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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P24244
Original Database ID ref YP_001165313.1
Organism Citrobacter freundii, Escherichia coli, etc.
Annotation recname: full=putative cytochrome
bd-ii ubiquinol oxidase subunit
appx;
Sequence Length 30

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

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Target Region1-30
Protein Length30
Template PDB Code3emlA
Template Region12-39
Sequence Identity21%
E-Value0
GA3410.02
MPQS0.828
z-DOPE2.98
TSVMod MethodMTALL
TSVMod RMSD4.856
TSVMod NO350.301
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Sequence Model Coverage Summary
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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3emlthe 2.6 a crystal structure of a human a2a adenosine receptor bound to zm241385.
DBALI3emlA 
JenaImageLibrary3eml 
Target Sequence
UniProtKBI4Q2Q2SubName: Full=Uncharacterized protein;
InterProI4Q2Q2 
PFAMI4Q2Q2 
ProdomI4Q2Q2 
UniProtKBA0A0E3MYJ8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKA89960.1};
InterProA0A0E3MYJ8 
PFAMA0A0E3MYJ8 
ProdomA0A0E3MYJ8 
UniProtKBA0A0G2XDS4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKI67166.1};
InterProA0A0G2XDS4 
PFAMA0A0G2XDS4 
ProdomA0A0G2XDS4 
UniProtKBA0A0I0DTY1SubName: Full=Membrane protein {ECO:0000313|EMBL:CSN01331.1};
InterProA0A0I0DTY1 
PFAMA0A0I0DTY1 
ProdomA0A0I0DTY1 
UniProtKBA0A0J3W2F1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KME71863.1};
InterProA0A0J3W2F1 
PFAMA0A0J3W2F1 
ProdomA0A0J3W2F1 
UniProtKBC9QZ97SubName: Full=Membrane bound YbgT family protein;Flags: Precursor;
InterProC9QZ97 
PFAMC9QZ97 
ProdomC9QZ97 
UniProtKBC6EHM8SubName: Full=Membrane bound YbgT family protein {ECO:0000313|EMBL:ACT29637.1};
InterProC6EHM8 
PFAMC6EHM8 
ProdomC6EHM8 
UniProtKBC4ZQA5SubName: Full=Putative uncharacterized protein yccB;
InterProC4ZQA5 
PFAMC4ZQA5 
ProdomC4ZQA5 
UniProtKBE8HDD7SubName: Full=Uncharacterized protein;
InterProE8HDD7 
PFAME8HDD7 
ProdomE8HDD7 
UniProtKBE4PCD7SubName: Full=Uncharacterized protein;
InterProE4PCD7 
PFAME4PCD7 
ProdomE4PCD7 
UniProtKBE8IJK3SubName: Full=Uncharacterized protein;
InterProE8IJK3 
PFAME8IJK3 
ProdomE8IJK3 
UniProtKBA0A0E1ZS75SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIL31592.1};
InterProA0A0E1ZS75 
PFAMA0A0E1ZS75 
ProdomA0A0E1ZS75 
UniProtKBA0A0E1LVQ5SubName: Full=Putative cytochrome bd-II oxidase subunit {ECO:0000313|EMBL:AJF55747.1};
InterProA0A0E1LVQ5 
PFAMA0A0E1LVQ5 
ProdomA0A0E1LVQ5 
UniProtKBE8JCQ8SubName: Full=Putative uncharacterized protein;
InterProE8JCQ8 
PFAME8JCQ8 
ProdomE8JCQ8 
UniProtKBI4J2Q6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIF83515.1};
InterProI4J2Q6 
PFAMI4J2Q6 
ProdomI4J2Q6 
UniProtKBI4SUV7SubName: Full=Membrane protein;
InterProI4SUV7 
PFAMI4SUV7 
ProdomI4SUV7 
UniProtKBI4TIS5SubName: Full=Membrane protein;
InterProI4TIS5 
PFAMI4TIS5 
ProdomI4TIS5 
UniProtKBI4TIY7SubName: Full=Membrane protein;
InterProI4TIY7 
PFAMI4TIY7 
ProdomI4TIY7 
