University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A024L560
Original Database ID ref NP_415482.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation recname: full=dna helicase {eco:0000256|saas:saas00145970};ec=3.6.4.12
{eco:0000 256|saas:saas00145970};
Sequence Length 684

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region197-684
Protein Length684
Template PDB Code2is1B
Template Region10-476
Sequence Identity24%
E-Value0
GA3411
MPQS0.79435
z-DOPE0.94
TSVMod MethodMSALL
TSVMod RMSD14.222
TSVMod NO350.402
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2is1crystal structure of uvrd-dna-so4 complex
DBALI2is1B 
CATH3.40.50.300 Domain: 2is1B01 P-loop containing nucleotide triphosphate hydrolases (100%)
CATH1.10.10.160 Domain: 2is1B02 Arc Repressor Mutant, subunit A (100%)
CATH1.10.486.10 Domain: 2is1B04 PCRA; domain 4 (57%)
JenaImageLibrary2is1 
Target Sequence
UniProtKBM8QJ70SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM8QJ70 
PFAMM8QJ70 
ProdomM8QJ70 
UniProtKBA0A071CEG8RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A071CEG8 
PFAMA0A071CEG8 
ProdomA0A071CEG8 
UniProtKBA0A071DMV3RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A071DMV3 
PFAMA0A071DMV3 
ProdomA0A071DMV3 
UniProtKBA0A074HZC4RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A074HZC4 
PFAMA0A074HZC4 
ProdomA0A074HZC4 
UniProtKBA0A079DSL6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A079DSL6 
PFAMA0A079DSL6 
ProdomA0A079DSL6 
UniProtKBA0A079FST1RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A079FST1 
PFAMA0A079FST1 
ProdomA0A079FST1 
UniProtKBA0A079GVU8RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A079GVU8 
PFAMA0A079GVU8 
ProdomA0A079GVU8 
UniProtKBA0A080IJ59RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A080IJ59 
PFAMA0A080IJ59 
ProdomA0A080IJ59 
UniProtKBA0A0E1LVJ8RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A0E1LVJ8 
PFAMA0A0E1LVJ8 
ProdomA0A0E1LVJ8 
UniProtKBA0A0E2TVK2RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A0E2TVK2 
PFAMA0A0E2TVK2 
ProdomA0A0E2TVK2 
UniProtKBA0A0E3KEQ6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A0E3KEQ6 
PFAMA0A0E3KEQ6 
ProdomA0A0E3KEQ6 
UniProtKBA0A071APG3RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A071APG3 
PFAMA0A071APG3 
ProdomA0A071APG3 
UniProtKBA0A070YES2RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A070YES2 
PFAMA0A070YES2 
ProdomA0A070YES2 
UniProtKBH4UGL6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProH4UGL6 
PFAMH4UGL6 
ProdomH4UGL6 
UniProtKBE9WRD8SubName: Full=UvrD/REP helicase;
InterProE9WRD8 
PFAME9WRD8 
ProdomE9WRD8 
UniProtKBE9XXF2SubName: Full=UvrD/REP helicase;
InterProE9XXF2 
PFAME9XXF2 
ProdomE9XXF2 
UniProtKBM8UBN6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProM8UBN6 
PFAMM8UBN6 
ProdomM8UBN6 
