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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link P13445.3
Original Database ID RpoS
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation rpos_ecoli recname: full=rna polymerase
sigma factor rpos; altname: full=sigma-3
8
Sequence Length 330

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region53-328
Protein Length330
Template PDB Code5iplF
Template Region53-328
Sequence Identity100%
E-Value0
GA3411
MPQS1.94176
z-DOPE-0.14
TSVMod MethodMSALL
TSVMod RMSD3.548
TSVMod NO351
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB5ipl
DBALI5iplF 
JenaImageLibrary5ipl 
Target Sequence
UniProtKBB1XCR7RecName: Full=RNA polymerase sigma factor;
InterProB1XCR7 
PFAMB1XCR7 
ProdomB1XCR7 
UniProtKBP13445RecName: Full=RNA polymerase sigma factor RpoS;AltName: Full=Sigma-38;
InterProP13445 
PFAMP13445 
ProdomP13445 
UniProtKBQ2MA88RecName: Full=RNA polymerase sigma factor RpoS;AltName: Full=Sigma-38;
InterProQ2MA88 
PFAMQ2MA88 
ProdomQ2MA88 
UniProtKBH0Q9E6RecName: Full=RNA polymerase sigma factor;
InterProH0Q9E6 
PFAMH0Q9E6 
ProdomH0Q9E6 
UniProtKBQ540P0RecName: Full=RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959};AltName: Full=Sigma S {ECO:0000256|HAMAP-Rule:MF_00959};AltName: Full=Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959};
InterProQ540P0 
PFAMQ540P0 
ProdomQ540P0 
UniProtKBC4ZZP5RecName: Full=RNA polymerase sigma factor;
InterProC4ZZP5 
PFAMC4ZZP5 
ProdomC4ZZP5 
UniProtKBQ79EB7RecName: Full=RNA polymerase sigma factor RpoS;AltName: Full=Sigma-38;
InterProQ79EB7 
PFAMQ79EB7 
ProdomQ79EB7 
UniProtKBF9QWU4RecName: Full=RNA polymerase sigma factor;
InterProF9QWU4 
PFAMF9QWU4 
ProdomF9QWU4 
UniProtKBC4ZZP5RecName: Full=RNA polymerase sigma factor;
InterProC4ZZP5 
PFAMC4ZZP5 
ProdomC4ZZP5 
UniProtKBH0Q9E6RecName: Full=RNA polymerase sigma factor;
InterProH0Q9E6 
PFAMH0Q9E6 
ProdomH0Q9E6 
UniProtKBF9QWU4RecName: Full=RNA polymerase sigma factor;
InterProF9QWU4 
PFAMF9QWU4 
ProdomF9QWU4 
UniProtKBQ540P0RecName: Full=RNA polymerase sigma factor;
InterProQ540P0 
PFAMQ540P0 
ProdomQ540P0 
UniProtKBB1XCR7RecName: Full=RNA polymerase sigma factor;
InterProB1XCR7 
PFAMB1XCR7 
ProdomB1XCR7 
UniProtKBP13445RecName: Full=RNA polymerase sigma factor RpoS {ECO:0000255|HAMAP-Rule:MF_00959};AltName: Full=Sigma S {ECO:0000255|HAMAP-Rule:MF_00959};AltName: Full=Sigma-38 {ECO:0000255|HAMAP-Rule:MF_00959};
InterProP13445 
PFAMP13445 
ProdomP13445 
UniProtKBQ2MA88RecName: Full=RNA polymerase sigma factor RpoS {ECO:0000255|HAMAP-Rule:MF_00959};AltName: Full=Sigma S {ECO:0000255|HAMAP-Rule:MF_00959};AltName: Full=Sigma-38 {ECO:0000255|HAMAP-Rule:MF_00959};
InterProQ2MA88 
PFAMQ2MA88 
ProdomQ2MA88 
UniProtKBQ79EB7RecName: Full=RNA polymerase sigma factor RpoS {ECO:0000255|HAMAP-Rule:MF_00959};AltName: Full=Sigma S {ECO:0000255|HAMAP-Rule:MF_00959};AltName: Full=Sigma-38 {ECO:0000255|HAMAP-Rule:MF_00959};
InterProQ79EB7 
PFAMQ79EB7 
ProdomQ79EB7 
UniProtKBP13445.3RPOS_ECOLI RecName: Full=RNA polymerase sigma factor rpoS; AltName: Full=Sigma-38
InterProP13445.3 
PFAMP13445.3 
ProdomP13445.3 
RefSeqYP_002927674.1 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli BW2952]
RefSeqNP_417221.1 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001731636.1 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli str. K-12 substr. DH10B]
GenPept817575962RNA polymerase, sigma S (sigma 38) factor
GenPept817580104RNA polymerase, sigma S (sigma 38) factor
GenPept817584243RNA polymerase, sigma S (sigma 38) factor
GenPept817588384RNA polymerase, sigma S (sigma 38) factor
GenPept817592524RNA polymerase, sigma S (sigma 38) factor
GenPept882634RNA polymerase sigma subunit RpoS (sigma-38)
GenPept932860810RNA polymerase sigma factor RpoS
GenPept238863502RNA polymerase, sigma S (sigma 38) factor
GenPept808736039RNA polymerase sigma factor RpoS
GenPept808731611RNA polymerase sigma factor RpoS
GenPept808723295RNA polymerase sigma factor RpoS
GenPept60496095unnamed protein product
GenPept60495757unnamed protein product
GenPept60495747unnamed protein product
GenPept557274016RNA polymerase sigma factor RpoS
GenPept549814132RNA polymerase, sigma S (sigma 38) factor
GenPept39837334unnamed protein product
GenPept359332998RNA polymerase, sigma S (sigma 38) factor
GenPept238901878 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli BW2952]
GenPept23306712RNA polymerase sigma factor S
GenPept23306700RNA polymerase sigma factor S
GenPept1789098RNA polymerase, sigma S (sigma 38) factor
GenPept1710676RPOS_ECOLI RecName: Full=RNA polymerase sigma factor rpoS; AltName: Full=Sigma-38
GenPept170082316 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli str. K-12 substr. DH10B]
GenPept169890151RNA polymerase, sigma S (sigma 38) factor
GenPept167305915Sequence 2 from patent US 7319026
GenPept60496307unnamed protein product
GenPept664685019RNA polymerase sigma factor RpoS
GenPept808718924RNA polymerase sigma factor RpoS
GenPept808714513RNA polymerase sigma factor RpoS
GenPept808710151RNA polymerase sigma factor RpoS
GenPept808705791RNA polymerase sigma factor RpoS
GenPept808701418RNA polymerase sigma factor RpoS
GenPept7428077RNECKF transcription initiation factor sigma katF - Escherichia coli
GenPept732683416RNA polymerase sigma factor RpoS
GenPept16130648 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli str. K-12 substr. MG1655]
GenPept687677856RNA polymerase, sigma S (sigma 38) factor, subunit of RNA polymerase sigma 38
GenPept682120190RNA polymerase, sigma S (sigma 38) factor
GenBankAAC75783.1 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli str. K-12 substr. MG1655]
GenBankAAN15267.1 RNA polymerase sigma factor S [Escherichia coli]
GenBankAAN15273.1 RNA polymerase sigma factor S [Escherichia coli]
GenBankACB03858.1 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli str. K-12 substr. DH10B]
GenBankACR65500.1 RNA polymerase, sigma S (sigma 38) factor [Escherichia coli BW2952]
GenBankAAA69251.1 RNA polymerase sigma subunit RpoS (sigma-38) [Escherichia coli str. K-12 substr. MG1655]