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Sequence Information

Primary Database Link P0AGJ6
Original Database ID ref NP_417076.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation recname: full=uncharacterized
trna/rrna methyltransferase yfif;ec=2.1.1.-;
Sequence Length 345

Dataset Information:

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Model Information

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Target Region102-345
Protein Length345
Template PDB Code3nk6A
Template Region22-266
Sequence Identity17%
E-Value0
GA3411
MPQS0.911646
z-DOPE-0.12
TSVMod MethodMSALL
TSVMod RMSD5.342
TSVMod NO350.611
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3nk6structure of the nosiheptide-resistance methyltransferase
DBALI3nk6A 
JenaImageLibrary3nk6 
Target Sequence
UniProtKBD3QNC3SubName: Full=rRNA methylase {ECO:0000313|EMBL:ADD57691.1};
InterProD3QNC3 
PFAMD3QNC3 
ProdomD3QNC3 
UniProtKBA0A028C9N6SubName: Full=Methyltransferase {ECO:0000313|EMBL:EZE32362.1};
InterProA0A028C9N6 
PFAMA0A028C9N6 
ProdomA0A028C9N6 
UniProtKBA0A028E1S5SubName: Full=Methyltransferase {ECO:0000313|EMBL:EZE54176.1};
InterProA0A028E1S5 
PFAMA0A028E1S5 
ProdomA0A028E1S5 
UniProtKBA0A029M5M2SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EZJ92532.1};
InterProA0A029M5M2 
PFAMA0A029M5M2 
ProdomA0A029M5M2 
UniProtKBA0A029PFZ2SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EZK21276.1};
InterProA0A029PFZ2 
PFAMA0A029PFZ2 
ProdomA0A029PFZ2 
UniProtKBA0A069XNP5SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDU30830.1};
InterProA0A069XNP5 
PFAMA0A069XNP5 
ProdomA0A069XNP5 
UniProtKBA0A069Z084SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDU52821.1};
InterProA0A069Z084 
PFAMA0A069Z084 
ProdomA0A069Z084 
UniProtKBA0A070SZJ9SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDX19223.1};
InterProA0A070SZJ9 
PFAMA0A070SZJ9 
ProdomA0A070SZJ9 
UniProtKBA0A070T7N6SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDX25615.1};
InterProA0A070T7N6 
PFAMA0A070T7N6 
ProdomA0A070T7N6 
UniProtKBA0A070YG45SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDX90592.1};
InterProA0A070YG45 
PFAMA0A070YG45 
ProdomA0A070YG45 
UniProtKBA0A071AH43SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDY59443.1};
InterProA0A071AH43 
PFAMA0A071AH43 
ProdomA0A071AH43 
UniProtKBA0A027YTT0SubName: Full=Methyltransferase {ECO:0000313|EMBL:EZD89714.1};
InterProA0A027YTT0 
PFAMA0A027YTT0 
ProdomA0A027YTT0 
UniProtKBA0A027TZ91SubName: Full=Methyltransferase {ECO:0000313|EMBL:EZD30357.1};
InterProA0A027TZ91 
PFAMA0A027TZ91 
ProdomA0A027TZ91 
UniProtKBB1IVP6SubName: Full=tRNA/rRNA methyltransferase (SpoU);
InterProB1IVP6 
PFAMB1IVP6 
ProdomB1IVP6 
UniProtKBC8TVS6SubName: Full=Predicted methyltransferase {ECO:0000313|EMBL:BAI26826.1};
InterProC8TVS6 
PFAMC8TVS6 
