University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A024KMZ8
Original Database ID ref NP_417695.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation subname: full=stringent starvation
protein b {eco:0000313|embl:cdp66006.1};
Sequence Length 165

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region3-111
Protein Length165
Template PDB Code1yfnA
Template Region3-111
Sequence Identity100%
E-Value0
GA3411
MPQS1.90671
z-DOPE-1.58
TSVMod MethodMTALL
TSVMod RMSD0.421
TSVMod NO350.995
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1yfnversatile modes of peptide recognition by the aaa+ adaptor protein sspb- the crystal structure of a sspb-rsea complex
DBALI1yfnA 
CATH2.30.30.220 Domain: 1yfnA00 Stringent starvation protein B, SspB (100%)
JenaImageLibrary1yfn 
Target Sequence
UniProtKBB6ZXS4SubName: Full=Stringent starvation protein B;
InterProB6ZXS4 
PFAMB6ZXS4 
ProdomB6ZXS4 
UniProtKBA0A028BV96SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EZE27347.1};
InterProA0A028BV96 
PFAMA0A028BV96 
ProdomA0A028BV96 
UniProtKBA0A028ED76SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EZE57898.1};
InterProA0A028ED76 
PFAMA0A028ED76 
ProdomA0A028ED76 
UniProtKBA0A029LZC7SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:EZJ90261.1};
InterProA0A029LZC7 
PFAMA0A029LZC7 
ProdomA0A029LZC7 
UniProtKBA0A069XB08SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDU27137.1};
InterProA0A069XB08 
PFAMA0A069XB08 
ProdomA0A069XB08 
UniProtKBA0A069Z397SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDU54111.1};
InterProA0A069Z397 
PFAMA0A069Z397 
ProdomA0A069Z397 
UniProtKBA0A070D744SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:KDV36846.1};
InterProA0A070D744 
PFAMA0A070D744 
ProdomA0A070D744 
UniProtKBA0A070T757SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDX21913.1};
InterProA0A070T757 
PFAMA0A070T757 
ProdomA0A070T757 
UniProtKBA0A070UM93SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDX43427.1};
InterProA0A070UM93 
PFAMA0A070UM93 
ProdomA0A070UM93 
UniProtKBA0A071AIR6SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDY60034.1};
InterProA0A071AIR6 
PFAMA0A071AIR6 
ProdomA0A071AIR6 
UniProtKBA0A071BWM1SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDY87587.1};
InterProA0A071BWM1 
PFAMA0A071BWM1 
ProdomA0A071BWM1 
UniProtKBA0A027YSI4SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EZD89202.1};
InterProA0A027YSI4 
PFAMA0A027YSI4 
ProdomA0A027YSI4 
UniProtKBA0A027U3A8SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EZD31984.1};
InterProA0A027U3A8 
PFAMA0A027U3A8 
ProdomA0A027U3A8 
UniProtKBB1IQQ1SubName: Full=Stringent starvation protein B;
InterProB1IQQ1 
PFAMB1IQQ1 
ProdomB1IQQ1 
UniProtKBB3X516SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:EDX33375.1};
InterProB3X516 
PFAMB3X516 
ProdomB3X516 
UniProtKBC6EH04SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:ACT27589.1};
InterProC6EH04 
PFAMC6EH04 
ProdomC6EH04 
UniProtKBC6UF53SubName: Full=ClpXP protease specificity-enhancing factor;
InterProC6UF53 
PFAMC6UF53 
ProdomC6UF53 
UniProtKBC6UUP2SubName: Full=ClpXP protease specificity-enhancing factor;
InterProC6UUP2 
PFAMC6UUP2 
ProdomC6UUP2 
UniProtKBC4ZSW6SubName: Full=ClpXP protease specificity-enhancing factor;
InterProC4ZSW6 
PFAMC4ZSW6 
ProdomC4ZSW6 
UniProtKBD3QSU2SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:ADD58430.1};
InterProD3QSU2 
PFAMD3QSU2 
ProdomD3QSU2 
UniProtKBC9QXP5SubName: Full=Stringent starvation protein B;
InterProC9QXP5 
PFAMC9QXP5 
ProdomC9QXP5 
