniProtKBG2F9C6SubName: Full=Putative lyase;
InterProG2F9C6 
PFAMG2F9C6 
ProdomG2F9C6 
UniProtKBG2B173SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProG2B173 
PFAMG2B173 
ProdomG2B173 
UniProtKBG5U497SubName: Full=Protein yibA;
InterProG5U497 
PFAMG5U497 
ProdomG5U497 
UniProtKBA0A073WAJ1SubName: Full=Protein yibA {ECO:0000313|EMBL:KEL83394.1};
InterProA0A073WAJ1 
PFAMA0A073WAJ1 
ProdomA0A073WAJ1 
UniProtKBA0A073SZZ4SubName: Full=Protein yibA {ECO:0000313|EMBL:KEL18796.1};
InterProA0A073SZZ4 
PFAMA0A073SZZ4 
ProdomA0A073SZZ4 
UniProtKBE9Y5N4SubName: Full=GyibA;
InterProE9Y5N4 
PFAME9Y5N4 
ProdomE9Y5N4 
UniProtKBC8TME0SubName: Full=Lyase containing HEAT-repeat {ECO:0000313|EMBL:BAI28161.1};
InterProC8TME0 
PFAMC8TME0 
ProdomC8TME0 
UniProtKBC8UIY2SubName: Full=Lyase containing HEAT-repeat {ECO:0000313|EMBL:BAI38176.1};
InterProC8UIY2 
PFAMC8UIY2 
ProdomC8UIY2 
UniProtKBK5GFK5SubName: Full=Protein yibA;
InterProK5GFK5 
PFAMK5GFK5 
ProdomK5GFK5 
UniProtKBD7XWS7SubName: Full=PBS lyase HEAT-like repeat protein {ECO:0000313|EMBL:EFJ84177.1};
InterProD7XWS7 
PFAMD7XWS7 
ProdomD7XWS7 
UniProtKBK5BYK0SubName: Full=PBS lyase HEAT-like repeat protein {ECO:0000313|EMBL:EKJ81176.1};
InterProK5BYK0 
PFAMK5BYK0 
ProdomK5BYK0 
UniProtKBL1VWP6SubName: Full=Protein yibA;
InterProL1VWP6 
PFAML1VWP6 
ProdomL1VWP6 
UniProtKBE1J534SubName: Full=PBS lyase HEAT-like repeat protein {ECO:0000313|EMBL:EFK69130.1};
InterProE1J534 
PFAME1J534 
ProdomE1J534 
UniProtKBL1W152SubName: Full=Protein yibA;
InterProL1W152 
PFAML1W152 
ProdomL1W152 
UniProtKBE7UGP8SubName: Full=Putative uncharacterized protein;
InterProE7UGP8 
PFAME7UGP8 
ProdomE7UGP8 
UniProtKBI4J5C3SubName: Full=Protein yibA {ECO:0000313|EMBL:EIF84432.1};
InterProI4J5C3 
PFAMI4J5C3 
ProdomI4J5C3 
UniProtKBG1ZQH2SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProG1ZQH2 
PFAMG1ZQH2 
ProdomG1ZQH2 
UniProtKBF9R131SubName: Full=Putative lyase;
InterProF9R131 
PFAMF9R131 
ProdomF9R131 
UniProtKBA8A654SubName: Full=PBS lyase HEAT-like repeat protein;
InterProA8A654 
PFAMA8A654 
ProdomA8A654 
UniProtKBB1IZJ9SubName: Full=PBS lyase HEAT domain protein repeat-containing protein;
InterProB1IZJ9 
PFAMB1IZJ9 
ProdomB1IZJ9 
UniProtKBI2UCK3SubName: Full=PBS lyase HEAT-like repeat protein {ECO:0000313|EMBL:EIH75929.1};
InterProI2UCK3 
PFAMI2UCK3 
ProdomI2UCK3 
UniProtKBG5UY64SubName: Full=Protein yibA;
InterProG5UY64 
PFAMG5UY64 
ProdomG5UY64 
UniProtKBB3IIR7SubName: Full=PBS lyase HEAT-like repeat protein;
InterProB3IIR7 
PFAMB3IIR7 
ProdomB3IIR7 
UniProtKBK0AFY6SubName: Full=Putative lyase;