UniProtKBM9AB61SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM9AB61 
PFAMM9AB61 
ProdomM9AB61 
UniProtKBG2ASC3SubName: Full=Helicase IV;EC=3.6.1.-;
InterProG2ASC3 
PFAMG2ASC3 
ProdomG2ASC3 
UniProtKBG2B7J4SubName: Full=Helicase IV;EC=3.6.1.-;
InterProG2B7J4 
PFAMG2B7J4 
ProdomG2B7J4 
UniProtKBM9GBB8RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProM9GBB8 
PFAMM9GBB8 
ProdomM9GBB8 
UniProtKBG2EZ96SubName: Full=DNA helicase IV;
InterProG2EZ96 
PFAMG2EZ96 
ProdomG2EZ96 
UniProtKBM9GB24RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProM9GB24 
PFAMM9GB24 
ProdomM9GB24 
UniProtKBL8CGN9SubName: Full=DNA helicase IV;
InterProL8CGN9 
PFAML8CGN9 
ProdomL8CGN9 
UniProtKBH4W8C2SubName: Full=DNA helicase IV;EC=3.6.1.-;
InterProH4W8C2 
PFAMH4W8C2 
ProdomH4W8C2 
UniProtKBH4VU73SubName: Full=Helicase IV;EC=3.6.4.12;
InterProH4VU73 
PFAMH4VU73 
ProdomH4VU73 
UniProtKBL8C310SubName: Full=DNA helicase IV;
InterProL8C310 
PFAML8C310 
ProdomL8C310 
UniProtKBB3XKE7SubName: Full=Helicase IV;EC=3.6.1.-;
InterProB3XKE7 
PFAMB3XKE7 
ProdomB3XKE7 
UniProtKBL4JRU7SubName: Full=Helicase IV;
InterProL4JRU7 
PFAML4JRU7 
ProdomL4JRU7 
UniProtKBC4ZQ88SubName: Full=DNA helicase IV;
InterProC4ZQ88 
PFAMC4ZQ88 
ProdomC4ZQ88 
UniProtKBM8M7P6SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM8M7P6 
PFAMM8M7P6 
ProdomM8M7P6 
UniProtKBM7VM96SubName: Full=DNA helicase IV;
InterProM7VM96 
PFAMM7VM96 
ProdomM7VM96 
UniProtKBC9QZB4SubName: Full=DNA helicase IV;SubName: Full=UvrD/REP helicase;
InterProC9QZB4 
PFAMC9QZB4 
ProdomC9QZB4 
UniProtKBD6I8N1RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProD6I8N1 
PFAMD6I8N1 
ProdomD6I8N1 
UniProtKBD8BV93RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProD8BV93 
PFAMD8BV93 
ProdomD8BV93 
UniProtKBM8PYQ9SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM8PYQ9 
PFAMM8PYQ9 
ProdomM8PYQ9 
UniProtKBB1X8R6SubName: Full=DNA helicase IV;
InterProB1X8R6 
PFAMB1X8R6 
ProdomB1X8R6 
UniProtKBH4UYB1RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProH4UYB1 
PFAMH4UYB1 
ProdomH4UYB1 
UniProtKBA7ZYR4SubName: Full=Helicase IV;EC=3.6.1.-;
InterProA7ZYR4 
PFAMA7ZYR4 
ProdomA7ZYR4 
UniProtKBI2PPY2SubName: Full=Helicase IV;
InterProI2PPY2 
PFAMI2PPY2 
ProdomI2PPY2 
UniProtKBI2R4N5SubName: Full=Helicase IV;
InterProI2R4N5 
PFAMI2R4N5 
ProdomI2R4N5 
UniProtKBI0ZQ00SubName: Full=UvrD/REP helicase;
InterProI0ZQ00 
PFAMI0ZQ00 
ProdomI0ZQ00 
UniProtKBI4TJ04SubName: Full=DNA helicase IV;
InterProI4TJ04 
PFAMI4TJ04 
ProdomI4TJ04 
UniProtKBI4J2N9RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProI4J2N9 
PFAMI4J2N9 
ProdomI4J2N9 
UniProtKBK3JVX6SubName: Full=Helicase IV;EC=3.6.1.-;
InterProK3JVX6 
PFAMK3JVX6 
ProdomK3JVX6 
UniProtKBI2ZX07SubName: Full=DNA helicase IV/RNA helicase N-terminal domain protein;
InterProI2ZX07 
PFAMI2ZX07 
ProdomI2ZX07 
