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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P22525.2
Original Database ID ref NP_415445.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation ycbb_ecoli recname: full=probable
l,d-transpeptidase ycbb
Sequence Length 615

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region461-551
Protein Length615
Template PDB Code4a1kA
Template Region76-162
Sequence Identity15%
E-Value0.009
GA3410.14
MPQS0.259467
z-DOPE-0.08
TSVMod MethodMSALL
TSVMod RMSD8.06
TSVMod NO350.348
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB4a1k
DBALI4a1kA 
JenaImageLibrary4a1k 
Target Sequence
UniProtKBC9QZF1SubName: Full=ErfK/YbiS/YcfS/YnhG family protein;SubName: Full=Uncharacterized protein;Flags: Precursor;
InterProC9QZF1 
PFAMC9QZF1 
ProdomC9QZF1 
UniProtKBG2EZ58SubName: Full=Murein L,D-transpeptidase;
InterProG2EZ58 
PFAMG2EZ58 
ProdomG2EZ58 
UniProtKBI0ZQ39SubName: Full=Putative carboxypeptidase;
InterProI0ZQ39 
PFAMI0ZQ39 
ProdomI0ZQ39 
UniProtKBH0QC95SubName: Full=Predicted carboxypeptidase;
InterProH0QC95 
PFAMH0QC95 
ProdomH0QC95 
UniProtKBC4ZQ51SubName: Full=Predicted carboxypeptidase;
InterProC4ZQ51 
PFAMC4ZQ51 
ProdomC4ZQ51 
UniProtKBB1X8M9SubName: Full=Predicted carboxypeptidase;
InterProB1X8M9 
PFAMB1X8M9 
ProdomB1X8M9 
UniProtKBM2N6T9SubName: Full=Murein L,D-transpeptidase;
InterProM2N6T9 
PFAMM2N6T9 
ProdomM2N6T9 
UniProtKBA0A0G3HV14SubName: Full=Murein L,D-transpeptidase protein {ECO:0000313|EMBL:AKK17164.1};
InterProA0A0G3HV14 
PFAMA0A0G3HV14 
ProdomA0A0G3HV14 
UniProtKBP22525RecName: Full=Probable L,D-transpeptidase YcbB;EC=2.-.-.-;
InterProP22525 
PFAMP22525 
ProdomP22525 
UniProtKBP75847RecName: Full=Probable L,D-transpeptidase YcbB;EC=2.-.-.-;
InterProP75847 
PFAMP75847 
ProdomP75847 
UniProtKBA0A090JA44SubName: Full=Murein L,D-transpeptidase {ECO:0000313|EMBL:AKO56486.1};SubName: Full=Putative L,D-transpeptidase YcbB;EC=2.-.-.-;
InterProA0A090JA44 
PFAMA0A090JA44 
ProdomA0A090JA44 
UniProtKBF9QW95SubName: Full=Murein L,D-transpeptidase;
InterProF9QW95 
PFAMF9QW95 
ProdomF9QW95 
UniProtKBB1X8M9SubName: Full=Predicted carboxypeptidase;
InterProB1X8M9 
PFAMB1X8M9 
ProdomB1X8M9 
UniProtKBC4ZQ51SubName: Full=Predicted carboxypeptidase;
InterProC4ZQ51 
PFAMC4ZQ51 
ProdomC4ZQ51 
UniProtKBA0A5Q3TJQ0SubName: Full=L,D-transpeptidase {ECO:0000313|EMBL:QGL44265.1}
InterProA0A5Q3TJQ0 
PFAMA0A5Q3TJQ0 
ProdomA0A5Q3TJQ0 
UniProtKBA0A8F9H8F1SubName: Full=L,D-transpeptidase {ECO:0000313|EMBL:QYE24381.1}
InterProA0A8F9H8F1 
PFAMA0A8F9H8F1 
ProdomA0A8F9H8F1 
UniProtKBA0A8F8DD07SubName: Full=L,D-transpeptidase {ECO:0000313|EMBL:QXZ35538.1}
InterProA0A8F8DD07 
PFAMA0A8F8DD07 
ProdomA0A8F8DD07 
UniProtKBF9QW95SubName: Full=Murein L,D-transpeptidase;
InterProF9QW95 
PFAMF9QW95 
ProdomF9QW95 
UniProtKBG2EZ58SubName: Full=Murein L,D-transpeptidase;
InterProG2EZ58 
PFAMG2EZ58 
ProdomG2EZ58 
UniProtKBH0QC95SubName: Full=Predicted carboxypeptidase;
InterProH0QC95 
PFAMH0QC95 
ProdomH0QC95 
UniProtKBI0ZQ39SubName: Full=Putative carboxypeptidase;
InterProI0ZQ39 
PFAMI0ZQ39 
ProdomI0ZQ39 
UniProtKBA0A2S5ZTV3SubName: Full=L,D-transpeptidase {ECO:0000313|EMBL:QGF38788.1}SubName: Full=Putative peptidoglycan binding domain-containing protein {ECO:0000313|EMBL:SVF31063.1}SubName: Full=Transpeptidase {ECO:0000
InterProA0A2S5ZTV3 
