University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P23873.1
Original Database ID ref NP_416025.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation hipb_ecoli recname: full=hth-type
transcriptional regulator hipb
Sequence Length 88

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region6-88
Protein Length88
Template PDB Code2wiuB
Template Region6-86
Sequence Identity100%
E-Value0
GA3411
MPQS2.01818
z-DOPE-1.45
TSVMod MethodMSALL
TSVMod RMSD2.01
TSVMod NO350.88
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2wiumercury-modified bacterial persistence regulator hipba
DBALI2wiuB 
JenaImageLibrary2wiu 
Target Sequence
UniProtKBD8BUC9SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:EFI89733.1};
InterProD8BUC9 
PFAMD8BUC9 
ProdomD8BUC9 
UniProtKBA0A074HW20SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KEN99270.1};
InterProA0A074HW20 
PFAMA0A074HW20 
ProdomA0A074HW20 
UniProtKBA0A079D1E8SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDY15656.1};
InterProA0A079D1E8 
PFAMA0A079D1E8 
ProdomA0A079D1E8 
UniProtKBA0A079H3Z6SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDY95771.1};
InterProA0A079H3Z6 
PFAMA0A079H3Z6 
ProdomA0A079H3Z6 
UniProtKBA0A080ER91SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KEN49241.1};
InterProA0A080ER91 
PFAMA0A080ER91 
ProdomA0A080ER91 
UniProtKBA0A080F799SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KEN57328.1};
InterProA0A080F799 
PFAMA0A080F799 
ProdomA0A080F799 
UniProtKBA0A080GN49SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KEN90943.1};
InterProA0A080GN49 
PFAMA0A080GN49 
ProdomA0A080GN49 
UniProtKBA0A0E0TY54SubName: Full=Transcriptional regulator protein HipB {ECO:0000313|EMBL:AEE56523.1};
InterProA0A0E0TY54 
PFAMA0A0E0TY54 
ProdomA0A0E0TY54 
UniProtKBA0A0E1M1S9SubName: Full=Antitoxin of HipAB toxin-antitoxin system {ECO:0000313|EMBL:AJF56349.1};
InterProA0A0E1M1S9 
PFAMA0A0E1M1S9 
ProdomA0A0E1M1S9 
UniProtKBA0A0G3HLE3SubName: Full=Antitoxin of HipAB toxin-antitoxin system protein {ECO:0000313|EMBL:AKK12783.1};
InterProA0A0G3HLE3 
PFAMA0A0G3HLE3 
ProdomA0A0G3HLE3 
UniProtKBA0A0H3X558SubName: Full=DNA-binding transcriptional regulator {ECO:0000313|EMBL:AKM35020.1};
InterProA0A0H3X558 
PFAMA0A0H3X558 
ProdomA0A0H3X558 
UniProtKBA0A071DU02SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDZ40050.1};
InterProA0A071DU02 
PFAMA0A071DU02 
ProdomA0A071DU02 
UniProtKBA0A071CBA3SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDZ16230.1};
InterProA0A071CBA3 
PFAMA0A071CBA3 
ProdomA0A071CBA3 
UniProtKBE9XYZ5SubName: Full=Helix-turn-helix protein;
InterProE9XYZ5 
PFAME9XYZ5 
ProdomE9XYZ5 
UniProtKBM8PRH6SubName: Full=Antitoxin HipB;
InterProM8PRH6 
PFAMM8PRH6 
ProdomM8PRH6 
UniProtKBF4M8B4SubName: Full=Transcriptional regulator protein HipB;
InterProF4M8B4 
PFAMF4M8B4 
ProdomF4M8B4 
UniProtKBM8RTQ6SubName: Full=Antitoxin HipB;
InterProM8RTQ6 
PFAMM8RTQ6 
ProdomM8RTQ6 
UniProtKBF9R2K5SubName: Full=Antitoxin HipB;
InterProF9R2K5 
PFAMF9R2K5 
ProdomF9R2K5 
UniProtKBM8PBZ5SubName: Full=Antitoxin HipB;
InterProM8PBZ5 
PFAMM8PBZ5 
ProdomM8PBZ5 
