University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A094VWP7
Original Database ID ref NP_418673.4
Organism Escherichia coli, Shigella boydii, etc.
Annotation subname: full=toxin-antitoxin
biofilm protein taba {eco:0000313|embl:ako55392.1}
;subname: full=uncharacterized
protein yjgk {eco:0000313|embl:cee0722
...
Sequence Length 150

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region1-150
Protein Length150
Template PDB Code1s4cA
Template Region1-153
Sequence Identity28%
E-Value0
GA3410.99
MPQS1.3229
z-DOPE-0.27
TSVMod MethodMSALL
TSVMod RMSD3.729
TSVMod NO350.793
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1s4cyhch protein (hi0227) copper complex
DBALI1s4cA 
CATH2.60.120.370 Domain: 1s4cA00 Jelly Rolls (99%)
JenaImageLibrary1s4c 
Target Sequence
UniProtKBA0A0G3KTK8SubName: Full=Toxin-antitoxin biofilm protein TabA {ECO:0000313|EMBL:AKK56633.1};
InterProA0A0G3KTK8 
PFAMA0A0G3KTK8 
ProdomA0A0G3KTK8 
UniProtKBJ2FJ87SubName: Full=Toxin-antitoxin biofilm protein;
InterProJ2FJ87 
PFAMJ2FJ87 
ProdomJ2FJ87 
UniProtKBI6F8L2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIQ52604.1};
InterProI6F8L2 
PFAMI6F8L2 
ProdomI6F8L2 
UniProtKBI6CND7SubName: Full=Uncharacterized protein;
InterProI6CND7 
PFAMI6CND7 
ProdomI6CND7 
UniProtKBI0VJY6SubName: Full=Uncharacterized protein;
InterProI0VJY6 
PFAMI0VJY6 
ProdomI0VJY6 
UniProtKBF7RHF9SubName: Full=Toxin-antitoxin biofilm protein;
InterProF7RHF9 
PFAMF7RHF9 
ProdomF7RHF9 
UniProtKBG2F2E9SubName: Full=Putative uncharacterized protein;
InterProG2F2E9 
PFAMG2F2E9 
ProdomG2F2E9 
UniProtKBB1XEN1SubName: Full=Conserved protein;
InterProB1XEN1 
PFAMB1XEN1 
ProdomB1XEN1 
UniProtKBC4ZRC3SubName: Full=Conserved protein;
InterProC4ZRC3 
PFAMC4ZRC3 
ProdomC4ZRC3 
UniProtKBC9QTI0SubName: Full=Uncharacterized protein;
InterProC9QTI0 
PFAMC9QTI0 
ProdomC9QTI0 
UniProtKBF5R6H9SubName: Full=Toxin-antitoxin biofilm protein;
InterProF5R6H9 
PFAMF5R6H9 
ProdomF5R6H9 
UniProtKBF5QSD7SubName: Full=Putative uncharacterized protein;
InterProF5QSD7 
PFAMF5QSD7 
ProdomF5QSD7 
UniProtKBP0AF96RecName: Full=Toxin-antitoxin biofilm protein TabA;
InterProP0AF96 
PFAMP0AF96 
ProdomP0AF96 
UniProtKBA0A0G3HSH7SubName: Full=Biofilm modulator regulated by toxins protein {ECO:0000313|EMBL:AKK16294.1};
InterProA0A0G3HSH7 
PFAMA0A0G3HSH7 
ProdomA0A0G3HSH7 
UniProtKBA0A0F6MJX3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EID64452.1};
InterProA0A0F6MJX3 
PFAMA0A0F6MJX3 
ProdomA0A0F6MJX3 
UniProtKBA0A0F6EL43SubName: Full=YjgK {ECO:0000313|EMBL:AIL43564.1};
InterProA0A0F6EL43 
PFAMA0A0F6EL43 
ProdomA0A0F6EL43 
UniProtKBA0A0C7MMD5SubName: Full=Putative Beta-galactosidase%2C beta subunit {ECO:0000313|EMBL:CEP58394.1};
InterProA0A0C7MMD5 
PFAMA0A0C7MMD5 
ProdomA0A0C7MMD5 
UniProtKBA0A0A5NY20SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDX09668.1};
InterProA0A0A5NY20 
PFAMA0A0A5NY20 
ProdomA0A0A5NY20 
