University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P13518.2
Original Database ID ref NP_417718.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation csrd_ecoli recname: full=rnase
e specificity factor csrd; altname:
full=regulato r of csrb and csrc
decay csrd
Sequence Length 646

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region210-632
Protein Length646
Template PDB Code3pjxA
Template Region223-646
Sequence Identity24%
E-Value0
GA3411
MPQS1.0214
z-DOPE-0.67
TSVMod MethodMSALL
TSVMod RMSD2.761
TSVMod NO350.884
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3pjx
DBALI3pjxA 
JenaImageLibrary3pjx 
Target Sequence
UniProtKBE1HM38SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFK91007.1};
InterProE1HM38 
PFAME1HM38 
ProdomE1HM38 
UniProtKBA0A073GNY6SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KEJ66507.1};
InterProA0A073GNY6 
PFAMA0A073GNY6 
ProdomA0A073GNY6 
UniProtKBA0A073TIR7SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KEL28243.1};
InterProA0A073TIR7 
PFAMA0A073TIR7 
ProdomA0A073TIR7 
UniProtKBA0A079DP71SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDY23910.1};
InterProA0A079DP71 
PFAMA0A079DP71 
ProdomA0A079DP71 
UniProtKBA0A079FCK4SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDY52283.1};
InterProA0A079FCK4 
PFAMA0A079FCK4 
ProdomA0A079FCK4 
UniProtKBA0A079GTV2SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDY94443.1};
InterProA0A079GTV2 
PFAMA0A079GTV2 
ProdomA0A079GTV2 
UniProtKBA0A080EKM9SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KEN46385.1};
InterProA0A080EKM9 
PFAMA0A080EKM9 
ProdomA0A080EKM9 
UniProtKBA0A0E1M3Z7SubName: Full=Targeting factor for csrBC sRNA degradation {ECO:0000313|EMBL:AJF58068.1};
InterProA0A0E1M3Z7 
PFAMA0A0E1M3Z7 
ProdomA0A0E1M3Z7 
UniProtKBA0A0E3H427SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:AKA92436.1};
InterProA0A0E3H427 
PFAMA0A0E3H427 
ProdomA0A0E3H427 
UniProtKBA0A0H3XAF5SubName: Full=Targeting factor for csrBC sRNA degradation {ECO:0000313|EMBL:AKM36800.1};
InterProA0A0H3XAF5 
PFAMA0A0H3XAF5 
ProdomA0A0H3XAF5 
UniProtKBH4WGC4SubName: Full=Diguanylate cyclase domain protein;
InterProH4WGC4 
PFAMH4WGC4 
ProdomH4WGC4 
UniProtKBA0A071CBD9SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDZ16342.1};
InterProA0A071CBD9 
PFAMA0A071CBD9 
ProdomA0A071CBD9 
UniProtKBA0A071C8M6SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDY87564.1};
InterProA0A071C8M6 
PFAMA0A071C8M6 
ProdomA0A071C8M6 
UniProtKBG2F7H5SubName: Full=Regulatory protein CsrD;
InterProG2F7H5 
PFAMG2F7H5 
ProdomG2F7H5 
UniProtKBM2P2L5SubName: Full=Regulatory protein CsrD;
InterProM2P2L5 
PFAMM2P2L5 
ProdomM2P2L5 
UniProtKBE9WHZ2SubName: Full=GGDEF domain-containing protein;
InterProE9WHZ2 
PFAME9WHZ2 
ProdomE9WHZ2 
UniProtKBM8MEV0SubName: Full=RNase E specificity factor CsrD;
InterProM8MEV0 
PFAMM8MEV0 
ProdomM8MEV0 
UniProtKBM8P7X8SubName: Full=RNase E specificity factor CsrD;
InterProM8P7X8 
PFAMM8P7X8 
ProdomM8P7X8 
UniProtKBE9YIY2SubName: Full=GGDEF domain-containing protein {ECO:0000313|EMBL:EGB65603.1};
InterProE9YIY2 
PFAME9YIY2 
ProdomE9YIY2 
UniProtKBF4M385SubName: Full=Diguanylate cyclase;
InterProF4M385 
PFAMF4M385 