UniProtKBH9UQM6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProH9UQM6 
PFAMH9UQM6 
ProdomH9UQM6 
UniProtKBL3VJY4SubName: Full=Helicase IV;
InterProL3VJY4 
PFAML3VJY4 
ProdomL3VJY4 
UniProtKBL3LMT4SubName: Full=Helicase IV;
InterProL3LMT4 
PFAML3LMT4 
ProdomL3LMT4 
UniProtKBE6AZL1RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProE6AZL1 
PFAME6AZL1 
ProdomE6AZL1 
UniProtKBM8NXR2SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM8NXR2 
PFAMM8NXR2 
ProdomM8NXR2 
UniProtKBA0A024L560RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A024L560 
PFAMA0A024L560 
ProdomA0A024L560 
UniProtKBG2CHQ5SubName: Full=Helicase IV;EC=3.6.1.-;
InterProG2CHQ5 
PFAMG2CHQ5 
ProdomG2CHQ5 
UniProtKBA0A069Z946RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A069Z946 
PFAMA0A069Z946 
ProdomA0A069Z946 
UniProtKBA0A073H8X8RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A073H8X8 
PFAMA0A073H8X8 
ProdomA0A073H8X8 
UniProtKBA0A080FA49RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A080FA49 
PFAMA0A080FA49 
ProdomA0A080FA49 
UniProtKBA0A0G3HV41SubName: Full=DNA helicase IV protein {ECO:0000313|EMBL:AKK17199.1};
InterProA0A0G3HV41 
PFAMA0A0G3HV41 
ProdomA0A0G3HV41 
UniProtKBI2YP71SubName: Full=DNA helicase IV/RNA helicase N-terminal domain protein;
InterProI2YP71 
PFAMI2YP71 
ProdomI2YP71 
UniProtKBL2ZFC6SubName: Full=Helicase IV;
InterProL2ZFC6 
PFAML2ZFC6 
ProdomL2ZFC6 
UniProtKBL4A281SubName: Full=Helicase IV;
InterProL4A281 
PFAML4A281 
ProdomL4A281 
UniProtKBB2N579SubName: Full=Helicase IV;EC=3.6.1.-;
InterProB2N579 
PFAMB2N579 
ProdomB2N579 
UniProtKBM8MMW9SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM8MMW9 
PFAMM8MMW9 
ProdomM8MMW9 
UniProtKBM9FYW5SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM9FYW5 
PFAMM9FYW5 
ProdomM9FYW5 
UniProtKBM8T0V8SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM8T0V8 
PFAMM8T0V8 
ProdomM8T0V8 
UniProtKBC6EI19SubName: Full=UvrD/REP helicase {ECO:0000313|EMBL:ACT29654.1};
InterProC6EI19 
PFAMC6EI19 
ProdomC6EI19 
UniProtKBA0A029L022RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A029L022 
PFAMA0A029L022 
ProdomA0A029L022 
UniProtKBC5W326SubName: Full=UvrD/REP helicase {ECO:0000313|EMBL:ACT29654.1};
InterProC5W326 
PFAMC5W326 
ProdomC5W326 
UniProtKBA0A029N0M6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A029N0M6 
PFAMA0A029N0M6 
ProdomA0A029N0M6 
UniProtKBI2I997SubName: Full=DNA helicase IV;
InterProI2I997 
PFAMI2I997 
ProdomI2I997 
UniProtKBM7VWT7SubName: Full=DNA helicase IV;
InterProM7VWT7 
PFAMM7VWT7 
ProdomM7VWT7 
UniProtKBF9QWD3SubName: Full=DNA helicase IV;
InterProF9QWD3 
PFAMF9QWD3 
ProdomF9QWD3 
UniProtKBA0A069XQW3RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A069XQW3 
PFAMA0A069XQW3 
ProdomA0A069XQW3 
UniProtKBA0A080EP16RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A080EP16 
PFAMA0A080EP16 
