University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P25718.1
Original Database ID ref NP_418028.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation amy1_ecoli recname: full=alpha-amylase;
altname: full=1,4-alpha-d-glucan
glucano hydrolase; flags: precursor
Sequence Length 676

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region70-675
Protein Length676
Template PDB Code1j0hA
Template Region1-538
Sequence Identity19%
E-Value0
GA3411
MPQS0.89585
z-DOPE0.68
TSVMod MethodMTALL
TSVMod RMSD30.39
TSVMod NO350.474
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1j0hcrystal structure of bacillus stearothermophilus neopullulanase ; EC: 3.2.1.135 ; PFAM: PF00128 PF02903 ; SCOP: 77027 77028 77029
DBALI1j0hA 
CATH2.60.40.10 Domain: 1j0hA01 Immunoglobulins (100%)
CATH3.20.20.80 Domain: 1j0hA02 Glycosidases (100%)
CATH2.60.40.1180 Domain: 1j0hA04 Golgi alpha-mannosidase II (40%)
JenaImageLibrary1j0h 
Target Sequence
UniProtKBN2VN36SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2VN36 
PFAMN2VN36 
ProdomN2VN36 
UniProtKBL2VFL4SubName: Full=Alpha-amylase {ECO:0000313|EMBL:ELC13644.1};
InterProL2VFL4 
PFAML2VFL4 
ProdomL2VFL4 
UniProtKBL2YZQ6SubName: Full=Alpha-amylase;
InterProL2YZQ6 
PFAML2YZQ6 
ProdomL2YZQ6 
UniProtKBL3EPN2SubName: Full=Alpha-amylase;
InterProL3EPN2 
PFAML3EPN2 
ProdomL3EPN2 
UniProtKBB2N792SubName: Full=Alpha amylase;
InterProB2N792 
PFAMB2N792 
ProdomB2N792 
UniProtKBA0A070Y388SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KDX85440.1};EC=3.2.1.1 {ECO:0000313|EMBL:KDX85440.1};
InterProA0A070Y388 
PFAMA0A070Y388 
ProdomA0A070Y388 
UniProtKBA0A071AIM0SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KDY58327.1};EC=3.2.1.1 {ECO:0000313|EMBL:KDY58327.1};
InterProA0A071AIM0 
PFAMA0A071AIM0 
ProdomA0A071AIM0 
UniProtKBA0A071C0S7SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KDY90935.1};EC=3.2.1.1 {ECO:0000313|EMBL:KDY90935.1};
InterProA0A071C0S7 
PFAMA0A071C0S7 
ProdomA0A071C0S7 
UniProtKBA0A071CFT6SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KDZ17884.1};EC=3.2.1.1 {ECO:0000313|EMBL:KDZ17884.1};
InterProA0A071CFT6 
PFAMA0A071CFT6 
ProdomA0A071CFT6 
UniProtKBA0A071DA90SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KDZ38329.1};EC=3.2.1.1 {ECO:0000313|EMBL:KDZ38329.1};
InterProA0A071DA90 
PFAMA0A071DA90 
ProdomA0A071DA90 
UniProtKBA0A073GJZ1SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KEJ65821.1};EC=3.2.1.1 {ECO:0000313|EMBL:KEJ65821.1};
InterProA0A073GJZ1 
PFAMA0A073GJZ1 
ProdomA0A073GJZ1 
UniProtKBK5HEK8SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProK5HEK8 
PFAMK5HEK8 
ProdomK5HEK8 
UniProtKBB1IZM1SubName: Full=Alpha amylase catalytic region;Flags: Precursor;
InterProB1IZM1 
PFAMB1IZM1 
ProdomB1IZM1 
UniProtKBK5HBP1SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProK5HBP1 
PFAMK5HBP1 
ProdomK5HBP1 
UniProtKBI0ZXL3SubName: Full=Alpha-amylase;
InterProI0ZXL3 
PFAMI0ZXL3 
ProdomI0ZXL3 
UniProtKBI2I1K4SubName: Full=Alpha-amylase;
InterProI2I1K4 
PFAMI2I1K4 
ProdomI2I1K4 
UniProtKBN2WLL3SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2WLL3 
PFAMN2WLL3 
ProdomN2WLL3 