ProdomC8TVS6 
UniProtKBD8AVY9SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFK12681.1};
InterProD8AVY9 
PFAMD8AVY9 
ProdomD8AVY9 
UniProtKBD8B968SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFJ64369.1};
InterProD8B968 
PFAMD8B968 
ProdomD8B968 
UniProtKBD8BUP6SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFI89610.1};
InterProD8BUP6 
PFAMD8BUP6 
ProdomD8BUP6 
UniProtKBD7Y9U8SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFJ95630.1};
InterProD7Y9U8 
PFAMD7Y9U8 
ProdomD7Y9U8 
UniProtKBE2KRP1SubName: Full=RNA methyltransferase, TrmH family;
InterProE2KRP1 
PFAME2KRP1 
ProdomE2KRP1 
UniProtKBE2JRK1SubName: Full=RNA methyltransferase, TrmH family;
InterProE2JRK1 
PFAME2JRK1 
ProdomE2JRK1 
UniProtKBE2WZD3SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein;EC=2.1.1.-;
InterProE2WZD3 
PFAME2WZD3 
ProdomE2WZD3 
UniProtKBE1J3S0SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFK69643.1};
InterProE1J3S0 
PFAME1J3S0 
ProdomE1J3S0 
UniProtKBB3C257SubName: Full=RNA methyltransferase, TrmH family;
InterProB3C257 
PFAMB3C257 
ProdomB3C257 
UniProtKBA0A073TBX3SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KEL24939.1};
InterProA0A073TBX3 
PFAMA0A073TBX3 
ProdomA0A073TBX3 
UniProtKBA0A073VTJ4SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KEL77459.1};
InterProA0A073VTJ4 
PFAMA0A073VTJ4 
ProdomA0A073VTJ4 
UniProtKBB3BA12SubName: Full=RNA methyltransferase, TrmH family;
InterProB3BA12 
PFAMB3BA12 
ProdomB3BA12 
UniProtKBB2PCJ1SubName: Full=RNA methyltransferase, TrmH family;
InterProB2PCJ1 
PFAMB2PCJ1 
ProdomB2PCJ1 
UniProtKBB2N2A5SubName: Full=RNA methyltransferase, TrmH family;
InterProB2N2A5 
PFAMB2N2A5 
ProdomB2N2A5 
UniProtKBB1LP94SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:ACB19430.1};
InterProB1LP94 
PFAMB1LP94 
ProdomB1LP94 
UniProtKBB5Z155SubName: Full=RNA methyltransferase, TrmH family;
InterProB5Z155 
PFAMB5Z155 
ProdomB5Z155 
UniProtKBB3WR01SubName: Full=RNA methyltransferase, TrmH family;
InterProB3WR01 
PFAMB3WR01 
ProdomB3WR01 
UniProtKBC6EK05SubName: Full=tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:ACT28165.1};
InterProC6EK05 
PFAMC6EK05 
ProdomC6EK05 
UniProtKBC5W7T5SubName: Full=tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:ACT28165.1};
InterProC5W7T5 
PFAMC5W7T5 
ProdomC5W7T5 
UniProtKBC6UQY7SubName: Full=Predicted methyltransferase;
InterProC6UQY7 
PFAMC6UQY7 
ProdomC6UQY7 
UniProtKBC8UEE6SubName: Full=Predicted methyltransferase {ECO:0000313|EMBL:BAI37118.1};
InterProC8UEE6 
PFAMC8UEE6 
ProdomC8UEE6 
UniProtKBB2PE80SubName: Full=RNA methyltransferase, TrmH family;
InterProB2PE80 
PFAMB2PE80 
ProdomB2PE80 
UniProtKBB2TYK0SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:ACD06803.1};
InterProB2TYK0 
PFAMB2TYK0 
ProdomB2TYK0 
UniProtKBB2NND1SubName: Full=RNA methyltransferase, TrmH family;