UniProtKBI4SAU9SubName: Full=Membrane protein {ECO:0000313|EMBL:EIL47590.1};
InterProI4SAU9 
PFAMI4SAU9 
ProdomI4SAU9 
UniProtKBJ9ZQG5SubName: Full=Uncharacterized protein;
InterProJ9ZQG5 
PFAMJ9ZQG5 
ProdomJ9ZQG5 
UniProtKBJ7QZL5SubName: Full=Escherichia coli IMT2125 genomic chromosome, IMT2125 {ECO:0000313|EMBL:CCJ43522.1};SubName: Full=Small predicted membrane protein {ECO:0000313|EMBL:CKH98775.1};SubName: Full=Uncharacteri
InterProJ7QZL5 
PFAMJ7QZL5 
ProdomJ7QZL5 
UniProtKBK0AQU9SubName: Full=Uncharacterized protein;
InterProK0AQU9 
PFAMK0AQU9 
ProdomK0AQU9 
UniProtKBI4UP86SubName: Full=Membrane protein;
InterProI4UP86 
PFAMI4UP86 
ProdomI4UP86 
UniProtKBG5WQB6SubName: Full=Putative uncharacterized protein;
InterProG5WQB6 
PFAMG5WQB6 
ProdomG5WQB6 
UniProtKBE1RVH5SubName: Full=Membrane protein;
InterProE1RVH5 
PFAME1RVH5 
ProdomE1RVH5 
UniProtKBC2DK99SubName: Full=Membrane bound YbgT-like protein;
InterProC2DK99 
PFAMC2DK99 
ProdomC2DK99 
UniProtKBG5W133SubName: Full=Putative uncharacterized protein;
InterProG5W133 
PFAMG5W133 
ProdomG5W133 
UniProtKBG5TG16SubName: Full=Putative uncharacterized protein;
InterProG5TG16 
PFAMG5TG16 
ProdomG5TG16 
UniProtKBF9HTL0SubName: Full=Uncharacterized protein;
InterProF9HTL0 
PFAMF9HTL0 
ProdomF9HTL0 
UniProtKBF4UL36SubName: Full=Putative periplasmic protein;
InterProF4UL36 
PFAMF4UL36 
ProdomF4UL36 
UniProtKBH1BW26SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EHP66201.1};
InterProH1BW26 
PFAMH1BW26 
ProdomH1BW26 
UniProtKBG5XUI9SubName: Full=Putative uncharacterized protein;
InterProG5XUI9 
PFAMG5XUI9 
ProdomG5XUI9 
UniProtKBI2PAH5SubName: Full=Uncharacterized protein;
InterProI2PAH5 
PFAMI2PAH5 
ProdomI2PAH5 
UniProtKBI2I980SubName: Full=Uncharacterized protein;
InterProI2I980 
PFAMI2I980 
ProdomI2I980 
UniProtKBI2R4Q2SubName: Full=Uncharacterized protein;
InterProI2R4Q2 
PFAMI2R4Q2 
ProdomI2R4Q2 
UniProtKBI4NV25SubName: Full=Uncharacterized protein;
InterProI4NV25 
PFAMI4NV25 
ProdomI4NV25 
UniProtKBA5A610RecName: Full=Uncharacterized protein YccB;
InterProA5A610 
PFAMA5A610 
ProdomA5A610 
UniProtKBA7ZK82SubName: Full=Putative cyd operon protein YbgT {ECO:0000313|EMBL:ABV20155.1};
InterProA7ZK82 
PFAMA7ZK82 
ProdomA7ZK82 
UniProtKBG5UQ94SubName: Full=Putative uncharacterized protein;
InterProG5UQ94 
PFAMG5UQ94 
ProdomG5UQ94 
UniProtKBE9W5R4SubName: Full=Membrane bound YbgT protein;
InterProE9W5R4 
PFAME9W5R4 
ProdomE9W5R4 
UniProtKBE9WD36SubName: Full=Membrane bound YbgT protein;
InterProE9WD36 
PFAME9WD36 
ProdomE9WD36 
UniProtKBE9V4V2SubName: Full=Membrane bound YbgT protein;
InterProE9V4V2 
PFAME9V4V2 
ProdomE9V4V2 
UniProtKBE9YSK0SubName: Full=Membrane bound YbgT protein {ECO:0000313|EMBL:EGB62651.1};
InterProE9YSK0 
PFAME9YSK0 
ProdomE9YSK0 
UniProtKBE9YAY4SubName: Full=Membrane bound YbgT protein {ECO:0000313|EMBL:EGB68337.1};
InterProE9YAY4 
PFAME9YAY4 
ProdomE9YAY4 
UniProtKBF4SX61SubName: Full=Putative periplasmic protein {ECO:0000313|EMBL:EGI17120.1};
InterProF4SX61 
PFAMF4SX61 
ProdomF4SX61 
UniProtKBE9XXG9SubName: Full=Membrane bound YbgT protein;