UniProtKBG0FFR2SubName: Full=HTH-type transcriptional regulator hipB {ECO:0000313|EMBL:AEJ56559.1};
InterProG0FFR2 
PFAMG0FFR2 
ProdomG0FFR2 
UniProtKBG2F6R4SubName: Full=Antitoxin HipB;
InterProG2F6R4 
PFAMG2F6R4 
ProdomG2F6R4 
UniProtKBE9WEP3SubName: Full=Helix-turn-helix protein;
InterProE9WEP3 
PFAME9WEP3 
ProdomE9WEP3 
UniProtKBM8T6P7SubName: Full=Antitoxin HipB;
InterProM8T6P7 
PFAMM8T6P7 
ProdomM8T6P7 
UniProtKBM8MGX5SubName: Full=Antitoxin HipB;
InterProM8MGX5 
PFAMM8MGX5 
ProdomM8MGX5 
UniProtKBH4VW19SubName: Full=HTH-type transcriptional regulator hipB;
InterProH4VW19 
PFAMH4VW19 
ProdomH4VW19 
UniProtKBH4VFM6SubName: Full=HTH-type transcriptional regulator hipB;
InterProH4VFM6 
PFAMH4VFM6 
ProdomH4VFM6 
UniProtKBB1IRV1SubName: Full=Transcriptional regulator, XRE family;
InterProB1IRV1 
PFAMB1IRV1 
ProdomB1IRV1 
UniProtKBL3ZWZ5SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3ZWZ5 
PFAML3ZWZ5 
ProdomL3ZWZ5 
UniProtKBB3XA43SubName: Full=Transcriptional regulator HipB;
InterProB3XA43 
PFAMB3XA43 
ProdomB3XA43 
UniProtKBH4V0F9SubName: Full=HipB Polypeptide {ECO:0000313|EMBL:EHV59263.1};
InterProH4V0F9 
PFAMH4V0F9 
ProdomH4V0F9 
UniProtKBC4ZWS5SubName: Full=DNA-binding transcriptional regulator;
InterProC4ZWS5 
PFAMC4ZWS5 
ProdomC4ZWS5 
UniProtKBC6UHR6SubName: Full=DNA-binding transcriptional regulator;
InterProC6UHR6 
PFAMC6UHR6 
ProdomC6UHR6 
UniProtKBM8LRB8SubName: Full=Antitoxin HipB;
InterProM8LRB8 
PFAMM8LRB8 
ProdomM8LRB8 
UniProtKBD7Y251SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:EFJ98276.1};
InterProD7Y251 
PFAMD7Y251 
ProdomD7Y251 
UniProtKBM8LPE8SubName: Full=Antitoxin HipB;
InterProM8LPE8 
PFAMM8LPE8 
ProdomM8LPE8 
UniProtKBD8AU29SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:EFK13362.1};
InterProD8AU29 
PFAMD8AU29 
ProdomD8AU29 
UniProtKBL5GBY5SubName: Full=HTH-type transcriptional regulator hipB;
InterProL5GBY5 
PFAML5GBY5 
ProdomL5GBY5 
UniProtKBL4P0V3SubName: Full=HTH-type transcriptional regulator hipB;
InterProL4P0V3 
PFAML4P0V3 
ProdomL4P0V3 
UniProtKBL3QWP4SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3QWP4 
PFAML3QWP4 
ProdomL3QWP4 
UniProtKBI2YHJ2SubName: Full=HTH-type transcriptional regulator HipB;
InterProI2YHJ2 
PFAMI2YHJ2 
ProdomI2YHJ2 
UniProtKBI2ZT68SubName: Full=HTH-type transcriptional regulator HipB;
InterProI2ZT68 
PFAMI2ZT68 
ProdomI2ZT68 
UniProtKBI2XEW3SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:EII47533.1};
InterProI2XEW3 
PFAMI2XEW3 
ProdomI2XEW3 
UniProtKBL2V3A1SubName: Full=HTH-type transcriptional regulator hipB {ECO:0000313|EMBL:ELC08865.1};
InterProL2V3A1 
PFAML2V3A1 
ProdomL2V3A1 
UniProtKBK5H2B2SubName: Full=Protein hipB;
InterProK5H2B2 
PFAMK5H2B2 
ProdomK5H2B2 
UniProtKBL3IBS5SubName: Full=HTH-type transcriptional regulator hipB {ECO:0000313|EMBL:ELD70963.1};
InterProL3IBS5 
PFAML3IBS5 
ProdomL3IBS5 
UniProtKBK3KT23SubName: Full=Toxin-antitoxin system, antitoxin component, Xre family {ECO:0000313|EMBL:EKI53593.1};
InterProK3KT23 
PFAMK3KT23 
ProdomK3KT23 
UniProtKBI2R2Y9SubName: Full=HTH-type transcriptional regulator hipB;
InterProI2R2Y9 
PFAMI2R2Y9 
ProdomI2R2Y9 
UniProtKBL3ULG1SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3ULG1 