InterProB2NND1 
PFAMB2NND1 
ProdomB2NND1 
UniProtKBA0A079DCM2SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDY19774.1};
InterProA0A079DCM2 
PFAMA0A079DCM2 
ProdomA0A079DCM2 
UniProtKBA0A079F4V8SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDY51890.1};
InterProA0A079F4V8 
PFAMA0A079F4V8 
ProdomA0A079F4V8 
UniProtKBA0A080IPL0SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KEO31171.1};
InterProA0A080IPL0 
PFAMA0A080IPL0 
ProdomA0A080IPL0 
UniProtKBA0A0A0FBL9SubName: Full=Putative tRNA/rRNA methyltransferase YfiF {ECO:0000313|EMBL:KGM60224.1};EC=2.1.1.- {ECO:0000313|EMBL:KGM60224.1};
InterProA0A0A0FBL9 
PFAMA0A0A0FBL9 
ProdomA0A0A0FBL9 
UniProtKBA0A0E1M4V6SubName: Full=Putative methyltransferase {ECO:0000313|EMBL:AJF57439.1};
InterProA0A0E1M4V6 
PFAMA0A0E1M4V6 
ProdomA0A0E1M4V6 
UniProtKBA0A0E1T6Q2SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EDU65102.1};
InterProA0A0E1T6Q2 
PFAMA0A0E1T6Q2 
ProdomA0A0E1T6Q2 
UniProtKBA0A0E2UBI6SubName: Full=Methyltransferase {ECO:0000313|EMBL:EZE16583.1};
InterProA0A0E2UBI6 
PFAMA0A0E2UBI6 
ProdomA0A0E2UBI6 
UniProtKBA0A0E3KP62SubName: Full=Putative tRNA/rRNA methyltransferase YfiF {ECO:0000313|EMBL:AKA91678.1};
InterProA0A0E3KP62 
PFAMA0A0E3KP62 
ProdomA0A0E3KP62 
UniProtKBA0A0G3KC89SubName: Full=Putative methyltransferase {ECO:0000313|EMBL:AKK49326.1};
InterProA0A0G3KC89 
PFAMA0A0G3KC89 
ProdomA0A0G3KC89 
UniProtKBA0A0H3PGG6SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EDU88555.1};
InterProA0A0H3PGG6 
PFAMA0A0H3PGG6 
ProdomA0A0H3PGG6 
UniProtKBC9R138SubName: Full=rRNA methylase;SubName: Full=tRNA/rRNA methyltransferase (SpoU);
InterProC9R138 
PFAMC9R138 
ProdomC9R138 
UniProtKBC8U952SubName: Full=Predicted methyltransferase {ECO:0000313|EMBL:BAI31911.1};
InterProC8U952 
PFAMC8U952 
ProdomC8U952 
UniProtKBA0A023Z1I4SubName: Full=Putative tRNA/rRNA methyltransferase yfiF {ECO:0000313|EMBL:AHY71895.1};EC=2.1.1.- {ECO:0000313|EMBL:AHY71895.1};
InterProA0A023Z1I4 
PFAMA0A023Z1I4 
ProdomA0A023Z1I4 
UniProtKBE2X5D1SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EFP72966.1};EC=2.1.1.- {ECO:0000313|EMBL:EFP72966.1};
InterProE2X5D1 
PFAME2X5D1 
ProdomE2X5D1 
UniProtKBA0A026HCN1SubName: Full=Methyltransferase {ECO:0000313|EMBL:EYY79863.1};
InterProA0A026HCN1 
PFAMA0A026HCN1 
ProdomA0A026HCN1 
UniProtKBA0A029KJF1SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EZJ72892.1};
InterProA0A029KJF1 
PFAMA0A029KJF1 
ProdomA0A029KJF1 
UniProtKBA0A070CS04SubName: Full=Methyltransferase {ECO:0000313|EMBL:KDV31643.1};
InterProA0A070CS04 
PFAMA0A070CS04 
ProdomA0A070CS04 
UniProtKBA0A071C0M7SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDY90388.1};
InterProA0A071C0M7 
PFAMA0A071C0M7 
ProdomA0A071C0M7 
UniProtKBA0A080GQI6SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KEN89585.1};