InterProK0AFY6 
PFAMK0AFY6 
ProdomK0AFY6 
UniProtKBC4ZXI5SubName: Full=Lyase containing HEAT-repeat protein;
InterProC4ZXI5 
PFAMC4ZXI5 
ProdomC4ZXI5 
UniProtKBA0A026GMU3SubName: Full=Lyase {ECO:0000313|EMBL:EYY71836.1};
InterProA0A026GMU3 
PFAMA0A026GMU3 
ProdomA0A026GMU3 
UniProtKBA0A027TCA6SubName: Full=Lyase {ECO:0000313|EMBL:EZD23013.1};
InterProA0A027TCA6 
PFAMA0A027TCA6 
ProdomA0A027TCA6 
UniProtKBA0A027YWF2SubName: Full=Lyase {ECO:0000313|EMBL:EZD91051.1};
InterProA0A027YWF2 
PFAMA0A027YWF2 
ProdomA0A027YWF2 
UniProtKBI2UTI3SubName: Full=PBS lyase HEAT-like repeat protein;
InterProI2UTI3 
PFAMI2UTI3 
ProdomI2UTI3 
UniProtKBI2X6J8SubName: Full=PBS lyase HEAT-like repeat protein {ECO:0000313|EMBL:EII44618.1};
InterProI2X6J8 
PFAMI2X6J8 
ProdomI2X6J8 
UniProtKBH5M7H8SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProH5M7H8 
PFAMH5M7H8 
ProdomH5M7H8 
UniProtKBG5WKF9SubName: Full=Protein yibA;
InterProG5WKF9 
PFAMG5WKF9 
ProdomG5WKF9 
UniProtKBG5X050SubName: Full=Protein yibA;
InterProG5X050 
PFAMG5X050 
ProdomG5X050 
UniProtKBG5VVN4SubName: Full=Protein yibA;
InterProG5VVN4 
PFAMG5VVN4 
ProdomG5VVN4 
UniProtKBH4XS71SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProH4XS71 
PFAMH4XS71 
ProdomH4XS71 
UniProtKBH4XBD0SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProH4XBD0 
PFAMH4XBD0 
ProdomH4XBD0 
UniProtKBH5A3P5SubName: Full=PBS lyase HEAT-like repeat family protein {ECO:0000313|EMBL:EHW11452.1};
InterProH5A3P5 
PFAMH5A3P5 
ProdomH5A3P5 
UniProtKBH1FM90SubName: Full=Protein yibA;
InterProH1FM90 
PFAMH1FM90 
ProdomH1FM90 
UniProtKBG5VGK2SubName: Full=Protein yibA;
InterProG5VGK2 
PFAMG5VGK2 
ProdomG5VGK2 
UniProtKBI0ZYC9SubName: Full=PBS lyase HEAT-like repeat protein;
InterProI0ZYC9 
PFAMI0ZYC9 
ProdomI0ZYC9 
UniProtKBH5MM70SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProH5MM70 
PFAMH5MM70 
ProdomH5MM70 
UniProtKBA0A028BKB2SubName: Full=Lyase {ECO:0000313|EMBL:EZE23628.1};
InterProA0A028BKB2 
PFAMA0A028BKB2 
ProdomA0A028BKB2 
UniProtKBC6EE81SubName: Full=PBS lyase HEAT domain protein repeat-containing protein {ECO:0000313|EMBL:ACT27213.1};
InterProC6EE81 
PFAMC6EE81 
ProdomC6EE81 
UniProtKBA0A029K618SubName: Full=Protein yibA {ECO:0000313|EMBL:EZJ68554.1};
InterProA0A029K618 
PFAMA0A029K618 
ProdomA0A029K618 
UniProtKBL1VTP4SubName: Full=Protein yibA;
InterProL1VTP4 
PFAML1VTP4 
ProdomL1VTP4 
UniProtKBA0A070U707SubName: Full=Protein yibA {ECO:0000313|EMBL:KDX38006.1};
InterProA0A070U707 
PFAMA0A070U707 
ProdomA0A070U707 
UniProtKBA0A080FC51SubName: Full=Protein yibA {ECO:0000313|EMBL:KEN59261.1};