PFAML3ULG1 
ProdomL3ULG1 
UniProtKBL3RKT3SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3RKT3 
PFAML3RKT3 
ProdomL3RKT3 
UniProtKBA0A029KUV0SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:EZJ76894.1};
InterProA0A029KUV0 
PFAMA0A029KUV0 
ProdomA0A029KUV0 
UniProtKBM8MV47SubName: Full=Antitoxin HipB;
InterProM8MV47 
PFAMM8MV47 
ProdomM8MV47 
UniProtKBA0A029MTP0SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:EZK01191.1};
InterProA0A029MTP0 
PFAMA0A029MTP0 
ProdomA0A029MTP0 
UniProtKBM8VYZ7SubName: Full=Antitoxin HipB;
InterProM8VYZ7 
PFAMM8VYZ7 
ProdomM8VYZ7 
UniProtKBA0A071AF09SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDY57509.1};
InterProA0A071AF09 
PFAMA0A071AF09 
ProdomA0A071AF09 
UniProtKBA0A079F2U2SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDY51052.1};
InterProA0A079F2U2 
PFAMA0A079F2U2 
ProdomA0A079F2U2 
UniProtKBA0A0A0FE15SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:KGM61381.1};
InterProA0A0A0FE15 
PFAMA0A0A0FE15 
ProdomA0A0A0FE15 
UniProtKBI2I899SubName: Full=Antitoxin HipB;
InterProI2I899 
PFAMI2I899 
ProdomI2I899 
UniProtKBI4TEA3SubName: Full=DNA-binding transcriptional regulator HipB;
InterProI4TEA3 
PFAMI4TEA3 
ProdomI4TEA3 
UniProtKBL3KRJ6SubName: Full=HTH-type transcriptional regulator hipB {ECO:0000313|EMBL:ELE00864.1};
InterProL3KRJ6 
PFAML3KRJ6 
ProdomL3KRJ6 
UniProtKBL3WX74SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3WX74 
PFAML3WX74 
ProdomL3WX74 
UniProtKBL8C5A9SubName: Full=HipB protein;
InterProL8C5A9 
PFAML8C5A9 
ProdomL8C5A9 
UniProtKBC6EEL0SubName: Full=Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACT29168.1};
InterProC6EEL0 
PFAMC6EEL0 
ProdomC6EEL0 
UniProtKBE3PM08SubName: Full=Putative HipB DNA-binding transcriptional regulator {ECO:0000313|EMBL:CBJ01082.1};
InterProE3PM08 
PFAME3PM08 
ProdomE3PM08 
UniProtKBD8B9S0SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:EFJ64180.1};
InterProD8B9S0 
PFAMD8B9S0 
ProdomD8B9S0 
UniProtKBM7WBU4SubName: Full=DNA-binding transcriptional regulator;
InterProM7WBU4 
PFAMM7WBU4 
ProdomM7WBU4 
UniProtKBA0A070SLR8SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDX18972.1};
InterProA0A070SLR8 
PFAMA0A070SLR8 
ProdomA0A070SLR8 
UniProtKBM2N069SubName: Full=Putative HipB DNA-binding transcriptional regulator;
InterProM2N069 
PFAMM2N069 
ProdomM2N069 
UniProtKBA0A070TTC4SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDX32910.1};
InterProA0A070TTC4 
PFAMA0A070TTC4 
ProdomA0A070TTC4 
UniProtKBI2YBD3SubName: Full=HTH-type transcriptional regulator HipB;
InterProI2YBD3 
PFAMI2YBD3 
ProdomI2YBD3 
UniProtKBC5W4D1SubName: Full=Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACT29168.1};
InterProC5W4D1 
PFAMC5W4D1 
ProdomC5W4D1 
UniProtKBM8RCJ4SubName: Full=Antitoxin HipB;
InterProM8RCJ4 
PFAMM8RCJ4 
ProdomM8RCJ4 
UniProtKBA0A070Y0Q7SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDX84721.1};
InterProA0A070Y0Q7 
PFAMA0A070Y0Q7 
ProdomA0A070Y0Q7 
UniProtKBA0A080I500SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KEO25124.1};
InterProA0A080I500 
PFAMA0A080I500 
ProdomA0A080I500 