ProdomF4M385 
UniProtKBM8Z371SubName: Full=RNase E specificity factor CsrD;
InterProM8Z371 
PFAMM8Z371 
ProdomM8Z371 
UniProtKBF9R372SubName: Full=Regulatory protein CsrD;
InterProF9R372 
PFAMF9R372 
ProdomF9R372 
UniProtKBM8VQA3SubName: Full=RNase E specificity factor CsrD;
InterProM8VQA3 
PFAMM8VQA3 
ProdomM8VQA3 
UniProtKBL3WDL9SubName: Full=RNase E specificity factor CsrD;
InterProL3WDL9 
PFAML3WDL9 
ProdomL3WDL9 
UniProtKBH4VLP8SubName: Full=RNase E specificity factor CsrD;
InterProH4VLP8 
PFAMH4VLP8 
ProdomH4VLP8 
UniProtKBH4V4J9SubName: Full=Diguanylate cyclase domain protein {ECO:0000313|EMBL:EHV54376.1};
InterProH4V4J9 
PFAMH4V4J9 
ProdomH4V4J9 
UniProtKBL3V857SubName: Full=RNase E specificity factor CsrD;
InterProL3V857 
PFAML3V857 
ProdomL3V857 
UniProtKBC1NEM2SubName: Full=Regulatory protein CsrD;
InterProC1NEM2 
PFAMC1NEM2 
ProdomC1NEM2 
UniProtKBL3QMI4SubName: Full=RNase E specificity factor CsrD;
InterProL3QMI4 
PFAML3QMI4 
ProdomL3QMI4 
UniProtKBC4ZSY9SubName: Full=Conserved inner membrane protein;
InterProC4ZSY9 
PFAMC4ZSY9 
ProdomC4ZSY9 
UniProtKBL4NU77SubName: Full=RNase E specificity factor CsrD;
InterProL4NU77 
PFAML4NU77 
ProdomL4NU77 
UniProtKBL3ZK51SubName: Full=RNase E specificity factor CsrD;
InterProL3ZK51 
PFAML3ZK51 
ProdomL3ZK51 
UniProtKBC9QXM2SubName: Full=Diguanylate cyclase/phosphodiesterase;SubName: Full=Regulatory protein CsrD;Flags: Precursor;
InterProC9QXM2 
PFAMC9QXM2 
ProdomC9QXM2 
UniProtKBL8CAU3SubName: Full=Putative lipoprotein;
InterProL8CAU3 
PFAML8CAU3 
ProdomL8CAU3 
UniProtKBD7ZQP5SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFK26796.1};
InterProD7ZQP5 
PFAMD7ZQP5 
ProdomD7ZQP5 
UniProtKBM8LA06SubName: Full=RNase E specificity factor CsrD;
InterProM8LA06 
PFAMM8LA06 
ProdomM8LA06 
UniProtKBB1IQ40SubName: Full=Diguanylate cyclase/phosphodiesterase;Flags: Precursor;
InterProB1IQ40 
PFAMB1IQ40 
ProdomB1IQ40 
UniProtKBH0Q7X5SubName: Full=Conserved inner membrane protein;
InterProH0Q7X5 
PFAMH0Q7X5 
ProdomH0Q7X5 
UniProtKBA8A561SubName: Full=Cyclic diguanylate phosphodiesterase (EAL) domain;
InterProA8A561 
PFAMA8A561 
ProdomA8A561 
UniProtKBI2QYJ9SubName: Full=RNase E specificity factor CsrD;
InterProI2QYJ9 
PFAMI2QYJ9 
ProdomI2QYJ9 
UniProtKBI2X5V4SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EII44374.1};
InterProI2X5V4 
PFAMI2X5V4 
ProdomI2X5V4 
UniProtKBI2I678SubName: Full=Regulatory protein CsrD;
InterProI2I678 
PFAMI2I678 
ProdomI2I678 
UniProtKBK3J9C1SubName: Full=RNase E specificity factor CsrD;
InterProK3J9C1 
PFAMK3J9C1 
ProdomK3J9C1 
UniProtKBK3HTD9SubName: Full=RNase E specificity factor CsrD;
InterProK3HTD9 
PFAMK3HTD9 
ProdomK3HTD9 
UniProtKBK5HF32SubName: Full=RNase E specificity factor CsrD;
InterProK5HF32 
PFAMK5HF32 
ProdomK5HF32 
UniProtKBI4J6R2SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:EIF84921.1};
InterProI4J6R2 
PFAMI4J6R2 
ProdomI4J6R2 
UniProtKBI0ZWU2SubName: Full=Diguanylate cyclase domain protein;
InterProI0ZWU2 
PFAMI0ZWU2 
ProdomI0ZWU2 
UniProtKBL3HYX0SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:ELD67679.1};
InterProL3HYX0 
PFAML3HYX0 
ProdomL3HYX0 
UniProtKBL2YZW4SubName: Full=RNase E specificity factor CsrD;