UniProtKBD6I1K0SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:EFE62072.2};
InterProD6I1K0 
PFAMD6I1K0 
ProdomD6I1K0 
UniProtKBC8UGH9SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:BAI37823.1};
InterProC8UGH9 
PFAMC8UGH9 
ProdomC8UGH9 
UniProtKBB1XHK1SubName: Full=ClpXP protease specificity-enhancing factor;
InterProB1XHK1 
PFAMB1XHK1 
ProdomB1XHK1 
UniProtKBA0A073FPN0SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEJ44586.1};
InterProA0A073FPN0 
PFAMA0A073FPN0 
ProdomA0A073FPN0 
UniProtKBA0A073G8F2SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEJ58270.1};
InterProA0A073G8F2 
PFAMA0A073G8F2 
ProdomA0A073G8F2 
UniProtKBA0A0F6EI44SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AIL42515.1};
InterProA0A0F6EI44 
PFAMA0A0F6EI44 
ProdomA0A0F6EI44 
UniProtKBA0A0G2XGI4SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:AKI68171.1};
InterProA0A0G2XGI4 
PFAMA0A0G2XGI4 
ProdomA0A0G2XGI4 
UniProtKBA0A0G3I1X0SubName: Full=ClpXP protease specificity enhancing factor protein {ECO:0000313|EMBL:AKK18985.1};
InterProA0A0G3I1X0 
PFAMA0A0G3I1X0 
ProdomA0A0G3I1X0 
UniProtKBA0A0H3PTF0SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:EDU92360.1};
InterProA0A0H3PTF0 
PFAMA0A0H3PTF0 
ProdomA0A0H3PTF0 
UniProtKBA0A0H3X9S5SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:AKM36777.1};
InterProA0A0H3X9S5 
PFAMA0A0H3X9S5 
ProdomA0A0H3X9S5 
UniProtKBB3A3P4SubName: Full=Stringent starvation protein B;
InterProB3A3P4 
PFAMB3A3P4 
ProdomB3A3P4 
UniProtKBB3I9Y2SubName: Full=Stringent starvation protein B;
InterProB3I9Y2 
PFAMB3I9Y2 
ProdomB3I9Y2 
UniProtKBB3HGQ0SubName: Full=Stringent starvation protein B;
InterProB3HGQ0 
PFAMB3HGQ0 
ProdomB3HGQ0 
UniProtKBB3WQI4SubName: Full=Stringent starvation protein B;
InterProB3WQI4 
PFAMB3WQI4 
ProdomB3WQI4 
UniProtKBB5YSV4SubName: Full=Stringent starvation protein B;
InterProB5YSV4 
PFAMB5YSV4 
ProdomB5YSV4 
UniProtKBA0A0F6C9J2SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:AFJ30898.1};
InterProA0A0F6C9J2 
PFAMA0A0F6C9J2 
ProdomA0A0F6C9J2 
UniProtKBA0A0E2UA02SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EYV13738.1};
InterProA0A0E2UA02 
PFAMA0A0E2UA02 
ProdomA0A0E2UA02 
UniProtKBA0A0E2U7W5SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EZE23158.1};
InterProA0A0E2U7W5 
PFAMA0A0E2U7W5 
ProdomA0A0E2U7W5 
UniProtKBA0A073THV4SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEL28220.1};
InterProA0A073THV4 
PFAMA0A073THV4 
ProdomA0A073THV4 
UniProtKBA0A073W2W6SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEL86988.1};
InterProA0A073W2W6 
PFAMA0A073W2W6 
ProdomA0A073W2W6 
UniProtKBA0A079F3M1SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDY52306.1};
InterProA0A079F3M1 
PFAMA0A079F3M1 
ProdomA0A079F3M1 
UniProtKBA0A079FFF2SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDY58167.1};
InterProA0A079FFF2 
PFAMA0A079FFF2 
ProdomA0A079FFF2 
UniProtKBA0A080EI28SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEN46362.1};
InterProA0A080EI28 
PFAMA0A080EI28 
ProdomA0A080EI28 
UniProtKBA0A080F1T9SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEN53136.1};
InterProA0A080F1T9 
PFAMA0A080F1T9 
ProdomA0A080F1T9 
UniProtKBA0A080I0V2SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEO22232.1};
InterProA0A080I0V2 
PFAMA0A080I0V2 
ProdomA0A080I0V2 
UniProtKBA0A080IHW5SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEO29374.1};
InterProA0A080IHW5 
PFAMA0A080IHW5 
ProdomA0A080IHW5 
UniProtKBA0A0C7MPG2SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:CEP57360.1};
InterProA0A0C7MPG2 
PFAMA0A0C7MPG2 
ProdomA0A0C7MPG2 