UniProtKBN3A7W8SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN3A7W8 
PFAMN3A7W8 
ProdomN3A7W8 
UniProtKBI2Y8Q6SubName: Full=Periplasmic alpha-amylase;
InterProI2Y8Q6 
PFAMI2Y8Q6 
ProdomI2Y8Q6 
UniProtKBI2YQR9SubName: Full=Periplasmic alpha-amylase;
InterProI2YQR9 
PFAMI2YQR9 
ProdomI2YQR9 
UniProtKBN3K5Z9SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN3K5Z9 
PFAMN3K5Z9 
ProdomN3K5Z9 
UniProtKBI4UAY6SubName: Full=Periplasmic alpha-amylase;
InterProI4UAY6 
PFAMI4UAY6 
ProdomI4UAY6 
UniProtKBK3GVI2SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProK3GVI2 
PFAMK3GVI2 
ProdomK3GVI2 
UniProtKBK5BSB4SubName: Full=Alpha-amylase {ECO:0000313|EMBL:EKJ80679.1};
InterProK5BSB4 
PFAMK5BSB4 
ProdomK5BSB4 
UniProtKBA0A074I3A7SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KEN94666.1};EC=3.2.1.1 {ECO:0000313|EMBL:KEN94666.1};
InterProA0A074I3A7 
PFAMA0A074I3A7 
ProdomA0A074I3A7 
UniProtKBA0A079F2S3SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KDY51078.1};EC=3.2.1.1 {ECO:0000313|EMBL:KDY51078.1};
InterProA0A079F2S3 
PFAMA0A079F2S3 
ProdomA0A079F2S3 
UniProtKBM8YNN2SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProM8YNN2 
PFAMM8YNN2 
ProdomM8YNN2 
UniProtKBM9G287SubName: Full=Alpha-amylase {ECO:0000313|EMBL:EMX28843.1};EC=3.2.1.1 {ECO:0000313|EMBL:EMX28843.1};
InterProM9G287 
PFAMM9G287 
ProdomM9G287 
UniProtKBM9G8S9SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProM9G8S9 
PFAMM9G8S9 
ProdomM9G8S9 
UniProtKBN2FLE3SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2FLE3 
PFAMN2FLE3 
ProdomN2FLE3 
UniProtKBN2GQI3SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2GQI3 
PFAMN2GQI3 
ProdomN2GQI3 
UniProtKBN2MQX9SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2MQX9 
PFAMN2MQX9 
ProdomN2MQX9 
UniProtKBN2P3W3SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2P3W3 
PFAMN2P3W3 
ProdomN2P3W3 
UniProtKBN2RSZ5SubName: Full=Alpha-amylase {ECO:0000313|EMBL:ENB25256.1};EC=3.2.1.1 {ECO:0000313|EMBL:ENB25256.1};
InterProN2RSZ5 
PFAMN2RSZ5 
ProdomN2RSZ5 
UniProtKBN2S8N1SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2S8N1 
PFAMN2S8N1 
ProdomN2S8N1 
UniProtKBN2SMB3SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2SMB3 
PFAMN2SMB3 
ProdomN2SMB3 
UniProtKBM8YCG5SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProM8YCG5 
PFAMM8YCG5 
ProdomM8YCG5 
UniProtKBM8S5Z1SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProM8S5Z1 
PFAMM8S5Z1 
ProdomM8S5Z1 
UniProtKBM8RCG3SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProM8RCG3 
PFAMM8RCG3 
ProdomM8RCG3 
UniProtKBA0A079FLY4SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KDY59705.1};EC=3.2.1.1 {ECO:0000313|EMBL:KDY59705.1};
InterProA0A079FLY4 
PFAMA0A079FLY4 
ProdomA0A079FLY4 
UniProtKBA0A079H1A4SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KDY98340.1};EC=3.2.1.1 {ECO:0000313|EMBL:KDY98340.1};
InterProA0A079H1A4 
PFAMA0A079H1A4 
ProdomA0A079H1A4 
UniProtKBA0A080GMP5SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KEN87155.1};EC=3.2.1.1 {ECO:0000313|EMBL:KEN87155.1};
InterProA0A080GMP5 
PFAMA0A080GMP5 
ProdomA0A080GMP5 
