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Sequence Information

Primary Database Link P24255.2
Original Database ID ref NP_417669.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation rp54_ecoli recname: full=rna polymerase
sigma-54 factor
Sequence Length 477

Dataset Information:

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Model Information

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Target Region15-473
Protein Length477
Template PDB Code5byhM
Template Region15-473
Sequence Identity89%
E-Value0
GA3411
MPQS1.68966
z-DOPE1.63
TSVMod MethodMSALL
TSVMod RMSD16.403
TSVMod NO350.149
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB5byh
DBALI5byhM 
JenaImageLibrary5byh 
Target Sequence
UniProtKBH4WG76RecName: Full=RNA polymerase sigma-54 factor;
InterProH4WG76 
PFAMH4WG76 
ProdomH4WG76 
UniProtKBC4ZSU1RecName: Full=RNA polymerase sigma-54 factor;
InterProC4ZSU1 
PFAMC4ZSU1 
ProdomC4ZSU1 
UniProtKBL3QQA3RecName: Full=RNA polymerase sigma-54 factor;
InterProL3QQA3 
PFAML3QQA3 
ProdomL3QQA3 
UniProtKBL3V987RecName: Full=RNA polymerase sigma-54 factor;
InterProL3V987 
PFAML3V987 
ProdomL3V987 
UniProtKBD8B1B1RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProD8B1B1 
PFAMD8B1B1 
ProdomD8B1B1 
UniProtKBA0A069XR56RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A069XR56 
PFAMA0A069XR56 
ProdomA0A069XR56 
UniProtKBA0A070T785RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A070T785 
PFAMA0A070T785 
ProdomA0A070T785 
UniProtKBA0A070V9T2RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A070V9T2 
PFAMA0A070V9T2 
ProdomA0A070V9T2 
UniProtKBA0A070YBD2RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A070YBD2 
PFAMA0A070YBD2 
ProdomA0A070YBD2 
UniProtKBA0A071ALH3RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A071ALH3 
PFAMA0A071ALH3 
ProdomA0A071ALH3 
UniProtKBA0A071BTX5RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A071BTX5 
PFAMA0A071BTX5 
ProdomA0A071BTX5 
UniProtKBC1NEH7SubName: Full=Sigma-N;
InterProC1NEH7 
PFAMC1NEH7 
ProdomC1NEH7 
UniProtKBL3I6L8RecName: Full=RNA polymerase sigma-54 factor;
InterProL3I6L8 
PFAML3I6L8 
ProdomL3I6L8 
UniProtKBK3GXJ9RecName: Full=RNA polymerase sigma-54 factor;
InterProK3GXJ9 
PFAMK3GXJ9 
ProdomK3GXJ9 
UniProtKBN2R8F1RecName: Full=RNA polymerase sigma-54 factor;
InterProN2R8F1 
PFAMN2R8F1 
ProdomN2R8F1 
UniProtKBN4E4J5RecName: Full=RNA polymerase sigma-54 factor;
InterProN4E4J5 
PFAMN4E4J5 
ProdomN4E4J5 
UniProtKBI0ZV04RecName: Full=RNA polymerase sigma-54 factor;
InterProI0ZV04 
PFAMI0ZV04 
ProdomI0ZV04 
UniProtKBI2PKG6RecName: Full=RNA polymerase sigma-54 factor;
InterProI2PKG6 
PFAMI2PKG6 
ProdomI2PKG6 
UniProtKBN3PWJ5RecName: Full=RNA polymerase sigma-54 factor;
InterProN3PWJ5 
PFAMN3PWJ5 
ProdomN3PWJ5 
UniProtKBN4FT04RecName: Full=RNA polymerase sigma-54 factor;
InterProN4FT04 
PFAMN4FT04 
ProdomN4FT04 