UniProtKBA0A0E0XV42SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:AFS72494.1};
InterProA0A0E0XV42 
PFAMA0A0E0XV42 
ProdomA0A0E0XV42 
UniProtKBB6I1U6SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:BAG79031.1};
InterProB6I1U6 
PFAMB6I1U6 
ProdomB6I1U6 
UniProtKBB3XHZ0SubName: Full=Stringent starvation protein B;
InterProB3XHZ0 
PFAMB3XHZ0 
ProdomB3XHZ0 
UniProtKBA8A537SubName: Full=Stringent starvation protein B;
InterProA8A537 
PFAMA8A537 
ProdomA8A537 
UniProtKBD7XN81SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:EFJ87176.1};
InterProD7XN81 
PFAMD7XN81 
ProdomD7XN81 
UniProtKBA0A026H6J3SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EYY78582.1};
InterProA0A026H6J3 
PFAMA0A026H6J3 
ProdomA0A026H6J3 
UniProtKBA0A029KAE6SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:EZJ70288.1};
InterProA0A029KAE6 
PFAMA0A029KAE6 
ProdomA0A029KAE6 
UniProtKBA0A070FE40SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:KDV63407.1};
InterProA0A070FE40 
PFAMA0A070FE40 
ProdomA0A070FE40 
UniProtKBA0A071CBT6SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDZ16365.1};
InterProA0A071CBT6 
PFAMA0A071CBT6 
ProdomA0A071CBT6 
UniProtKBA0A074IB95SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEO07518.1};
InterProA0A074IB95 
PFAMA0A074IB95 
ProdomA0A074IB95 
UniProtKBA0A080FQT4SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEN65002.1};
InterProA0A080FQT4 
PFAMA0A080FQT4 
ProdomA0A080FQT4 
UniProtKBA0A0E1SRX3SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:EDU62263.1};
InterProA0A0E1SRX3 
PFAMA0A0E1SRX3 
ProdomA0A0E1SRX3 
UniProtKBA0A0F6FCT9SubName: Full=ClpXP protease specificity-enhancing factor / Stringent starvation protein B {ECO:0000313|EMBL:AJA28229.1};
InterProA0A0F6FCT9 
PFAMA0A0F6FCT9 
ProdomA0A0F6FCT9 
UniProtKBB3BEK2SubName: Full=Stringent starvation protein B;
InterProB3BEK2 
PFAMB3BEK2 
ProdomB3BEK2 
UniProtKBC8TIC9SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:BAI27499.1};
InterProC8TIC9 
PFAMC8TIC9 
ProdomC8TIC9 
UniProtKBB7LHT6SubName: Full=SspB protein {ECO:0000313|EMBL:CAU99889.1};
InterProB7LHT6 
PFAMB7LHT6 
ProdomB7LHT6 
UniProtKBB3B730SubName: Full=Stringent starvation protein B;
InterProB3B730 
PFAMB3B730 
ProdomB3B730 
UniProtKBA7ZSC2SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:ABV18754.1};
InterProA7ZSC2 
PFAMA7ZSC2 
ProdomA7ZSC2 
UniProtKBA0A0H4S0Y2SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:AKP86204.1};
InterProA0A0H4S0Y2 
PFAMA0A0H4S0Y2 
ProdomA0A0H4S0Y2 
UniProtKBA0A024KMZ8SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:CDP66006.1};
InterProA0A024KMZ8 
PFAMA0A024KMZ8 
ProdomA0A024KMZ8 
UniProtKBA0A074I514SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEN95342.1};
InterProA0A074I514 
PFAMA0A074I514 
ProdomA0A074I514 
UniProtKBA0A0I0UST2SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:CSO97666.1};
InterProA0A0I0UST2 
PFAMA0A0I0UST2 
ProdomA0A0I0UST2 
UniProtKBC5W9H0SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:ACT27589.1};
InterProC5W9H0 
PFAMC5W9H0 
ProdomC5W9H0 
UniProtKBA0A025GIW5SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EYV63536.1};
InterProA0A025GIW5 
PFAMA0A025GIW5 
ProdomA0A025GIW5 
UniProtKBA0A070DKT4SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:KDV41142.1};
InterProA0A070DKT4 
PFAMA0A070DKT4 
ProdomA0A070DKT4 
UniProtKBA0A074IB67SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEN97609.1};
InterProA0A074IB67 
PFAMA0A074IB67 
ProdomA0A074IB67 
UniProtKBA0A0E1M249SubName: Full=ClpXP protease specificity enhancing factor {ECO:0000313|EMBL:AJF58045.1};
InterProA0A0E1M249 