InterProA0A080FC51 
PFAMA0A080FC51 
ProdomA0A080FC51 
UniProtKBG1ZBE7SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProG1ZBE7 
PFAMG1ZBE7 
ProdomG1ZBE7 
UniProtKBG5UEL3SubName: Full=Protein yibA;
InterProG5UEL3 
PFAMG5UEL3 
ProdomG5UEL3 
UniProtKBG5Y8X1SubName: Full=Protein yibA;
InterProG5Y8X1 
PFAMG5Y8X1 
ProdomG5Y8X1 
UniProtKBH5LTE2SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProH5LTE2 
PFAMH5LTE2 
ProdomH5LTE2 
UniProtKBI2T6H0SubName: Full=PBS lyase HEAT-like repeat protein;
InterProI2T6H0 
PFAMI2T6H0 
ProdomI2T6H0 
UniProtKBF4M718SubName: Full=Putative uncharacterized protein;
InterProF4M718 
PFAMF4M718 
ProdomF4M718 
UniProtKBC1NFP5SubName: Full=YibA;
InterProC1NFP5 
PFAMC1NFP5 
ProdomC1NFP5 
UniProtKBK3S046SubName: Full=Protein yibA {ECO:0000313|EMBL:EKJ29842.1};
InterProK3S046 
PFAMK3S046 
ProdomK3S046 
UniProtKBJ7R7J1SubName: Full=Lyase {ECO:0000313|EMBL:AKN49458.1};SubName: Full=Protein YibA {ECO:0000313|EMBL:AJE58159.1};SubName: Full=Putative lyase containing HEAT-repeat {ECO:0000313|EMBL:CCQ31168.2};SubName: Fu
InterProJ7R7J1 
PFAMJ7R7J1 
ProdomJ7R7J1 
UniProtKBA0A029LTM4SubName: Full=Protein yibA {ECO:0000313|EMBL:EZJ89065.1};
InterProA0A029LTM4 
PFAMA0A029LTM4 
ProdomA0A029LTM4 
UniProtKBJ2ED99SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProJ2ED99 
PFAMJ2ED99 
ProdomJ2ED99 
UniProtKBA0A069X236SubName: Full=Protein yibA {ECO:0000313|EMBL:KDU18371.1};
InterProA0A069X236 
PFAMA0A069X236 
ProdomA0A069X236 
UniProtKBG5WC96SubName: Full=Protein yibA;
InterProG5WC96 
PFAMG5WC96 
ProdomG5WC96 
UniProtKBB3X807SubName: Full=PBS lyase HEAT-like repeat protein;
InterProB3X807 
PFAMB3X807 
ProdomB3X807 
UniProtKBC9QVE9SubName: Full=PBS lyase HEAT domain protein repeat-containing protein;SubName: Full=Uncharacterized protein;
InterProC9QVE9 
PFAMC9QVE9 
ProdomC9QVE9 
UniProtKBA0A069XIQ6SubName: Full=Protein yibA {ECO:0000313|EMBL:KDU29009.1};
InterProA0A069XIQ6 
PFAMA0A069XIQ6 
ProdomA0A069XIQ6 
UniProtKBA0A0G3HR53SubName: Full=Putative lyase containing HEAT-repeat protein {ECO:0000313|EMBL:AKK15751.1};
InterProA0A0G3HR53 
PFAMA0A0G3HR53 
ProdomA0A0G3HR53 
UniProtKBG5Y386SubName: Full=Protein yibA;
InterProG5Y386 
PFAMG5Y386 
ProdomG5Y386 
UniProtKBI2S889SubName: Full=PBS lyase HEAT-like repeat protein;
InterProI2S889 
PFAMI2S889 
ProdomI2S889 
UniProtKBC5WAG9SubName: Full=PBS lyase HEAT domain protein repeat-containing protein {ECO:0000313|EMBL:ACT27213.1};
InterProC5WAG9 
PFAMC5WAG9 
ProdomC5WAG9 
UniProtKBC6UHA9SubName: Full=Lyase containing HEAT-repeat protein;