UniProtKBA0A080HXG5SubName: Full=Alpha-amylase {ECO:0000313|EMBL:KEO21656.1};EC=3.2.1.1 {ECO:0000313|EMBL:KEO21656.1};
InterProA0A080HXG5 
PFAMA0A080HXG5 
ProdomA0A080HXG5 
UniProtKBA0A0E0U666SubName: Full=Alpha-amylase {ECO:0000313|EMBL:AEE58874.1};
InterProA0A0E0U666 
PFAMA0A0E0U666 
ProdomA0A0E0U666 
UniProtKBA0A0E1M2Z0SubName: Full=Alpha-amylase {ECO:0000313|EMBL:AJF58370.1};EC=3.2.1.1 {ECO:0000313|EMBL:AJF58370.1};
InterProA0A0E1M2Z0 
PFAMA0A0E1M2Z0 
ProdomA0A0E1M2Z0 
UniProtKBA0A0E1T5T8SubName: Full=Alpha amylase {ECO:0000313|EMBL:EDU64802.1};
InterProA0A0E1T5T8 
PFAMA0A0E1T5T8 
ProdomA0A0E1T5T8 
UniProtKBA0A0G3HMV7SubName: Full=Alpha-amylase protein {ECO:0000313|EMBL:AKK14664.1};
InterProA0A0G3HMV7 
PFAMA0A0G3HMV7 
ProdomA0A0G3HMV7 
UniProtKBA0A0H3XEC1SubName: Full=Alpha-amylase {ECO:0000313|EMBL:AKM37131.1};
InterProA0A0H3XEC1 
PFAMA0A0H3XEC1 
ProdomA0A0H3XEC1 
UniProtKBM7VDN9SubName: Full=Alpha-amylase;
InterProM7VDN9 
PFAMM7VDN9 
ProdomM7VDN9 
UniProtKBN2U7S6SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2U7S6 
PFAMN2U7S6 
ProdomN2U7S6 
UniProtKBH4XAT8SubName: Full=Alpha amylase, catalytic domain protein;
InterProH4XAT8 
PFAMH4XAT8 
ProdomH4XAT8 
UniProtKBL3QLC2SubName: Full=Alpha-amylase;
InterProL3QLC2 
PFAML3QLC2 
ProdomL3QLC2 
UniProtKBI2ZSJ1SubName: Full=Periplasmic alpha-amylase;
InterProI2ZSJ1 
PFAMI2ZSJ1 
ProdomI2ZSJ1 
UniProtKBL3LZW9SubName: Full=Alpha-amylase;
InterProL3LZW9 
PFAML3LZW9 
ProdomL3LZW9 
UniProtKBB1X8I7SubName: Full=Alpha-amylase;
InterProB1X8I7 
PFAMB1X8I7 
ProdomB1X8I7 
UniProtKBL4K5K2SubName: Full=Alpha-amylase;
InterProL4K5K2 
PFAML4K5K2 
ProdomL4K5K2 
UniProtKBL3TI60SubName: Full=Alpha-amylase;
InterProL3TI60 
PFAML3TI60 
ProdomL3TI60 
UniProtKBM7UGV4SubName: Full=Alpha-amylase;
InterProM7UGV4 
PFAMM7UGV4 
ProdomM7UGV4 
UniProtKBG0F2Q7SubName: Full=1,4-alpha-D-glucanglucanohydrolase {ECO:0000313|EMBL:AEJ58979.1};
InterProG0F2Q7 
PFAMG0F2Q7 
ProdomG0F2Q7 
UniProtKBG2BFA6SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProG2BFA6 
PFAMG2BFA6 
ProdomG2BFA6 
UniProtKBL4NQ58SubName: Full=Alpha-amylase;
InterProL4NQ58 
PFAML4NQ58 
ProdomL4NQ58 
UniProtKBN2UE58SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2UE58 
PFAMN2UE58 
ProdomN2UE58 
UniProtKBN3J5V2SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN3J5V2 
PFAMN3J5V2 
ProdomN3J5V2 
UniProtKBN2VRH7SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2VRH7 
PFAMN2VRH7 
ProdomN2VRH7 
UniProtKBH4UQV7SubName: Full=Alpha-amylase {ECO:0000313|EMBL:EHV53365.1};EC=3.2.1.1 {ECO:0000313|EMBL:EHV53365.1};
InterProH4UQV7 
PFAMH4UQV7 
ProdomH4UQV7 
UniProtKBL3R8I3SubName: Full=Alpha-amylase;
InterProL3R8I3 
PFAML3R8I3 
ProdomL3R8I3 
UniProtKBH0QDY4SubName: Full=Alpha-amylase;
InterProH0QDY4 
PFAMH0QDY4 
ProdomH0QDY4 
UniProtKBL3UC44SubName: Full=Alpha-amylase;
InterProL3UC44 
PFAML3UC44 
ProdomL3UC44 
UniProtKBL8BXZ3SubName: Full=Periplasmic alpha-amylase;EC=3.2.1.1;
InterProL8BXZ3 
PFAML8BXZ3 
ProdomL8BXZ3 
UniProtKBN2IMD4SubName: Full=Alpha-amylase {ECO:0000313|EMBL:ENA27934.1};EC=3.2.1.1 {ECO:0000313|EMBL:ENA27934.1};
InterProN2IMD4 
PFAMN2IMD4 
ProdomN2IMD4 
UniProtKBI2QWR4SubName: Full=Alpha-amylase;