UniProtKBA0A094VWP7SubName: Full=Toxin-antitoxin biofilm protein TabA {ECO:0000313|EMBL:AKO55392.1};SubName: Full=Uncharacterized protein yjgK {ECO:0000313|EMBL:CEE07227.1};
InterProA0A094VWP7 
PFAMA0A094VWP7 
ProdomA0A094VWP7 
UniProtKBT9C2C2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EQY08702.1};
InterProT9C2C2 
PFAMT9C2C2 
ProdomT9C2C2 
UniProtKBP39335RecName: Full=Toxin-antitoxin biofilm protein TabA homolog;
InterProP39335 
PFAMP39335 
ProdomP39335 
UniProtKBP0AF97RecName: Full=Toxin-antitoxin biofilm protein TabA homolog;
InterProP0AF97 
PFAMP0AF97 
ProdomP0AF97 
UniProtKBE3YB82SubName: Full=Putative uncharacterized protein;
InterProE3YB82 
PFAME3YB82 
ProdomE3YB82 
UniProtKBQ2M657RecName: Full=Toxin-antitoxin biofilm protein TabA;
InterProQ2M657 
PFAMQ2M657 
ProdomQ2M657 
UniProtKBM9AMW6SubName: Full=Uncharacterized protein;
InterProM9AMW6 
PFAMM9AMW6 
ProdomM9AMW6 
UniProtKBI6B6E5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIQ02837.1};
InterProI6B6E5 
PFAMI6B6E5 
ProdomI6B6E5 
UniProtKBF5P3Y1SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EGK31515.1};
InterProF5P3Y1 
PFAMF5P3Y1 
ProdomF5P3Y1 
UniProtKBF5MFU8SubName: Full=Putative uncharacterized protein;
InterProF5MFU8 
PFAMF5MFU8 
ProdomF5MFU8 
UniProtKBF5NAZ7SubName: Full=Putative uncharacterized protein;
InterProF5NAZ7 
PFAMF5NAZ7 
ProdomF5NAZ7 
UniProtKBF5PJV6SubName: Full=Putative uncharacterized protein;
InterProF5PJV6 
PFAMF5PJV6 
ProdomF5PJV6 
UniProtKBH0QGA9SubName: Full=Conserved protein;
InterProH0QGA9 
PFAMH0QGA9 
ProdomH0QGA9 
UniProtKBI6CIV7SubName: Full=Uncharacterized protein;
InterProI6CIV7 
PFAMI6CIV7 
ProdomI6CIV7 
UniProtKBF9QXW4SubName: Full=Putative uncharacterized protein;
InterProF9QXW4 
PFAMF9QXW4 
ProdomF9QXW4 
UniProtKBF5QE09SubName: Full=Putative uncharacterized protein;
InterProF5QE09 
PFAMF5QE09 
ProdomF5QE09 
UniProtKBQ0SXJ0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABF06225.1};
InterProQ0SXJ0 
PFAMQ0SXJ0 
ProdomQ0SXJ0 
UniProtKBF5PZE2SubName: Full=Putative uncharacterized protein;
InterProF5PZE2 
PFAMF5PZE2 
ProdomF5PZE2 
UniProtKBM9C8Y4SubName: Full=Uncharacterized protein;
InterProM9C8Y4 
PFAMM9C8Y4 
ProdomM9C8Y4 
UniProtKBF5MW65SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EGK29667.1};
InterProF5MW65 
PFAMF5MW65 
ProdomF5MW65 
UniProtKBM2M796SubName: Full=Putative Beta-galactosidase, beta subunit;
InterProM2M796 
PFAMM2M796 
ProdomM2M796 
UniProtKBA0A4P7TQG4SubName: Full=YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:QCC33154.1}
InterProA0A4P7TQG4 
PFAMA0A4P7TQG4 
ProdomA0A4P7TQG4 
UniProtKBA0A8F8GYU8SubName: Full=Toxin-antitoxin biofilm protein TabA {ECO:0000313|EMBL:QXZ36475.1}
InterProA0A8F8GYU8 
PFAMA0A8F8GYU8 
ProdomA0A8F8GYU8 
UniProtKBA0A8F2TL13SubName: Full=Toxin-antitoxin biofilm protein TabA {ECO:0000313|EMBL:QWV69643.1}
InterProA0A8F2TL13 
PFAMA0A8F2TL13 
ProdomA0A8F2TL13 