ProdomA0A080EP16 
UniProtKBI2XEL0RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProI2XEL0 
PFAMI2XEL0 
ProdomI2XEL0 
UniProtKBL3X5N7SubName: Full=Helicase IV;
InterProL3X5N7 
PFAML3X5N7 
ProdomL3X5N7 
UniProtKBM8MV98SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM8MV98 
PFAMM8MV98 
ProdomM8MV98 
UniProtKBE9WD19SubName: Full=UvrD/REP helicase;
InterProE9WD19 
PFAME9WD19 
ProdomE9WD19 
UniProtKBI2VWX5SubName: Full=DNA helicase IV/RNA helicase N-terminal domain protein;
InterProI2VWX5 
PFAMI2VWX5 
ProdomI2VWX5 
UniProtKBK3I7A2SubName: Full=Helicase IV;EC=3.6.1.-;
InterProK3I7A2 
PFAMK3I7A2 
ProdomK3I7A2 
UniProtKBK3IVW1SubName: Full=Helicase IV;EC=3.6.1.-;
InterProK3IVW1 
PFAMK3IVW1 
ProdomK3IVW1 
UniProtKBL3TU99SubName: Full=Helicase IV;
InterProL3TU99 
PFAML3TU99 
ProdomL3TU99 
UniProtKBL3VWA5SubName: Full=Helicase IV;
InterProL3VWA5 
PFAML3VWA5 
ProdomL3VWA5 
UniProtKBL4P5X1SubName: Full=Helicase IV;
InterProL4P5X1 
PFAML4P5X1 
ProdomL4P5X1 
UniProtKBL4WVZ9SubName: Full=Helicase IV;
InterProL4WVZ9 
PFAML4WVZ9 
ProdomL4WVZ9 
UniProtKBL3KVH0RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProL3KVH0 
PFAML3KVH0 
ProdomL3KVH0 
UniProtKBC6UEU7SubName: Full=DNA helicase IV;EC=3.6.1.-;
InterProC6UEU7 
PFAMC6UEU7 
ProdomC6UEU7 
UniProtKBM8NNS9SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM8NNS9 
PFAMM8NNS9 
ProdomM8NNS9 
UniProtKBH4VDX6SubName: Full=Helicase IV;EC=3.6.4.12;
InterProH4VDX6 
PFAMH4VDX6 
ProdomH4VDX6 
UniProtKBH4X3F8SubName: Full=DNA helicase IV;EC=3.6.1.-;
InterProH4X3F8 
PFAMH4X3F8 
ProdomH4X3F8 
UniProtKBA0A0E1T3E1RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A0E1T3E1 
PFAMA0A0E1T3E1 
ProdomA0A0E1T3E1 
UniProtKBM2P125SubName: Full=DNA helicase IV;
InterProM2P125 
PFAMM2P125 
ProdomM2P125 
UniProtKBG0F6L6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProG0F6L6 
PFAMG0F6L6 
ProdomG0F6L6 
UniProtKBM9I539SubName: Full=Helicase IV;EC=3.6.4.12;
InterProM9I539 
PFAMM9I539 
ProdomM9I539 
UniProtKBH0Q9L9SubName: Full=DNA helicase IV;
InterProH0Q9L9 
PFAMH0Q9L9 
ProdomH0Q9L9 
UniProtKBA0A070T3V3RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A070T3V3 
PFAMA0A070T3V3 
ProdomA0A070T3V3 
UniProtKBA0A071C7V7RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A071C7V7 
PFAMA0A071C7V7 
ProdomA0A071C7V7 
UniProtKBA0A073THP3RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A073THP3 
PFAMA0A073THP3 
ProdomA0A073THP3 
UniProtKBA0A079FGC6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A079FGC6 
PFAMA0A079FGC6 
ProdomA0A079FGC6 
UniProtKBA0A080GWP5RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProA0A080GWP5 
PFAMA0A080GWP5 
ProdomA0A080GWP5 
UniProtKBE3PIY6RecName: Full=DNA helicase {ECO:0000256|SAAS:SAAS00145970};EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};
InterProE3PIY6 
PFAME3PIY6 
ProdomE3PIY6