UniProtKBI2X6R7RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProI2X6R7 
PFAMI2X6R7 
ProdomI2X6R7 
UniProtKBN4GB02RecName: Full=RNA polymerase sigma-54 factor;
InterProN4GB02 
PFAMN4GB02 
ProdomN4GB02 
UniProtKBI2YPN8RecName: Full=RNA polymerase sigma-54 factor;
InterProI2YPN8 
PFAMI2YPN8 
ProdomI2YPN8 
UniProtKBI2ZTR3RecName: Full=RNA polymerase sigma-54 factor;
InterProI2ZTR3 
PFAMI2ZTR3 
ProdomI2ZTR3 
UniProtKBA0A071CLY6RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A071CLY6 
PFAMA0A071CLY6 
ProdomA0A071CLY6 
UniProtKBA0A071DDE8RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A071DDE8 
PFAMA0A071DDE8 
ProdomA0A071DDE8 
UniProtKBM7W4M8RecName: Full=RNA polymerase sigma-54 factor;
InterProM7W4M8 
PFAMM7W4M8 
ProdomM7W4M8 
UniProtKBM8SSF6RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProM8SSF6 
PFAMM8SSF6 
ProdomM8SSF6 
UniProtKBM8THJ2RecName: Full=RNA polymerase sigma-54 factor;
InterProM8THJ2 
PFAMM8THJ2 
ProdomM8THJ2 
UniProtKBM9DKZ7RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProM9DKZ7 
PFAMM9DKZ7 
ProdomM9DKZ7 
UniProtKBM9GJW5RecName: Full=RNA polymerase sigma-54 factor;
InterProM9GJW5 
PFAMM9GJW5 
ProdomM9GJW5 
UniProtKBM9H3Y1RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProM9H3Y1 
PFAMM9H3Y1 
ProdomM9H3Y1 
UniProtKBN1SGP6RecName: Full=RNA polymerase sigma-54 factor;
InterProN1SGP6 
PFAMN1SGP6 
ProdomN1SGP6 
UniProtKBN2FP02RecName: Full=RNA polymerase sigma-54 factor;
InterProN2FP02 
PFAMN2FP02 
ProdomN2FP02 
UniProtKBN2GM24RecName: Full=RNA polymerase sigma-54 factor;
InterProN2GM24 
PFAMN2GM24 
ProdomN2GM24 
UniProtKBN2MQ73RecName: Full=RNA polymerase sigma-54 factor;
InterProN2MQ73 
PFAMN2MQ73 
ProdomN2MQ73 
UniProtKBM7UIP0RecName: Full=RNA polymerase sigma-54 factor;
InterProM7UIP0 
PFAMM7UIP0 
ProdomM7UIP0 
UniProtKBA0A0G3I1V4SubName: Full=RNA polymerase, sigma 54 (Sigma N) factor protein {ECO:0000313|EMBL:AKK18965.1};
InterProA0A0G3I1V4 
PFAMA0A0G3I1V4 
ProdomA0A0G3I1V4 
UniProtKBA0A0E3KPW2RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A0E3KPW2 
PFAMA0A0E3KPW2 
ProdomA0A0E3KPW2 
UniProtKBA0A073GLF5RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A073GLF5 
PFAMA0A073GLF5 
ProdomA0A073GLF5 
UniProtKBA0A073THT4RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A073THT4 
PFAMA0A073THT4 
ProdomA0A073THT4 
UniProtKBA0A074I4Y8RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A074I4Y8 
PFAMA0A074I4Y8 
ProdomA0A074I4Y8 
UniProtKBA0A074IG53RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A074IG53 
PFAMA0A074IG53 
ProdomA0A074IG53 
UniProtKBA0A079DPU9RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A079DPU9 
PFAMA0A079DPU9 
ProdomA0A079DPU9 
UniProtKBA0A079F9I4RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A079F9I4 
PFAMA0A079F9I4 
ProdomA0A079F9I4 
UniProtKBA0A079FUT1RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A079FUT1 
