University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P23482.2
Original Database ID ref NP_416977.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation hyfb_ecoli recname: full=hydrogenase-4
component b
Sequence Length 672

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region4-672
Protein Length672
Template PDB Code3rkoL
Template Region1-611
Sequence Identity25%
E-Value0
GA3411
MPQS1.14354
z-DOPE0.34
TSVMod MethodMSALL
TSVMod RMSD21.596
TSVMod NO350.086
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3rko
DBALI3rkoL 
JenaImageLibrary3rko 
Target Sequence
UniProtKBC4ZX57SubName: Full=Hydrogenase 4, membrane subunit;
InterProC4ZX57 
PFAMC4ZX57 
ProdomC4ZX57 
UniProtKBB1XAF4SubName: Full=Hydrogenase 4, membrane subunit;
InterProB1XAF4 
PFAMB1XAF4 
ProdomB1XAF4 
UniProtKBH0Q8X4SubName: Full=Hydrogenase 4, membrane subunit;
InterProH0Q8X4 
PFAMH0Q8X4 
ProdomH0Q8X4 
UniProtKBC9QPU2SubName: Full=Hydrogenase 4 subunit B;SubName: Full=NADH dehydrogenase (Quinone);EC=1.6.99.5;
InterProC9QPU2 
PFAMC9QPU2 
ProdomC9QPU2 
UniProtKBF9QVP4SubName: Full=Hydrogenase 4 subunit B;
InterProF9QVP4 
PFAMF9QVP4 
ProdomF9QVP4 
UniProtKBG2F0N5SubName: Full=Hydrogenase 4 subunit B;
InterProG2F0N5 
PFAMG2F0N5 
ProdomG2F0N5 
UniProtKBA0A0G3HUC8SubName: Full=Hydrogenase 4, membrane subunit protein {ECO:0000313|EMBL:AKK15553.1};
InterProA0A0G3HUC8 
PFAMA0A0G3HUC8 
ProdomA0A0G3HUC8 
UniProtKBI0ZTU2SubName: Full=Hydrogenase 4, membrane subunit;
InterProI0ZTU2 
PFAMI0ZTU2 
ProdomI0ZTU2 
UniProtKBP23482RecName: Full=Hydrogenase-4 component B;EC=1.-.-.-;
InterProP23482 
PFAMP23482 
ProdomP23482 
UniProtKBM2PEE7SubName: Full=Hydrogenase 4 subunit B;
InterProM2PEE7 
PFAMM2PEE7 
ProdomM2PEE7 
UniProtKBA0A090J0N2SubName: Full=Hydrogenase 4 subunit B {ECO:0000313|EMBL:AKO57992.1};SubName: Full=Hydrogenase-4 component B;EC=1.-.-.-;
InterProA0A090J0N2 
PFAMA0A090J0N2 
ProdomA0A090J0N2 
UniProtKBA0A8F9HCZ1SubName: Full=Hydrogenase 4 subunit B {ECO:0000313|EMBL:QYE26871.1}
InterProA0A8F9HCZ1 
PFAMA0A8F9HCZ1 
ProdomA0A8F9HCZ1 
UniProtKBA0A5Q2GEF2SubName: Full=Hydrogenase 4 subunit B {ECO:0000313|EMBL:QGF37332.1}
InterProA0A5Q2GEF2 
PFAMA0A5Q2GEF2 
ProdomA0A5Q2GEF2 
UniProtKBB1XAF4SubName: Full=Hydrogenase 4, membrane subunit;
InterProB1XAF4 
PFAMB1XAF4 
ProdomB1XAF4 
UniProtKBA0A5Q3TC85SubName: Full=Hydrogenase 4 subunit B {ECO:0000313|EMBL:QGL41776.1}
InterProA0A5Q3TC85 
PFAMA0A5Q3TC85 
ProdomA0A5Q3TC85 
UniProtKBA0A507WSW8SubName: Full=Hydrogenase 4 subunit B {ECO:0000313|EMBL:TQD02384.1}
InterProA0A507WSW8 
PFAMA0A507WSW8 
ProdomA0A507WSW8 
UniProtKBC9QPU2SubName: Full=Hydrogenase 4 subunit B;SubName: Full=NADH dehydrogenase (Quinone);EC=1.6.99.5;
InterProC9QPU2 
PFAMC9QPU2 
ProdomC9QPU2 
UniProtKBI0ZTU2SubName: Full=Hydrogenase 4, membrane subunit;
InterProI0ZTU2 
PFAMI0ZTU2 
ProdomI0ZTU2 
UniProtKBF9QVP4SubName: Full=Hydrogenase 4 subunit B;
InterProF9QVP4 
PFAMF9QVP4 
ProdomF9QVP4 
UniProtKBG2F0N5SubName: Full=Hydrogenase 4 subunit B;
InterProG2F0N5 
PFAMG2F0N5 
ProdomG2F0N5 
UniProtKBH0Q8X4SubName: Full=Hydrogenase 4, membrane subunit;
InterProH0Q8X4 
PFAMH0Q8X4 
ProdomH0Q8X4 
UniProtKBC4ZX57SubName: Full=Hydrogenase 4, membrane subunit;
InterProC4ZX57 