UniProtKBI4SDP1SubName: Full=DNA-binding transcriptional regulator HipB {ECO:0000313|EMBL:EIL48582.1};
InterProI4SDP1 
PFAMI4SDP1 
ProdomI4SDP1 
UniProtKBL3VVX6SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3VVX6 
PFAML3VVX6 
ProdomL3VVX6 
UniProtKBD7ZRJ5SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:EFK26489.1};
InterProD7ZRJ5 
PFAMD7ZRJ5 
ProdomD7ZRJ5 
UniProtKBM8P656SubName: Full=Antitoxin HipB;
InterProM8P656 
PFAMM8P656 
ProdomM8P656 
UniProtKBI4JA21SubName: Full=HTH-type transcriptional regulator hipB {ECO:0000313|EMBL:EIF86080.1};
InterProI4JA21 
PFAMI4JA21 
ProdomI4JA21 
UniProtKBL3EZT7SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3EZT7 
PFAML3EZT7 
ProdomL3EZT7 
UniProtKBL3HRV4SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3HRV4 
PFAML3HRV4 
ProdomL3HRV4 
UniProtKBL3TSM4SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3TSM4 
PFAML3TSM4 
ProdomL3TSM4 
UniProtKBL3VHB1SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3VHB1 
PFAML3VHB1 
ProdomL3VHB1 
UniProtKBG2AUL3SubName: Full=HTH-type transcriptional regulator hipB;
InterProG2AUL3 
PFAMG2AUL3 
ProdomG2AUL3 
UniProtKBB1XE96SubName: Full=DNA-binding transcriptional regulator;
InterProB1XE96 
PFAMB1XE96 
ProdomB1XE96 
UniProtKBL3LIV7SubName: Full=HTH-type transcriptional regulator hipB;
InterProL3LIV7 
PFAML3LIV7 
ProdomL3LIV7 
UniProtKBM7UXS3SubName: Full=DNA-binding transcriptional regulator;
InterProM7UXS3 
PFAMM7UXS3 
ProdomM7UXS3 
UniProtKBC9QVW1SubName: Full=Transcriptional regulator, XRE family;
InterProC9QVW1 
PFAMC9QVW1 
ProdomC9QVW1 
UniProtKBH4UJ02SubName: Full=HTH-type transcriptional regulator hipB {ECO:0000313|EMBL:EHV59552.1};
InterProH4UJ02 
PFAMH4UJ02 
ProdomH4UJ02 
UniProtKBH9USD9SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:AFG40432.1};
InterProH9USD9 
PFAMH9USD9 
ProdomH9USD9 
UniProtKBL8CKM4SubName: Full=HipB protein;
InterProL8CKM4 
PFAML8CKM4 
ProdomL8CKM4 
UniProtKBE1HJW2SubName: Full=HTH-type transcriptional regulator HipB {ECO:0000313|EMBL:EFK91784.1};
InterProE1HJW2 
PFAME1HJW2 
ProdomE1HJW2 
UniProtKBM8U671SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:EMV61614.1};
InterProM8U671 
PFAMM8U671 
ProdomM8U671 
UniProtKBE6AYJ6SubName: Full=HTH-type transcriptional regulator hipB {ECO:0000313|EMBL:EFV00045.1};
InterProE6AYJ6 
PFAME6AYJ6 
ProdomE6AYJ6 
UniProtKBE9WSX3SubName: Full=Helix-turn-helix protein;
InterProE9WSX3 
PFAME9WSX3 
ProdomE9WSX3 
UniProtKBA0A071BVM5SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDY87249.1};
InterProA0A071BVM5 
PFAMA0A071BVM5 
ProdomA0A071BVM5 
UniProtKBA0A073H6L2SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KEJ69072.1};
InterProA0A073H6L2 
PFAMA0A073H6L2 
ProdomA0A073H6L2 
UniProtKBA0A079FP85SubName: Full=Antitoxin HipB {ECO:0000313|EMBL:KDY58294.1};
InterProA0A079FP85 
PFAMA0A079FP85 
ProdomA0A079FP85 
UniProtKBH0QCV1SubName: Full=DNA-binding transcriptional regulator;
InterProH0QCV1 
PFAMH0QCV1 
ProdomH0QCV1 
UniProtKBE9Y9J7SubName: Full=Helix-turn-helix protein {ECO:0000313|EMBL:EGB68918.1};
InterProE9Y9J7 
PFAME9Y9J7 
ProdomE9Y9J7 
UniProtKBM8NVR2SubName: Full=Antitoxin HipB;
InterProM8NVR2 
PFAMM8NVR2 
ProdomM8NVR2