InterProA0A080GQI6 
PFAMA0A080GQI6 
ProdomA0A080GQI6 
UniProtKBA0A0E1ZZZ1SubName: Full=Putative methyltransferase {ECO:0000313|EMBL:EIL39902.1};
InterProA0A0E1ZZZ1 
PFAMA0A0E1ZZZ1 
ProdomA0A0E1ZZZ1 
UniProtKBA0A0H4RYS1SubName: Full=Putative tRNA/rRNA methyltransferase YfiF {ECO:0000313|EMBL:AKP85394.1};
InterProA0A0H4RYS1 
PFAMA0A0H4RYS1 
ProdomA0A0H4RYS1 
UniProtKBB3BQ60SubName: Full=RNA methyltransferase, TrmH family;
InterProB3BQ60 
PFAMB3BQ60 
ProdomB3BQ60 
UniProtKBC3SYZ7SubName: Full=Methyltransferase {ECO:0000313|EMBL:AIZ88162.1};SubName: Full=Putative tRNA/rRNA methyltransferase YfiF {ECO:0000313|EMBL:KGM70925.1};EC=2.1.1.- {ECO:0000313|EMBL:KGM70925.1};SubName: Fu
InterProC3SYZ7 
PFAMC3SYZ7 
ProdomC3SYZ7 
UniProtKBD8ENM2SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFK50692.1};
InterProD8ENM2 
PFAMD8ENM2 
ProdomD8ENM2 
UniProtKBD6HWV8SubName: Full=Methyltransferase {ECO:0000313|EMBL:EFE63194.2};
InterProD6HWV8 
PFAMD6HWV8 
ProdomD6HWV8 
UniProtKBB7M8J6SubName: Full=Putative methyltransferase;
InterProB7M8J6 
PFAMB7M8J6 
ProdomB7M8J6 
UniProtKBA0A024KYR1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDP70050.1};
InterProA0A024KYR1 
PFAMA0A024KYR1 
ProdomA0A024KYR1 
UniProtKBB6I5F6SubName: Full=Putative RNA methyltransferase {ECO:0000313|EMBL:BAG78394.1};
InterProB6I5F6 
PFAMB6I5F6 
ProdomB6I5F6 
UniProtKBA0A025CD30SubName: Full=Methyltransferase {ECO:0000313|EMBL:EYV13592.1};
InterProA0A025CD30 
PFAMA0A025CD30 
ProdomA0A025CD30 
UniProtKBA0A079FU93SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDY62016.1};
InterProA0A079FU93 
PFAMA0A079FU93 
ProdomA0A079FU93 
UniProtKBB3XDC9SubName: Full=RNA methyltransferase, TrmH family;
InterProB3XDC9 
PFAMB3XDC9 
ProdomB3XDC9 
UniProtKBD7ZMY9SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFK27754.1};
InterProD7ZMY9 
PFAMD7ZMY9 
ProdomD7ZMY9 
UniProtKBA0A025FLN3SubName: Full=Methyltransferase {ECO:0000313|EMBL:EYV52913.1};
InterProA0A025FLN3 
PFAMA0A025FLN3 
ProdomA0A025FLN3 
UniProtKBA0A070CHF8SubName: Full=Methyltransferase {ECO:0000313|EMBL:KDV27805.1};
InterProA0A070CHF8 
PFAMA0A070CHF8 
ProdomA0A070CHF8 
UniProtKBA0A079H9E6SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDY97756.1};
InterProA0A079H9E6 
PFAMA0A079H9E6 
ProdomA0A079H9E6 
UniProtKBA0A0H3XBY4SubName: Full=Methyltransferase {ECO:0000313|EMBL:AKM36141.1};
InterProA0A0H3XBY4 
PFAMA0A0H3XBY4 
ProdomA0A0H3XBY4 
UniProtKBC4ZYK4SubName: Full=Predicted methyltransferase;
InterProC4ZYK4 
PFAMC4ZYK4 
ProdomC4ZYK4 
UniProtKBD6JDI4SubName: Full=RNA methyltransferase {ECO:0000313|EMBL:EFF13949.2};
InterProD6JDI4 
PFAMD6JDI4 
ProdomD6JDI4 
UniProtKBA0A080I372SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KEO23037.1};
InterProA0A080I372 
PFAMA0A080I372 
ProdomA0A080I372 
UniProtKBA0A0A8UCB5SubName: Full=Putative methyltransferase {ECO:0000313|EMBL:CEK06362.1};