PFAMC4ZX57 
ProdomC4ZX57 
UniProtKBA0A8F8DN48SubName: Full=Hydrogenase 4 subunit B {ECO:0000313|EMBL:QXZ38092.1}
InterProA0A8F8DN48 
PFAMA0A8F8DN48 
ProdomA0A8F8DN48 
UniProtKBP23482.2HYFB_ECOLI RecName: Full=Hydrogenase-4 component B
InterProP23482.2 
PFAMP23482.2 
ProdomP23482.2 
UniProtKBP23482RecName: Full=Hydrogenase-4 component B;EC=1.-.-.-;
InterProP23482 
PFAMP23482 
ProdomP23482 
RefSeqAP_003068.1 hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_002927443.1 hydrogenase 4, membrane subunit [Escherichia coli BW2952]
RefSeqNP_416977.1 hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001731412.1 hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. DH10B]
GenPept808731383hydrogenase 4 subunit B
GenPept89109288 hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. W3110]
GenPept899723428hydrogenase 4 subunit B
GenPept899727783hydrogenase 4 subunit B
GenPept899732222hydrogenase 4 subunit B
GenPept932860550Hydrogenase-4 component B / Formate hydrogenlyase subunit 3
GenPept2506947HYFB_ECOLI RecName: Full=Hydrogenase-4 component B
GenPept827622658hydrogenase 4, membrane subunit protein
GenPept827619570hydrogenase 4, membrane subunit protein
GenPept817592292hydrogenase 4, membrane subunit
GenPept315137105hydrogenase 4 subunit B
GenPept359332791hydrogenase 4, membrane subunit
GenPept549813902hydrogenase 4, membrane subunit
GenPept557272757hydrogenase 4 subunit B
GenPept664684781hydrogenase 4 subunit B
GenPept682119957hydrogenase 4, membrane subunit
GenPept687673330hydrogenase 4, component B
GenPept687677615hydrogenase 4, component B
GenPept2668496HyfB
GenPept260448439NADH dehydrogenase (quinone)
GenPept169889927hydrogenase 4, membrane subunit
GenPept170082092 hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. DH10B]
GenPept1788827hydrogenase 4, membrane subunit
GenPept1799910hydrogenase 4, membrane subunit
GenPept1805541similar to
GenPept218318988unnamed protein product
GenPept238861462hydrogenase 4, membrane subunit
GenPept238901647 hydrogenase 4, membrane subunit [Escherichia coli BW2952]
GenPept730583685hydrogenase 4, membrane subunit
GenPept731471414hydrogenase 4, membrane subunit
GenPept808714285hydrogenase 4 subunit B
GenPept808718694hydrogenase 4 subunit B
GenPept808723066hydrogenase 4 subunit B
GenPept808735811hydrogenase 4 subunit B
GenPept817575730hydrogenase 4, membrane subunit
GenPept817579872hydrogenase 4, membrane subunit
GenPept817584011hydrogenase 4, membrane subunit
GenPept817588152hydrogenase 4, membrane subunit
GenPept808709923hydrogenase 4 subunit B
GenPept808705563hydrogenase 4 subunit B
GenPept7446810A65024 hypothetical protein b2482 (bcp 3' region) - Escherichia coli (strain K-12)
GenPept16130407 hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. MG1655]
GenPept802135867hydrogenase 4, membrane subunit
GenPept808701189hydrogenase 4 subunit B
GenBankAAB88564.1 HyfB [Escherichia coli]
GenBankAAC75535.1 hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. MG1655]
GenBankACR63460.1 hydrogenase 4, membrane subunit [Escherichia coli BW2952]
GenBankACX38861.1 NADH dehydrogenase (quinone) [Escherichia coli DH1]
GenBankACB03634.1 hydrogenase 4, membrane subunit [Escherichia coli str. K-12 substr. DH10B]