UniProtKBA0A822PJB3SubName: Full=Putative Beta-galactosidase, beta subunit {ECO:0000313|EMBL:CEP58394.1}
InterProA0A822PJB3 
PFAMA0A822PJB3 
ProdomA0A822PJB3 
UniProtKBF5QE09SubName: Full=Putative uncharacterized protein;
InterProF5QE09 
PFAMF5QE09 
ProdomF5QE09 
UniProtKBA0A7G6JMF4SubName: Full=Toxin-antitoxin biofilm protein TabA {ECO:0000313|EMBL:QNC56074.1}
InterProA0A7G6JMF4 
PFAMA0A7G6JMF4 
ProdomA0A7G6JMF4 
UniProtKBA0A5Q3TFW1SubName: Full=YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:QGL43389.1}
InterProA0A5Q3TFW1 
PFAMA0A5Q3TFW1 
ProdomA0A5Q3TFW1 
UniProtKBF5PZE2SubName: Full=Putative uncharacterized protein;
InterProF5PZE2 
PFAMF5PZE2 
ProdomF5PZE2 
UniProtKBA0A8F9HA76SubName: Full=Toxin-antitoxin biofilm protein TabA {ECO:0000313|EMBL:QYE25255.1}
InterProA0A8F9HA76 
PFAMA0A8F9HA76 
ProdomA0A8F9HA76 
UniProtKBF5MFU8SubName: Full=Putative uncharacterized protein;
InterProF5MFU8 
PFAMF5MFU8 
ProdomF5MFU8 
UniProtKBC9QTI0SubName: Full=Putative uncharacterized protein yjgK;
InterProC9QTI0 
PFAMC9QTI0 
ProdomC9QTI0 
UniProtKBF5MW65SubName: Full=Putative uncharacterized protein;
InterProF5MW65 
PFAMF5MW65 
ProdomF5MW65 
UniProtKBC4ZRC3SubName: Full=Conserved protein;
InterProC4ZRC3 
PFAMC4ZRC3 
ProdomC4ZRC3 
UniProtKBB1XEN1SubName: Full=Conserved protein;
InterProB1XEN1 
PFAMB1XEN1 
ProdomB1XEN1 
UniProtKBF9QXW4SubName: Full=Putative uncharacterized protein;
InterProF9QXW4 
PFAMF9QXW4 
ProdomF9QXW4 
UniProtKBF7RHF9SubName: Full=Toxin-antitoxin biofilm protein;
InterProF7RHF9 
PFAMF7RHF9 
ProdomF7RHF9 
UniProtKBF5NAZ7SubName: Full=Putative uncharacterized protein;
InterProF5NAZ7 
PFAMF5NAZ7 
ProdomF5NAZ7 
UniProtKBF5P3Y1SubName: Full=Putative uncharacterized protein;
InterProF5P3Y1 
PFAMF5P3Y1 
ProdomF5P3Y1 
UniProtKBF5R6H9SubName: Full=Toxin-antitoxin biofilm protein;
InterProF5R6H9 
PFAMF5R6H9 
ProdomF5R6H9 
UniProtKBF5PJV6SubName: Full=Putative uncharacterized protein;
InterProF5PJV6 
PFAMF5PJV6 
ProdomF5PJV6 
UniProtKBE3YB82SubName: Full=Putative uncharacterized protein;
InterProE3YB82 
PFAME3YB82 
ProdomE3YB82 
UniProtKBF5QSD7SubName: Full=Putative uncharacterized protein;
InterProF5QSD7 
PFAMF5QSD7 
ProdomF5QSD7 
UniProtKBA0A2S5ZRY5SubName: Full=DUF386 domain-containing protein {ECO:0000313|EMBL:MHT27442.1}SubName: Full=Toxin-antitoxin biofilm protein {ECO:0000313|EMBL:VTQ24049.1}SubName: Full=YhcH/YjgK/YiaL family protein {ECO:
InterProA0A2S5ZRY5 
PFAMA0A2S5ZRY5 
ProdomA0A2S5ZRY5 
UniProtKBI6B6E5SubName: Full=Uncharacterized protein;
InterProI6B6E5 
PFAMI6B6E5 
ProdomI6B6E5 
UniProtKBJ2FJ87SubName: Full=Toxin-antitoxin biofilm protein;
InterProJ2FJ87 
PFAMJ2FJ87 
ProdomJ2FJ87 
UniProtKBG2F2E9SubName: Full=Putative uncharacterized protein;
InterProG2F2E9 
PFAMG2F2E9 
ProdomG2F2E9 
UniProtKBH0QGA9SubName: Full=Conserved protein;
InterProH0QGA9 
PFAMH0QGA9 
ProdomH0QGA9 
UniProtKBI0VJY6SubName: Full=Uncharacterized protein;
InterProI0VJY6 
PFAMI0VJY6 
ProdomI0VJY6 