InterProL2YZW4 
PFAML2YZW4 
ProdomL2YZW4 
UniProtKBD8B7U4SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFJ64841.1};
InterProD8B7U4 
PFAMD8B7U4 
ProdomD8B7U4 
UniProtKBM7VG06SubName: Full=Inner membrane associated factor modulating specific RNAseE dependent RNA degradation pathways;
InterProM7VG06 
PFAMM7VG06 
ProdomM7VG06 
UniProtKBA0A029KBM6SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:EZJ70311.1};
InterProA0A029KBM6 
PFAMA0A029KBM6 
ProdomA0A029KBM6 
UniProtKBF4SNX9SubName: Full=Putative lipoprotein {ECO:0000313|EMBL:EGI09645.1};
InterProF4SNX9 
PFAMF4SNX9 
ProdomF4SNX9 
UniProtKBA0A070YMZ3SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDX88363.1};
InterProA0A070YMZ3 
PFAMA0A070YMZ3 
ProdomA0A070YMZ3 
UniProtKBA0A074HM40SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KEN95365.1};
InterProA0A074HM40 
PFAMA0A074HM40 
ProdomA0A074HM40 
UniProtKBA0A080GJU3SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KEN87731.1};
InterProA0A080GJU3 
PFAMA0A080GJU3 
ProdomA0A080GJU3 
UniProtKBH9UXE2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFG42185.1};
InterProH9UXE2 
PFAMH9UXE2 
ProdomH9UXE2 
UniProtKBI2ZQS4SubName: Full=Diguanylate cyclase (GGDEF) domain protein;
InterProI2ZQS4 
PFAMI2ZQS4 
ProdomI2ZQS4 
UniProtKBK5HIZ0SubName: Full=RNase E specificity factor CsrD;
InterProK5HIZ0 
PFAMK5HIZ0 
ProdomK5HIZ0 
UniProtKBL3LZS7SubName: Full=RNase E specificity factor CsrD;
InterProL3LZS7 
PFAML3LZS7 
ProdomL3LZS7 
UniProtKBB1XHM2SubName: Full=Conserved inner membrane protein;
InterProB1XHM2 
PFAMB1XHM2 
ProdomB1XHM2 
UniProtKBL5FXY8SubName: Full=RNase E specificity factor CsrD;
InterProL5FXY8 
PFAML5FXY8 
ProdomL5FXY8 
UniProtKBM8SMK1SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:EMV54071.1};
InterProM8SMK1 
PFAMM8SMK1 
ProdomM8SMK1 
UniProtKBD8C2J7SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFI86866.1};
InterProD8C2J7 
PFAMD8C2J7 
ProdomD8C2J7 
UniProtKBC6EGK8SubName: Full=Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ACT27564.1};
InterProC6EGK8 
PFAMC6EGK8 
ProdomC6EGK8 
UniProtKBA0A029LY62SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:EZJ90284.1};
InterProA0A029LY62 
PFAMA0A029LY62 
ProdomA0A029LY62 
UniProtKBC5W9J1SubName: Full=Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ACT27564.1};
InterProC5W9J1 
PFAMC5W9J1 
ProdomC5W9J1 
UniProtKBA0A069Z9U2SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDU54134.1};
InterProA0A069Z9U2 
PFAMA0A069Z9U2 
ProdomA0A069Z9U2 
UniProtKBI2PJ95SubName: Full=RNase E specificity factor CsrD;
InterProI2PJ95 
PFAMI2PJ95 
ProdomI2PJ95 
UniProtKBL4K6X0SubName: Full=RNase E specificity factor CsrD;
InterProL4K6X0 
PFAML4K6X0 
ProdomL4K6X0 
UniProtKBE9WT76SubName: Full=GGDEF domain-containing protein;
InterProE9WT76 
PFAME9WT76 
ProdomE9WT76 
UniProtKBA0A070UNF0SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDX43450.1};
InterProA0A070UNF0 
PFAMA0A070UNF0 
ProdomA0A070UNF0 
UniProtKBA0A080EW07SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KEN53160.1};
InterProA0A080EW07 
PFAMA0A080EW07 
ProdomA0A080EW07 
UniProtKBI2YQN8SubName: Full=Diguanylate cyclase (GGDEF) domain protein;
InterProI2YQN8 
PFAMI2YQN8 