InterProC6UHA9 
PFAMC6UHA9 
ProdomC6UHA9 
UniProtKBI4QT21SubName: Full=Putative lyase;
InterProI4QT21 
PFAMI4QT21 
ProdomI4QT21 
UniProtKBG5XJ50SubName: Full=Protein yibA;
InterProG5XJ50 
PFAMG5XJ50 
ProdomG5XJ50 
UniProtKBH4Y7Y4SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProH4Y7Y4 
PFAMH4Y7Y4 
ProdomH4Y7Y4 
UniProtKBH4YNG8SubName: Full=Protein yibA;
InterProH4YNG8 
PFAMH4YNG8 
ProdomH4YNG8 
UniProtKBH9UYE7SubName: Full=Protein yibA {ECO:0000313|EMBL:AFG42540.1};
InterProH9UYE7 
PFAMH9UYE7 
ProdomH9UYE7 
UniProtKBI2PGC3SubName: Full=Protein yibA;
InterProI2PGC3 
PFAMI2PGC3 
ProdomI2PGC3 
UniProtKBA7ZTE3SubName: Full=PBS lyase HEAT-like repeat protein {ECO:0000313|EMBL:ABV19911.1};
InterProA7ZTE3 
PFAMA7ZTE3 
ProdomA7ZTE3 
UniProtKBI2ZQ16SubName: Full=PBS lyase HEAT-like repeat protein;
InterProI2ZQ16 
PFAMI2ZQ16 
ProdomI2ZQ16 
UniProtKBB1X8K8SubName: Full=Lyase containing HEAT-repeat;
InterProB1X8K8 
PFAMB1X8K8 
ProdomB1X8K8 
UniProtKBJ9ZDW9SubName: Full=Putative lyase;
InterProJ9ZDW9 
PFAMJ9ZDW9 
ProdomJ9ZDW9 
UniProtKBI6FU26SubName: Full=Protein yibA;
InterProI6FU26 
PFAMI6FU26 
ProdomI6FU26 
UniProtKBF4SQZ1SubName: Full=Protein YibA {ECO:0000313|EMBL:EGI08830.1};
InterProF4SQZ1 
PFAMF4SQZ1 
ProdomF4SQZ1 
UniProtKBG5TP63SubName: Full=Protein yibA;
InterProG5TP63 
PFAMG5TP63 
ProdomG5TP63 
UniProtKBG5T4Z8SubName: Full=Protein yibA;
InterProG5T4Z8 
PFAMG5T4Z8 
ProdomG5T4Z8 
UniProtKBD6I2K7SubName: Full=YibA {ECO:0000313|EMBL:EFE60985.2};
InterProD6I2K7 
PFAMD6I2K7 
ProdomD6I2K7 
UniProtKBD8AQE6SubName: Full=PBS lyase HEAT-like repeat protein {ECO:0000313|EMBL:EFK14631.1};
InterProD8AQE6 
PFAMD8AQE6 
ProdomD8AQE6 
UniProtKBE7JAD7SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProE7JAD7 
PFAME7JAD7 
ProdomE7JAD7 
UniProtKBK4VNZ3SubName: Full=Putative lyase;
InterProK4VNZ3 
PFAMK4VNZ3 
ProdomK4VNZ3 
UniProtKBA0A070Y4L3SubName: Full=Protein yibA {ECO:0000313|EMBL:KDX85910.1};
InterProA0A070Y4L3 
PFAMA0A070Y4L3 
ProdomA0A070Y4L3 
UniProtKBA0A074HJY5SubName: Full=Protein yibA {ECO:0000313|EMBL:KEN94534.1};
InterProA0A074HJY5 
PFAMA0A074HJY5 
ProdomA0A074HJY5 
UniProtKBA0A080GMH5SubName: Full=Protein yibA {ECO:0000313|EMBL:KEN86953.1};
InterProA0A080GMH5 
PFAMA0A080GMH5 
ProdomA0A080GMH5 
UniProtKBA0A0E0XU06SubName: Full=Putative lyase {ECO:0000313|EMBL:AFS72109.1};
InterProA0A0E0XU06 
PFAMA0A0E0XU06 
ProdomA0A0E0XU06 
UniProtKBG1YFV3SubName: Full=PBS lyase HEAT-like repeat family protein;
InterProG1YFV3 
PFAMG1YFV3 
ProdomG1YFV3 
UniProtKBK0BU01SubName: Full=Putative lyase;
InterProK0BU01 
PFAMK0BU01 
ProdomK0BU01