PFAMA0A2S5ZTV3 
ProdomA0A2S5ZTV3 
UniProtKBC9QZF1SubName: Full=ErfK/YbiS/YcfS/YnhG family protein;SubName: Full=Putative uncharacterized protein ycbB;Flags: Precursor;
InterProC9QZF1 
PFAMC9QZF1 
ProdomC9QZF1 
UniProtKBA0A8F7SDI2SubName: Full=L,D-transpeptidase {ECO:0000313|EMBL:QXW76252.1}
InterProA0A8F7SDI2 
PFAMA0A8F7SDI2 
ProdomA0A8F7SDI2 
UniProtKBP22525RecName: Full=Probable L,D-transpeptidase YcbB;EC=2.-.-.-;
InterProP22525 
PFAMP22525 
ProdomP22525 
UniProtKBP22525.2YCBB_ECOLI RecName: Full=Probable L,D-transpeptidase YcbB
InterProP22525.2 
PFAMP22525.2 
ProdomP22525.2 
UniProtKBP75847RecName: Full=Probable L,D-transpeptidase YcbB;EC=2.-.-.-;
InterProP75847 
PFAMP75847 
ProdomP75847 
RefSeqYP_001729903.1 carboxypeptidase [Escherichia coli str. K-12 substr. DH10B]
RefSeqAP_001555.1 predicted carboxypeptidase [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_002925979.1 putative carboxypeptidase [Escherichia coli BW2952]
RefSeqNP_415445.1 murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655]
GenPept899726288murein L,D-transpeptidase
GenPept899730667murein L,D-transpeptidase
GenPept932858829L,D-transpeptidase YcbB
GenPept808734313murein L,D-transpeptidase
GenPept359331616predicted carboxypeptidase
GenPept899721932murein L,D-transpeptidase
GenPept89107775 predicted carboxypeptidase [Escherichia coli str. K-12 substr. W3110]
GenPept827621430murein L,D-transpeptidase protein
GenPept731473897murein L,D-transpeptidase
GenPept730586168murein L,D-transpeptidase
GenPept687676098L,D-transpeptidase YcbB
GenPept687671834L,D-transpeptidase YcbB
GenPept682118467murein L,D-transpeptidase
GenPept664683322murein L,D-transpeptidase
GenPept557271297hypothetical protein BN896_0777
GenPept549812436murein L,D-transpeptidase
GenPept4062492predicted carboxypeptidase
GenPept315135573hypothetical protein ECDH1ME8569_0876
GenPept260449929ErfK/YbiS/YcfS/YnhG family protein
GenPept2506630YCBB_ECOLI RecName: Full=Probable L,D-transpeptidase YcbB
GenPept238900183 putative carboxypeptidase [Escherichia coli BW2952]
GenPept238862186predicted carboxypeptidase
GenPept1787155murein L,D-transpeptidase
GenPept170080583 carboxypeptidase [Escherichia coli str. K-12 substr. DH10B]
GenPept169888418predicted carboxypeptidase
GenPept732685143murein L,D-transpeptidase
GenPept7467094D64832 ycbB protein precursor - Escherichia coli
GenPept802134478murein L,D-transpeptidase
GenPept827617258murein L,D-transpeptidase protein
GenPept817590804murein L,D-transpeptidase
GenPept817586663murein L,D-transpeptidase
GenPept817582522murein L,D-transpeptidase
GenPept817578383murein L,D-transpeptidase
GenPept817574241murein L,D-transpeptidase
GenPept808729904murein L,D-transpeptidase
GenPept808721583murein L,D-transpeptidase
GenPept808717213murein L,D-transpeptidase
GenPept808712803murein L,D-transpeptidase
GenPept808708436murein L,D-transpeptidase
GenPept808704058murein L,D-transpeptidase
GenPept808699685murein L,D-transpeptidase
GenPept16128892 murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655]
GenBankAAC74011.1 murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655]
GenBankACB02125.1 predicted carboxypeptidase [Escherichia coli str. K-12 substr. DH10B]
GenBankACR64184.1 predicted carboxypeptidase [Escherichia coli BW2952]
GenBankACX40351.1 ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1]