InterProI2QWR4 
PFAMI2QWR4 
ProdomI2QWR4 
UniProtKBA8A629SubName: Full=Alpha-amylase, periplasmic;EC=3.2.1.1;
InterProA8A629 
PFAMA8A629 
ProdomA8A629 
UniProtKBC4ZXG2SubName: Full=Alpha-amylase;
InterProC4ZXG2 
PFAMC4ZXG2 
ProdomC4ZXG2 
UniProtKBF4M6Z3SubName: Full=Alpha-amylase;
InterProF4M6Z3 
PFAMF4M6Z3 
ProdomF4M6Z3 
UniProtKBM9EG30SubName: Full=Alpha-amylase {ECO:0000313|EMBL:EMW92157.1};EC=3.2.1.1 {ECO:0000313|EMBL:EMW92157.1};
InterProM9EG30 
PFAMM9EG30 
ProdomM9EG30 
UniProtKBH4VMP4SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProH4VMP4 
PFAMH4VMP4 
ProdomH4VMP4 
UniProtKBH9UYC5SubName: Full=Alpha-amylase {ECO:0000313|EMBL:AFG42518.1};
InterProH9UYC5 
PFAMH9UYC5 
ProdomH9UYC5 
UniProtKBF9R1P4SubName: Full=Alpha-amylase;
InterProF9R1P4 
PFAMF9R1P4 
ProdomF9R1P4 
UniProtKBL5FU74SubName: Full=Alpha-amylase;
InterProL5FU74 
PFAML5FU74 
ProdomL5FU74 
UniProtKBM8SNB5SubName: Full=Alpha-amylase {ECO:0000313|EMBL:EMV52857.1};EC=3.2.1.1 {ECO:0000313|EMBL:EMV52857.1};
InterProM8SNB5 
PFAMM8SNB5 
ProdomM8SNB5 
UniProtKBG2B142SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProG2B142 
PFAMG2B142 
ProdomG2B142 
UniProtKBM9BPY5SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProM9BPY5 
PFAMM9BPY5 
ProdomM9BPY5 
UniProtKBG2CIG9SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProG2CIG9 
PFAMG2CIG9 
ProdomG2CIG9 
UniProtKBG2F5D7SubName: Full=Alpha-amylase;
InterProG2F5D7 
PFAMG2F5D7 
ProdomG2F5D7 
UniProtKBN2KKE0SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2KKE0 
PFAMN2KKE0 
ProdomN2KKE0 
UniProtKBH4V7K6SubName: Full=Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EHV52698.1};
InterProH4V7K6 
PFAMH4V7K6 
ProdomH4V7K6 
UniProtKBN2I1B1SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2I1B1 
PFAMN2I1B1 
ProdomN2I1B1 
UniProtKBM2NMG8SubName: Full=Alpha-amylase;
InterProM2NMG8 
PFAMM2NMG8 
ProdomM2NMG8 
UniProtKBE3PMT4SubName: Full=Alpha-amylase {ECO:0000313|EMBL:CBJ03317.1};
InterProE3PMT4 
PFAME3PMT4 
ProdomE3PMT4 
UniProtKBE2WWG3SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProE2WWG3 
PFAME2WWG3 
ProdomE2WWG3 
UniProtKBN2HJD2SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2HJD2 
PFAMN2HJD2 
ProdomN2HJD2 
UniProtKBI2X666SubName: Full=Periplasmic alpha-amylase {ECO:0000313|EMBL:EII44486.1};
InterProI2X666 
PFAMI2X666 
ProdomI2X666 
UniProtKBN3LBT9SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN3LBT9 
PFAMN3LBT9 
ProdomN3LBT9 
UniProtKBK3IFR3SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProK3IFR3 
PFAMK3IFR3 
ProdomK3IFR3 
UniProtKBL3V7D2SubName: Full=Alpha-amylase;
InterProL3V7D2 
PFAML3V7D2 
ProdomL3V7D2 
UniProtKBL3WC93SubName: Full=Alpha-amylase;
InterProL3WC93 
PFAML3WC93 
ProdomL3WC93 
UniProtKBL3ZLR1SubName: Full=Alpha-amylase;
InterProL3ZLR1 
PFAML3ZLR1 
ProdomL3ZLR1 
UniProtKBL3WPF9SubName: Full=Alpha-amylase;
InterProL3WPF9 
PFAML3WPF9 
ProdomL3WPF9 
UniProtKBC9QVH3SubName: Full=Alpha amylase catalytic region;SubName: Full=Periplasmic alpha-amylase;Flags: Precursor;
InterProC9QVH3 
PFAMC9QVH3 
ProdomC9QVH3 
UniProtKBN2UFS6SubName: Full=Alpha-amylase;EC=3.2.1.1;
InterProN2UFS6 
PFAMN2UFS6 
ProdomN2UFS6