University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P23843.2
Original Database ID ref NP_415759.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation oppa_ecoli recname: full=periplasmic
oligopeptide-binding protein;
flags: precur sor
Sequence Length 543

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region27-543
Protein Length543
Template PDB Code1jetA
Template Region1-517
Sequence Identity86%
E-Value0
GA3411
MPQS2.07352
z-DOPE-1.71
TSVMod MethodMTALL
TSVMod RMSD0.365
TSVMod NO351
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1jetoligo-peptide binding protein (oppa) complexed with kak ; PFAM: PF00496 ; SCOP: 35718
DBALI1jetA 
CATH3.40.190.10 Domain: 1jetA01 Periplasmic binding protein-like II (100%)
CATH3.90.76.10 Domain: 1jetA02 Dipeptide-binding Protein; Domain 1 (100%)
CATH3.10.105.10 Domain: 1jetA03 Dipeptide-binding Protein; Domain 3 (100%)
JenaImageLibrary1jet 
Target Sequence
UniProtKBP76829RecName: Full=Periplasmic oligopeptide-binding protein;Flags: Precursor;
InterProP76829 
PFAMP76829 
ProdomP76829 
UniProtKBF9QXI4SubName: Full=Oligopeptide ABC transporter substrate-binding protein OppA;
InterProF9QXI4 
PFAMF9QXI4 
ProdomF9QXI4 
UniProtKBA0A090J7M6SubName: Full=Periplasmic oligopeptide-binding protein;
InterProA0A090J7M6 
PFAMA0A090J7M6 
ProdomA0A090J7M6 
UniProtKBG2F1R5SubName: Full=Oligopeptide ABC transporter substrate-binding protein OppA;
InterProG2F1R5 
PFAMG2F1R5 
ProdomG2F1R5 
UniProtKBH0QA10SubName: Full=Oligopeptide transporter subunit;
InterProH0QA10 
PFAMH0QA10 
ProdomH0QA10 
UniProtKBM2NXZ3SubName: Full=Oligopeptide ABC transporter substrate-binding protein OppA;
InterProM2NXZ3 
PFAMM2NXZ3 
ProdomM2NXZ3 
UniProtKBP23843RecName: Full=Periplasmic oligopeptide-binding protein;Flags: Precursor;
InterProP23843 
PFAMP23843 
ProdomP23843 
UniProtKBH0QA10SubName: Full=Oligopeptide transporter subunit;
InterProH0QA10 
PFAMH0QA10 
ProdomH0QA10 
UniProtKBF9QXI4SubName: Full=Oligopeptide ABC transporter substrate-binding protein OppA;
InterProF9QXI4 
PFAMF9QXI4 
ProdomF9QXI4 
UniProtKBA0A8A8Z2B9SubName: Full=Oligopeptide ABC transporter substrate-binding protein OppA {ECO:0000313|EMBL:QTQ77154.1}
InterProA0A8A8Z2B9 
PFAMA0A8A8Z2B9 
ProdomA0A8A8Z2B9 
UniProtKBA0A7D6GYC9SubName: Full=Oligopeptide ABC transporter substrate-binding protein OppA {ECO:0000313|EMBL:QLK28724.1}
InterProA0A7D6GYC9 
PFAMA0A7D6GYC9 
ProdomA0A7D6GYC9 
UniProtKBG2F1R5SubName: Full=Oligopeptide ABC transporter substrate-binding protein OppA;
InterProG2F1R5 
PFAMG2F1R5 
ProdomG2F1R5 
UniProtKBP76829RecName: Full=Periplasmic oligopeptide-binding protein;Flags: Precursor;
InterProP76829 
PFAMP76829 
ProdomP76829 
UniProtKBP23843.2OPPA_ECOLI RecName: Full=Periplasmic oligopeptide-binding protein; Flags: Precursor
InterProP23843.2 
PFAMP23843.2 
ProdomP23843.2 
UniProtKBP23843RecName: Full=Periplasmic oligopeptide-binding protein;Flags: Precursor;
InterProP23843 
PFAMP23843 
ProdomP23843 
RefSeqAP_001869.1 oligopeptide transporter subunit [Escherichia coli str. K-12 substr. W3110]
RefSeqNP_415759.1 oligopeptide transporter subunit [Escherichia coli str. K-12 substr. MG1655]
GenPept817582828oligopeptide ABC transporter periplasmic binding protein
GenPept549812734oligopeptide transporter subunit
GenPept359331860oligopeptide transporter subunit
GenPept304925periplasmic oligopeptide binding protein
GenPept1805524Periplasmic oligopeptide-binding protein precursor
GenPept1787495oligopeptide ABC transporter periplasmic binding protein
GenPept585619OPPA_ECOLI RecName: Full=Periplasmic oligopeptide-binding protein; Flags: Precursor
GenPept682118773oligopeptide transporter subunit
GenPept732686960peptide ABC transporter substrate-binding protein
GenPept817586969oligopeptide ABC transporter periplasmic binding protein
GenPept817591110oligopeptide ABC transporter periplasmic binding protein
GenPept85674884oligopeptide transporter subunit
GenPept89108089 oligopeptide transporter subunit [Escherichia coli str. K-12 substr. W3110]
GenPept817578689oligopeptide ABC transporter periplasmic binding protein
GenPept817574547oligopeptide ABC transporter periplasmic binding protein
GenPept7428797F64871 oligopeptide-binding protein precursor - Escherichia coli
GenPept16129204 oligopeptide transporter subunit [Escherichia coli str. K-12 substr. MG1655]
GenBankAAB00918.1 periplasmic oligopeptide binding protein [Escherichia coli]
GenBankAAC74325.1 oligopeptide transporter subunit [Escherichia coli str. K-12 substr. MG1655]