InterProE9XXG9 
PFAME9XXG9 
ProdomE9XXG9 
UniProtKBE8Y2S3SubName: Full=Membrane bound YbgT family protein {ECO:0000313|EMBL:ADX51444.1};
InterProE8Y2S3 
PFAME8Y2S3 
ProdomE8Y2S3 
UniProtKBF9CG56SubName: Full=Putative uncharacterized protein;
InterProF9CG56 
PFAMF9CG56 
ProdomF9CG56 
UniProtKBG2F9N5SubName: Full=Putative uncharacterized protein;
InterProG2F9N5 
PFAMG2F9N5 
ProdomG2F9N5 
UniProtKBI4PSS2SubName: Full=Uncharacterized protein;
InterProI4PSS2 
PFAMI4PSS2 
ProdomI4PSS2 
UniProtKBI4NN53SubName: Full=Uncharacterized protein;
InterProI4NN53 
PFAMI4NN53 
ProdomI4NN53 
UniProtKBA0A024KTQ1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDP68297.1};
InterProA0A024KTQ1 
PFAMA0A024KTQ1 
ProdomA0A024KTQ1 
UniProtKBK0BKP7SubName: Full=Uncharacterized protein;
InterProK0BKP7 
PFAMK0BKP7 
ProdomK0BKP7 
UniProtKBA0A0C7MLM7SubName: Full=Membrane protein {ECO:0000313|EMBL:CEP58119.1};
InterProA0A0C7MLM7 
PFAMA0A0C7MLM7 
ProdomA0A0C7MLM7 
UniProtKBA0A0G3KU37SubName: Full=Membrane protein {ECO:0000313|EMBL:AKK56833.1};
InterProA0A0G3KU37 
PFAMA0A0G3KU37 
ProdomA0A0G3KU37 
UniProtKBE1PFG0SubName: Full=Uncharacterized protein;
InterProE1PFG0 
PFAME1PFG0 
ProdomE1PFG0 
UniProtKBE8IXR8SubName: Full=Uncharacterized protein;
InterProE8IXR8 
PFAME8IXR8 
ProdomE8IXR8 
UniProtKBE9XMY3SubName: Full=Membrane bound YbgT protein {ECO:0000313|EMBL:EGB71729.1};
InterProE9XMY3 
PFAME9XMY3 
ProdomE9XMY3 
UniProtKBF4U797SubName: Full=Putative periplasmic protein;
InterProF4U797 
PFAMF4U797 
ProdomF4U797 
UniProtKBF4VTB8SubName: Full=Putative periplasmic protein {ECO:0000313|EMBL:EGI51295.1};
InterProF4VTB8 
PFAMF4VTB8 
ProdomF4VTB8 
UniProtKBG5WHQ1SubName: Full=Putative uncharacterized protein;
InterProG5WHQ1 
PFAMG5WHQ1 
ProdomG5WHQ1 
UniProtKBH4FG07SubName: Full=Uncharacterized protein;
InterProH4FG07 
PFAMH4FG07 
ProdomH4FG07 
UniProtKBI4TSP1SubName: Full=Membrane protein;
InterProI4TSP1 
PFAMI4TSP1 
ProdomI4TSP1 
UniProtKBI4Q514SubName: Full=Uncharacterized protein;
InterProI4Q514 
PFAMI4Q514 
ProdomI4Q514 
UniProtKBH1F5V0SubName: Full=Putative uncharacterized protein;
InterProH1F5V0 
PFAMH1F5V0 
ProdomH1F5V0 
UniProtKBA0A064TU60SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDG97760.1};
InterProA0A064TU60 
PFAMA0A064TU60 
ProdomA0A064TU60 
UniProtKBH1DQI9SubName: Full=Putative uncharacterized protein;
InterProH1DQI9 
PFAMH1DQI9 
ProdomH1DQI9 
UniProtKBA0A0A0FAS1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGM59438.1};
InterProA0A0A0FAS1 
PFAMA0A0A0FAS1 
ProdomA0A0A0FAS1 
UniProtKBE9VK88SubName: Full=Membrane bound YbgT protein;
InterProE9VK88 
PFAME9VK88 
ProdomE9VK88 
UniProtKBG5YDM0SubName: Full=Putative uncharacterized protein;
InterProG5YDM0 
PFAMG5YDM0 
ProdomG5YDM0 
UniProtKBI4SSY9SubName: Full=Membrane protein;
InterProI4SSY9 
PFAMI4SSY9 
ProdomI4SSY9 
UniProtKBA0A0A1I8X6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDX06266.1};
InterProA0A0A1I8X6 
PFAMA0A0A1I8X6 
ProdomA0A0A1I8X6 
UniProtKBE0QXF7SubName: Full=Membrane protein;
InterProE0QXF7 
PFAME0QXF7 
ProdomE0QXF7 