InterProA0A0A8UCB5 
PFAMA0A0A8UCB5 
ProdomA0A0A8UCB5 
UniProtKBA0A0E2TUD4SubName: Full=Methyltransferase {ECO:0000313|EMBL:EYV14196.1};
InterProA0A0E2TUD4 
PFAMA0A0E2TUD4 
ProdomA0A0E2TUD4 
UniProtKBA0A0G3I4Z2SubName: Full=Putative methyltransferase protein {ECO:0000313|EMBL:AKK18482.1};
InterProA0A0G3I4Z2 
PFAMA0A0G3I4Z2 
ProdomA0A0G3I4Z2 
UniProtKBA0A0I0U982SubName: Full=Putative methyltransferase {ECO:0000313|EMBL:CSO90737.1};EC=2.1.1.185 {ECO:0000313|EMBL:CSO90737.1};
InterProA0A0I0U982 
PFAMA0A0I0U982 
ProdomA0A0I0U982 
UniProtKBB3ACG9SubName: Full=RNA methyltransferase, TrmH family;
InterProB3ACG9 
PFAMB3ACG9 
ProdomB3ACG9 
UniProtKBB3AN77SubName: Full=RNA methyltransferase, TrmH family;
InterProB3AN77 
PFAMB3AN77 
ProdomB3AN77 
UniProtKBB1XBQ8SubName: Full=Predicted methyltransferase;
InterProB1XBQ8 
PFAMB1XBQ8 
ProdomB1XBQ8 
UniProtKBB6ZWN6SubName: Full=RNA methyltransferase, TrmH family;
InterProB6ZWN6 
PFAMB6ZWN6 
ProdomB6ZWN6 
UniProtKBC6UBI9SubName: Full=Predicted methyltransferase;EC=2.1.1.-;
InterProC6UBI9 
PFAMC6UBI9 
ProdomC6UBI9 
UniProtKBA0A074J1B6SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KEO09281.1};
InterProA0A074J1B6 
PFAMA0A074J1B6 
ProdomA0A074J1B6 
UniProtKBA0A071CHL6SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDZ18454.1};
InterProA0A071CHL6 
PFAMA0A071CHL6 
ProdomA0A071CHL6 
UniProtKBA0A070V0Z7SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDX47479.1};
InterProA0A070V0Z7 
PFAMA0A070V0Z7 
ProdomA0A070V0Z7 
UniProtKBB3I6B9SubName: Full=RNA methyltransferase, TrmH family;
InterProB3I6B9 
PFAMB3I6B9 
ProdomB3I6B9 
UniProtKBE1HUM3SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFK88428.1};
InterProE1HUM3 
PFAME1HUM3 
ProdomE1HUM3 
UniProtKBE2K697SubName: Full=RNA methyltransferase, TrmH family;
InterProE2K697 
PFAME2K697 
ProdomE2K697 
UniProtKBD7XMU2SubName: Full=RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EFJ87306.1};
InterProD7XMU2 
PFAMD7XMU2 
ProdomD7XMU2 
UniProtKBA0A026UVQ0SubName: Full=Methyltransferase {ECO:0000313|EMBL:EZA33859.1};
InterProA0A026UVQ0 
PFAMA0A026UVQ0 
ProdomA0A026UVQ0 
UniProtKBA0A028ATC7SubName: Full=Methyltransferase {ECO:0000313|EMBL:EZE14145.1};
InterProA0A028ATC7 
PFAMA0A028ATC7 
ProdomA0A028ATC7 
UniProtKBA0A029LHC2SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EZJ84396.1};
InterProA0A029LHC2 
PFAMA0A029LHC2 
ProdomA0A029LHC2 
UniProtKBA0A069WZ82SubName: Full=RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:KDU22181.1};
InterProA0A069WZ82 
PFAMA0A069WZ82 
ProdomA0A069WZ82 
UniProtKBA0A070FGE5SubName: Full=Methyltransferase {ECO:0000313|EMBL:KDV64137.1};
InterProA0A070FGE5 
PFAMA0A070FGE5 
ProdomA0A070FGE5 
UniProtKBB3IID8SubName: Full=RNA methyltransferase, TrmH family;
InterProB3IID8 
PFAMB3IID8 
ProdomB3IID8