ProdomI2YQN8 
UniProtKBL3KDN7SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:ELD96218.1};
InterProL3KDN7 
PFAML3KDN7 
ProdomL3KDN7 
UniProtKBL8BYZ9SubName: Full=Putative lipoprotein;
InterProL8BYZ9 
PFAML8BYZ9 
ProdomL8BYZ9 
UniProtKBM8LZP7SubName: Full=RNase E specificity factor CsrD;
InterProM8LZP7 
PFAMM8LZP7 
ProdomM8LZP7 
UniProtKBI2YAR4SubName: Full=Diguanylate cyclase (GGDEF) domain protein;
InterProI2YAR4 
PFAMI2YAR4 
ProdomI2YAR4 
UniProtKBK3KK88SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:EKI50062.1};
InterProK3KK88 
PFAMK3KK88 
ProdomK3KK88 
UniProtKBK5CR99SubName: Full=Diguanylate cyclase domain protein {ECO:0000313|EMBL:EKJ83638.1};
InterProK5CR99 
PFAMK5CR99 
ProdomK5CR99 
UniProtKBL3ESV0SubName: Full=RNase E specificity factor CsrD;
InterProL3ESV0 
PFAML3ESV0 
ProdomL3ESV0 
UniProtKBL3IA61SubName: Full=RNase E specificity factor CsrD;
InterProL3IA61 
PFAML3IA61 
ProdomL3IA61 
UniProtKBL3RC02SubName: Full=RNase E specificity factor CsrD;
InterProL3RC02 
PFAML3RC02 
ProdomL3RC02 
UniProtKBL3TG12SubName: Full=RNase E specificity factor CsrD;
InterProL3TG12 
PFAML3TG12 
ProdomL3TG12 
UniProtKBL2VH40SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:ELC14563.1};
InterProL2VH40 
PFAML2VH40 
ProdomL2VH40 
UniProtKBC6UF76SubName: Full=Conserved inner membrane protein;
InterProC6UF76 
PFAMC6UF76 
ProdomC6UF76 
UniProtKBD7Y137SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFJ98649.1};
InterProD7Y137 
PFAMD7Y137 
ProdomD7Y137 
UniProtKBH4UPW1SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:EHV53736.1};
InterProH4UPW1 
PFAMH4UPW1 
ProdomH4UPW1 
UniProtKBH4W220SubName: Full=RNase E specificity factor CsrD;
InterProH4W220 
PFAMH4W220 
ProdomH4W220 
UniProtKBA0A0G3I1Y4SubName: Full=Targeting factor for csrBC sRNA degradation protein {ECO:0000313|EMBL:AKK19005.1};
InterProA0A0G3I1Y4 
PFAMA0A0G3I1Y4 
ProdomA0A0G3I1Y4 
UniProtKBL3WR15SubName: Full=RNase E specificity factor CsrD;
InterProL3WR15 
PFAML3WR15 
ProdomL3WR15 
UniProtKBE9Y267SubName: Full=GGDEF domain-containing protein;
InterProE9Y267 
PFAME9Y267 
ProdomE9Y267 
UniProtKBM9DQ65SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:EMW93195.1};
InterProM9DQ65 
PFAMM9DQ65 
ProdomM9DQ65 
UniProtKBG0F4A1SubName: Full=Diguanylate cyclase domain protein {ECO:0000313|EMBL:AEJ58652.1};
InterProG0F4A1 
PFAMG0F4A1 
ProdomG0F4A1 
UniProtKBA0A071AL43SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDY60057.1};
InterProA0A071AL43 
PFAMA0A071AL43 
ProdomA0A071AL43 
UniProtKBA0A071DDJ9SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDZ39133.1};
InterProA0A071DDJ9 
PFAMA0A071DDJ9 
ProdomA0A071DDJ9 
UniProtKBA0A074IDL1SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KEO07541.1};
InterProA0A074IDL1 
PFAMA0A074IDL1 
ProdomA0A074IDL1 
UniProtKBA0A079FKQ0SubName: Full=RNase E specificity factor CsrD {ECO:0000313|EMBL:KDY59410.1};
InterProA0A079FKQ0 
PFAMA0A079FKQ0 
ProdomA0A079FKQ0 
UniProtKBA0A0E0U422SubName: Full=Diguanylate cyclase {ECO:0000313|EMBL:AEE58541.1};
InterProA0A0E0U422 
PFAMA0A0E0U422 
ProdomA0A0E0U422 
UniProtKBD8AM61SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFK15765.1};
InterProD8AM61 
PFAMD8AM61 
ProdomD8AM61