UniProtKBE9X5G2SubName: Full=Membrane bound YbgT protein;
InterProE9X5G2 
PFAME9X5G2 
ProdomE9X5G2 
UniProtKBF9QWF0SubName: Full=Putative uncharacterized protein;
InterProF9QWF0 
PFAMF9QWF0 
ProdomF9QWF0 
UniProtKBH6MB17SubName: Full=Uncharacterized protein;
InterProH6MB17 
PFAMH6MB17 
ProdomH6MB17 
UniProtKBI4R051SubName: Full=Uncharacterized protein;
InterProI4R051 
PFAMI4R051 
ProdomI4R051 
UniProtKBE9WQI9SubName: Full=Membrane bound YbgT protein;
InterProE9WQI9 
PFAME9WQI9 
ProdomE9WQI9 
UniProtKBF4NDW5SubName: Full=Membrane bound YbgT-like protein {ECO:0000313|EMBL:EGJ05536.1};
InterProF4NDW5 
PFAMF4NDW5 
ProdomF4NDW5 
UniProtKBF4SMH6SubName: Full=Putative periplasmic protein {ECO:0000313|EMBL:EGI10526.1};
InterProF4SMH6 
PFAMF4SMH6 
ProdomF4SMH6 
UniProtKBF8YEA3SubName: Full=Putative uncharacterized protein;
InterProF8YEA3 
PFAMF8YEA3 
ProdomF8YEA3 
UniProtKBG5UJX9SubName: Full=Putative uncharacterized protein;
InterProG5UJX9 
PFAMG5UJX9 
ProdomG5UJX9 
UniProtKBG5TVM4SubName: Full=Putative uncharacterized protein;
InterProG5TVM4 
PFAMG5TVM4 
ProdomG5TVM4 
UniProtKBG5VKM4SubName: Full=Putative uncharacterized protein;
InterProG5VKM4 
PFAMG5VKM4 
ProdomG5VKM4 
UniProtKBF4VD06SubName: Full=Putative periplasmic protein {ECO:0000313|EMBL:EGI46757.1};
InterProF4VD06 
PFAMF4VD06 
ProdomF4VD06 
UniProtKBH1EKJ7SubName: Full=Putative uncharacterized protein;
InterProH1EKJ7 
PFAMH1EKJ7 
ProdomH1EKJ7 
UniProtKBI2PPZ9SubName: Full=Uncharacterized protein;
InterProI2PPZ9 
PFAMI2PPZ9 
ProdomI2PPZ9 
UniProtKBA7ZYT0SubName: Full=Putative cyd operon protein YccB;
InterProA7ZYT0 
PFAMA7ZYT0 
ProdomA7ZYT0 
UniProtKBE8I6A0SubName: Full=Uncharacterized protein;
InterProE8I6A0 
PFAME8I6A0 
ProdomE8I6A0 
UniProtKBE8HS86SubName: Full=Uncharacterized protein;
InterProE8HS86 
PFAME8HS86 
ProdomE8HS86 
UniProtKBG5X4T8SubName: Full=Putative uncharacterized protein;
InterProG5X4T8 
PFAMG5X4T8 
ProdomG5X4T8 
UniProtKBI4UEC3SubName: Full=Membrane protein;
InterProI4UEC3 
PFAMI4UEC3 
ProdomI4UEC3 
UniProtKBJ7QZU3SubName: Full=Escherichia coli chi7122 chi7122 genomic chromosome, chi7122 {ECO:0000313|EMBL:CCK46231.1};
InterProJ7QZU3 
PFAMJ7QZU3 
ProdomJ7QZU3 
UniProtKBI4R409SubName: Full=Uncharacterized protein;
InterProI4R409 
PFAMI4R409 
ProdomI4R409 
UniProtKBA0A0E0Y2V9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFS75162.1};
InterProA0A0E0Y2V9 
PFAMA0A0E0Y2V9 
ProdomA0A0E0Y2V9 
UniProtKBA0A0E2L7Q8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EQX30845.1};
InterProA0A0E2L7Q8 
PFAMA0A0E2L7Q8 
ProdomA0A0E2L7Q8 
UniProtKBA0A0H3EFM7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ADR26319.1};
InterProA0A0H3EFM7 
PFAMA0A0H3EFM7 
ProdomA0A0H3EFM7 
UniProtKBC6UPK2SubName: Full=Uncharacterized protein;
InterProC6UPK2 
PFAMC6UPK2 
ProdomC6UPK2 
UniProtKBE0IZ63SubName: Full=Small stress response protein {ECO:0000313|EMBL:ADT74591.1};SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFH10726.1};
InterProE0IZ63 
PFAME0IZ63 
ProdomE0IZ63 
UniProtKBG5XNX2SubName: Full=Putative uncharacterized protein;
InterProG5XNX2 
PFAMG5XNX2 
ProdomG5XNX2