UniProtKBI6CIV7SubName: Full=Uncharacterized protein;
InterProI6CIV7 
PFAMI6CIV7 
ProdomI6CIV7 
UniProtKBQ0SXJ0SubName: Full=Putative uncharacterized protein yjgK;
InterProQ0SXJ0 
PFAMQ0SXJ0 
ProdomQ0SXJ0 
UniProtKBA0A2S4N3K7SubName: Full=DUF386 domain-containing protein {ECO:0000313|EMBL:EAA3072174.1}SubName: Full=Putative Beta-galactosidase, beta subunit {ECO:0000313|EMBL:SRN37102.1}SubName: Full=YhcH/YjgK/YiaL family p
InterProA0A2S4N3K7 
PFAMA0A2S4N3K7 
ProdomA0A2S4N3K7 
UniProtKBI6CND7SubName: Full=Uncharacterized protein;
InterProI6CND7 
PFAMI6CND7 
ProdomI6CND7 
UniProtKBA0A200LAP6SubName: Full=DUF386 domain-containing protein {ECO:0000313|EMBL:OUZ58574.1}
InterProA0A200LAP6 
PFAMA0A200LAP6 
ProdomA0A200LAP6 
UniProtKBI6F8L2SubName: Full=Uncharacterized protein;
InterProI6F8L2 
PFAMI6F8L2 
ProdomI6F8L2 
UniProtKBQ2M657Hypothetical protein yjgK
InterProQ2M657 
PFAMQ2M657 
ProdomQ2M657 
UniProtKBP0AF96.1YJGK_ECOLI RecName: Full=Uncharacterized protein yjgK
InterProP0AF96.1 
PFAMP0AF96.1 
ProdomP0AF96.1 
UniProtKBQ2M657RecName: Full=Toxin-antitoxin biofilm protein TabA;
InterProQ2M657 
PFAMQ2M657 
ProdomQ2M657 
UniProtKBP39335RecName: Full=Toxin-antitoxin biofilm protein TabA homolog;
InterProP39335 
PFAMP39335 
ProdomP39335 
UniProtKBP0AF97RecName: Full=Toxin-antitoxin biofilm protein TabA homolog;
InterProP0AF97 
PFAMP0AF97 
ProdomP0AF97 
UniProtKBP0AF96RecName: Full=Toxin-antitoxin biofilm protein TabA;
InterProP0AF96 
PFAMP0AF96 
ProdomP0AF96 
UniProtKBP0AF97.1YJGK_SHIFL RecName: Full=Uncharacterized protein yjgK
InterProP0AF97.1 
PFAMP0AF97.1 
ProdomP0AF97.1 
RefSeqYP_002929149.1 hypothetical protein BWG_3958 [Escherichia coli BW2952]
RefSeqYP_001733011.1 hypothetical protein ECDH10B_4445 [Escherichia coli str. K-12 substr. DH10B]
RefSeqNP_839632.1 hypothetical protein S4500 [Shigella flexneri 2a str. 2457T]
RefSeqAP_004748.1 hypothetical protein [Escherichia coli str. K-12 substr. W3110]
RefSeqNP_418673.4 biofilm modulator regulated by toxins [Escherichia coli str. K-12 substr. MG1655]
RefSeqNP_709950.2 hypothetical protein SF4239 [Shigella flexneri 2a str. 301]
RefSeqYP_691530.1 hypothetical protein SFV_4243 [Shigella flexneri 5 str. 8401]
GenPept557274405hypothetical protein BN896_3958
GenPept56384105conserved hypothetical protein
GenPept260450928conserved hypothetical protein
GenPept549815537biofilm modulator regulated by toxins
GenPept932857780Protein YjgK, linked to biofilm formation
GenPept90111713 biofilm modulator regulated by toxins [Escherichia coli str. K-12 substr. MG1655]
GenPept899733954toxin-antitoxin biofilm protein TabA
GenPept808707395toxin-antitoxin biofilm protein TabA
GenPept808703025toxin-antitoxin biofilm protein TabA
GenPept808698644toxin-antitoxin biofilm protein TabA
GenPept802137496biofilm modulator regulated by toxins
GenPept7531280YJGK_ECOLI PROTEIN YJGK
GenPept732686179toxin-antitoxin biofilm protein TabA