PFAMA0A079FUT1 
ProdomA0A079FUT1 
UniProtKBA0A079GRF6RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A079GRF6 
PFAMA0A079GRF6 
ProdomA0A079GRF6 
UniProtKBA0A080GS83RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A080GS83 
PFAMA0A080GS83 
ProdomA0A080GS83 
UniProtKBA0A0E1M1Z2RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProA0A0E1M1Z2 
PFAMA0A0E1M1Z2 
ProdomA0A0E1M1Z2 
UniProtKBN2MUE4RecName: Full=RNA polymerase sigma-54 factor;
InterProN2MUE4 
PFAMN2MUE4 
ProdomN2MUE4 
UniProtKBN2RSB7RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProN2RSB7 
PFAMN2RSB7 
ProdomN2RSB7 
UniProtKBK5GD03RecName: Full=RNA polymerase sigma-54 factor;
InterProK5GD03 
PFAMK5GD03 
ProdomK5GD03 
UniProtKBI2I6C7RecName: Full=RNA polymerase sigma-54 factor;
InterProI2I6C7 
PFAMI2I6C7 
ProdomI2I6C7 
UniProtKBL3KFH5RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProL3KFH5 
PFAML3KFH5 
ProdomL3KFH5 
UniProtKBC9QY45RecName: Full=RNA polymerase sigma-54 factor;
InterProC9QY45 
PFAMC9QY45 
ProdomC9QY45 
UniProtKBL3WF52RecName: Full=RNA polymerase sigma-54 factor;
InterProL3WF52 
PFAML3WF52 
ProdomL3WF52 
UniProtKBE3PKQ0RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProE3PKQ0 
PFAME3PKQ0 
ProdomE3PKQ0 
UniProtKBE9WI37RecName: Full=RNA polymerase sigma-54 factor;
InterProE9WI37 
PFAME9WI37 
ProdomE9WI37 
UniProtKBM2MH37RecName: Full=RNA polymerase sigma-54 factor;
InterProM2MH37 
PFAMM2MH37 
ProdomM2MH37 
UniProtKBM8Z7Q8RecName: Full=RNA polymerase sigma-54 factor;
InterProM8Z7Q8 
PFAMM8Z7Q8 
ProdomM8Z7Q8 
UniProtKBG2CQU3RecName: Full=RNA polymerase sigma-54 factor;
InterProG2CQU3 
PFAMG2CQU3 
ProdomG2CQU3 
UniProtKBH4UPR2RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProH4UPR2 
PFAMH4UPR2 
ProdomH4UPR2 
UniProtKBH4W1X1RecName: Full=RNA polymerase sigma-54 factor;
InterProH4W1X1 
PFAMH4W1X1 
ProdomH4W1X1 
UniProtKBN2KLL9RecName: Full=RNA polymerase sigma-54 factor;
InterProN2KLL9 
PFAMN2KLL9 
ProdomN2KLL9 
UniProtKBK5GGP6RecName: Full=RNA polymerase sigma-54 factor;
InterProK5GGP6 
PFAMK5GGP6 
ProdomK5GGP6 
UniProtKBN2ESA2RecName: Full=RNA polymerase sigma-54 factor;
InterProN2ESA2 
PFAMN2ESA2 
ProdomN2ESA2 
UniProtKBK3K4N7RecName: Full=RNA polymerase sigma-54 factor;
InterProK3K4N7 
PFAMK3K4N7 
ProdomK3K4N7 
UniProtKBL3WSU2RecName: Full=RNA polymerase sigma-54 factor;
InterProL3WSU2 
PFAML3WSU2 
ProdomL3WSU2 
UniProtKBH0Q7T1RecName: Full=RNA polymerase sigma-54 factor;
InterProH0Q7T1 
PFAMH0Q7T1 
ProdomH0Q7T1 
UniProtKBN4D6R9RecName: Full=RNA polymerase sigma-54 factor;
InterProN4D6R9 
PFAMN4D6R9 
ProdomN4D6R9 
UniProtKBI4J710RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProI4J710 
PFAMI4J710 
ProdomI4J710 
UniProtKBD8BYY0RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProD8BYY0 
PFAMD8BYY0 
ProdomD8BYY0 
UniProtKBL4NUJ3RecName: Full=RNA polymerase sigma-54 factor;