PFAMA0A0E1M249 
ProdomA0A0E1M249 
UniProtKBB3C0A9SubName: Full=Stringent starvation protein B;
InterProB3C0A9 
PFAMB3C0A9 
ProdomB3C0A9 
UniProtKBB7M0U0SubName: Full=ClpXP protease specificity-enhancing factor;
InterProB7M0U0 
PFAMB7M0U0 
ProdomB7M0U0 
UniProtKBA0A079DPS5SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDY23933.1};
InterProA0A079DPS5 
PFAMA0A079DPS5 
ProdomA0A079DPS5 
UniProtKBA0A079GVY6SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDY94420.1};
InterProA0A079GVY6 
PFAMA0A079GVY6 
ProdomA0A079GVY6 
UniProtKBA0A080GSA6SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEN87708.1};
InterProA0A080GSA6 
PFAMA0A080GSA6 
ProdomA0A080GSA6 
UniProtKBA0A094NRT4SubName: Full=ClpXP protease specificity-enhancing factor,Stringent starvation protein B,ClpXP protease specificity-enhancing factor,Stringent starvation protein B {ECO:0000313|EMBL:CDX08660.1};
InterProA0A094NRT4 
PFAMA0A094NRT4 
ProdomA0A094NRT4 
UniProtKBA0A0E1ZSM7SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:EIL32424.1};
InterProA0A0E1ZSM7 
PFAMA0A0E1ZSM7 
ProdomA0A0E1ZSM7 
UniProtKBA0A0E3KIN4SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:AKA92412.1};
InterProA0A0E3KIN4 
PFAMA0A0E3KIN4 
ProdomA0A0E3KIN4 
UniProtKBA0A0F6MHL3SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:EID63548.1};
InterProA0A0F6MHL3 
PFAMA0A0F6MHL3 
ProdomA0A0F6MHL3 
UniProtKBA0A0G3KSX9SubName: Full=Peptidase {ECO:0000313|EMBL:AKK55732.1};
InterProA0A0G3KSX9 
PFAMA0A0G3KSX9 
ProdomA0A0G3KSX9 
UniProtKBB3AP82SubName: Full=Stringent starvation protein B;
InterProB3AP82 
PFAMB3AP82 
ProdomB3AP82 
UniProtKBB3INP5SubName: Full=Stringent starvation protein B;
InterProB3INP5 
PFAMB3INP5 
ProdomB3INP5 
UniProtKBA0A073GLH0SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KEJ66484.1};
InterProA0A073GLH0 
PFAMA0A073GLH0 
ProdomA0A073GLH0 
UniProtKBA0A071DCD4SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDZ39109.1};
InterProA0A071DCD4 
PFAMA0A071DCD4 
ProdomA0A071DCD4 
UniProtKBA0A070YBF3SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDX88340.1};
InterProA0A070YBF3 
PFAMA0A070YBF3 
ProdomA0A070YBF3 
UniProtKBB2NAK5SubName: Full=Stringent starvation protein B;
InterProB2NAK5 
PFAMB2NAK5 
ProdomB2NAK5 
UniProtKBC8TXL7SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:BAI32679.1};
InterProC8TXL7 
PFAMC8TXL7 
ProdomC8TXL7 
UniProtKBD2A8T2SubName: Full=Putative Stringent starvation protein B {ECO:0000313|EMBL:ADA75591.1};
InterProD2A8T2 
PFAMD2A8T2 
ProdomD2A8T2 
UniProtKBC3SRZ2SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:AIZ88862.1};SubName: Full=ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:CCQ30757.2};SubName: Full=Strain O157 SvETEC scaffold10.1, who
InterProC3SRZ2 
PFAMC3SRZ2 
ProdomC3SRZ2 
UniProtKBA0A026V1V4SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EZA36019.1};
InterProA0A026V1V4 
PFAMA0A026V1V4 
ProdomA0A026V1V4 
UniProtKBA0A028AIN5SubName: Full=Clp protease ClpP {ECO:0000313|EMBL:EZE11147.1};
InterProA0A028AIN5 
PFAMA0A028AIN5 
ProdomA0A028AIN5 
UniProtKBA0A029LDP4SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:EZJ83101.1};
InterProA0A029LDP4 
PFAMA0A029LDP4 
ProdomA0A029LDP4 
UniProtKBA0A069XRA4SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDU32742.1};
InterProA0A069XRA4 
PFAMA0A069XRA4 
ProdomA0A069XRA4 
UniProtKBA0A070T0S6SubName: Full=Stringent starvation protein B {ECO:0000313|EMBL:KDX23962.1};
InterProA0A070T0S6 
PFAMA0A070T0S6 
ProdomA0A070T0S6 
UniProtKBB2PLJ9SubName: Full=Stringent starvation protein B;
InterProB2PLJ9 
PFAMB2PLJ9 
ProdomB2PLJ9