InterProL4NUJ3 
PFAML4NUJ3 
ProdomL4NUJ3 
UniProtKBG0F2J9RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProG0F2J9 
PFAMG0F2J9 
ProdomG0F2J9 
UniProtKBN2S8P2RecName: Full=RNA polymerase sigma-54 factor;
InterProN2S8P2 
PFAMN2S8P2 
ProdomN2S8P2 
UniProtKBN3KJC8RecName: Full=RNA polymerase sigma-54 factor;
InterProN3KJC8 
PFAMN3KJC8 
ProdomN3KJC8 
UniProtKBH4X9E2RecName: Full=RNA polymerase sigma-54 factor;
InterProH4X9E2 
PFAMH4X9E2 
ProdomH4X9E2 
UniProtKBL4K775RecName: Full=RNA polymerase sigma-54 factor;
InterProL4K775 
PFAML4K775 
ProdomL4K775 
UniProtKBF4SNS9RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProF4SNS9 
PFAMF4SNS9 
ProdomF4SNS9 
UniProtKBF9R219RecName: Full=RNA polymerase sigma-54 factor;
InterProF9R219 
PFAMF9R219 
ProdomF9R219 
UniProtKBL8BZI3RecName: Full=RNA polymerase sigma-54 factor;
InterProL8BZI3 
PFAML8BZI3 
ProdomL8BZI3 
UniProtKBG2BEA3RecName: Full=RNA polymerase sigma-54 factor;
InterProG2BEA3 
PFAMG2BEA3 
ProdomG2BEA3 
UniProtKBL4W9G5RecName: Full=RNA polymerase sigma-54 factor;
InterProL4W9G5 
PFAML4W9G5 
ProdomL4W9G5 
UniProtKBK3IGP4RecName: Full=RNA polymerase sigma-54 factor;
InterProK3IGP4 
PFAMK3IGP4 
ProdomK3IGP4 
UniProtKBG2F4T0RecName: Full=RNA polymerase sigma-54 factor;
InterProG2F4T0 
PFAMG2F4T0 
ProdomG2F4T0 
UniProtKBN2IQC6RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProN2IQC6 
PFAMN2IQC6 
ProdomN2IQC6 
UniProtKBH4V4E8RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProH4V4E8 
PFAMH4V4E8 
ProdomH4V4E8 
UniProtKBE6B598RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProE6B598 
PFAME6B598 
ProdomE6B598 
UniProtKBL3ZNC2RecName: Full=RNA polymerase sigma-54 factor;
InterProL3ZNC2 
PFAML3ZNC2 
ProdomL3ZNC2 
UniProtKBL3R9V5RecName: Full=RNA polymerase sigma-54 factor;
InterProL3R9V5 
PFAML3R9V5 
ProdomL3R9V5 
UniProtKBN4EDS8RecName: Full=RNA polymerase sigma-54 factor;
InterProN4EDS8 
PFAMN4EDS8 
ProdomN4EDS8 
UniProtKBI2QYF2RecName: Full=RNA polymerase sigma-54 factor;
InterProI2QYF2 
PFAMI2QYF2 
ProdomI2QYF2 
UniProtKBI2Y9J1RecName: Full=RNA polymerase sigma-54 factor;
InterProI2Y9J1 
PFAMI2Y9J1 
ProdomI2Y9J1 
UniProtKBN3NCH3RecName: Full=RNA polymerase sigma-54 factor;
InterProN3NCH3 
PFAMN3NCH3 
ProdomN3NCH3 
UniProtKBB1XHH7RecName: Full=RNA polymerase sigma-54 factor;
InterProB1XHH7 
PFAMB1XHH7 
ProdomB1XHH7 
UniProtKBL3M142RecName: Full=RNA polymerase sigma-54 factor;
InterProL3M142 
PFAML3M142 
ProdomL3M142 
UniProtKBD8ANJ2RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProD8ANJ2 
PFAMD8ANJ2 
ProdomD8ANJ2 
UniProtKBL3TGL8RecName: Full=RNA polymerase sigma-54 factor;
InterProL3TGL8 
PFAML3TGL8 
ProdomL3TGL8 
UniProtKBE1HKH2RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774};
InterProE1HKH2 
PFAME1HKH2 
ProdomE1HKH2 
UniProtKBH4VLH8RecName: Full=RNA polymerase sigma-54 factor;
InterProH4VLH8 
PFAMH4VLH8 
ProdomH4VLH8