University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P26459.1
Original Database ID ref NP_415497.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation appc_ecoli recname: full=cytochrome
bd-ii oxidase subunit 1; altname:
full=cytoc hrome bd-ii oxidase
subunit i
Sequence Length 514

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region2-501
Protein Length514
Template PDB Code5doqA
Template Region4-432
Sequence Identity31%
E-Value0
GA3411
MPQS1.08536
z-DOPE0.87
TSVMod MethodMSALL
TSVMod RMSD16.885
TSVMod NO350.192
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB5doq
DBALI5doqA 
JenaImageLibrary5doq 
Target Sequence
UniProtKBB1X8T1SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProB1X8T1 
PFAMB1X8T1 
ProdomB1X8T1 
UniProtKBA0A0G3HQ33SubName: Full=Cytochrome bd-II oxidase, subunit I protein {ECO:0000313|EMBL:AKK13192.1};
InterProA0A0G3HQ33 
PFAMA0A0G3HQ33 
ProdomA0A0G3HQ33 
UniProtKBA0A090GXS7SubName: Full=Cytochrome bd-II oxidase subunit 1;EC=1.10.3.-;SubName: Full=Cytochrome d terminal oxidase subunit 1 {ECO:0000313|EMBL:AKO56535.1};
InterProA0A090GXS7 
PFAMA0A090GXS7 
ProdomA0A090GXS7 
UniProtKBC4ZQA3SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProC4ZQA3 
PFAMC4ZQA3 
ProdomC4ZQA3 
UniProtKBC9QZ99SubName: Full=Cytochrome bd ubiquinol oxidase subunit I;SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProC9QZ99 
PFAMC9QZ99 
ProdomC9QZ99 
UniProtKBF9QWE8SubName: Full=Cytochrome bd-II oxidase subunit 1;
InterProF9QWE8 
PFAMF9QWE8 
ProdomF9QWE8 
UniProtKBG2F9N7SubName: Full=Cytochrome bd-II oxidase subunit 1;
InterProG2F9N7 
PFAMG2F9N7 
ProdomG2F9N7 
UniProtKBA0A073T5V8SubName: Full=Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:KEL20908.1};EC=1.10.3.- {ECO:0000313|EMBL:KEL20908.1};
InterProA0A073T5V8 
PFAMA0A073T5V8 
ProdomA0A073T5V8 
UniProtKBH0Q9N4SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProH0Q9N4 
PFAMH0Q9N4 
ProdomH0Q9N4 
UniProtKBP26459RecName: Full=Cytochrome bd-II oxidase subunit 1;EC=1.10.3.-;AltName: Full=Cytochrome bd-II oxidase subunit I;
InterProP26459 
PFAMP26459 
ProdomP26459 
UniProtKBA0A069XHU6SubName: Full=Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:KDU27058.1};EC=1.10.3.- {ECO:0000313|EMBL:KDU27058.1};
InterProA0A069XHU6 
PFAMA0A069XHU6 
ProdomA0A069XHU6 
UniProtKBA0A069YQD3SubName: Full=Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:KDU49251.1};EC=1.10.3.- {ECO:0000313|EMBL:KDU49251.1};
InterProA0A069YQD3 
PFAMA0A069YQD3 
ProdomA0A069YQD3 
UniProtKBM2PSN3SubName: Full=Cytochrome bd-II oxidase subunit 1;
InterProM2PSN3 
PFAMM2PSN3 
ProdomM2PSN3 
UniProtKBI0ZPY3SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProI0ZPY3 
PFAMI0ZPY3 
ProdomI0ZPY3 
UniProtKBA0A8G0DKJ4SubName: Full=Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:QYQ91211.1}
InterProA0A8G0DKJ4 
PFAMA0A8G0DKJ4 
ProdomA0A8G0DKJ4 
UniProtKBA0A2S5ZUE2SubName: Full=Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:QGF38737.1}SubName: Full=Cytochrome bd-II oxidase subunit I {ECO:0000313|EMBL:SVF43677.1}EC=1.10.3.- {ECO:0000313|EMBL:SVF43677.1}Sub
InterProA0A2S5ZUE2 
PFAMA0A2S5ZUE2 
ProdomA0A2S5ZUE2 
UniProtKBA0A8F9MNJ8SubName: Full=Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:QYE24330.1}
InterProA0A8F9MNJ8 
PFAMA0A8F9MNJ8 
ProdomA0A8F9MNJ8 
UniProtKBA0A5Q3TJV7SubName: Full=Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:QGL44315.1}
InterProA0A5Q3TJV7 
PFAMA0A5Q3TJV7 
ProdomA0A5Q3TJV7 
UniProtKBB1X8T1SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProB1X8T1 
PFAMB1X8T1 
ProdomB1X8T1 
UniProtKBC4ZQA3SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProC4ZQA3 
PFAMC4ZQA3 
ProdomC4ZQA3 
UniProtKBI0ZPY3SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProI0ZPY3 
PFAMI0ZPY3 
ProdomI0ZPY3 
UniProtKBC9QZ99SubName: Full=Cytochrome bd ubiquinol oxidase subunit I;SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProC9QZ99 
PFAMC9QZ99 
ProdomC9QZ99 
UniProtKBF9QWE8SubName: Full=Cytochrome bd-II oxidase subunit 1;
InterProF9QWE8 
PFAMF9QWE8 
ProdomF9QWE8 
UniProtKBG2F9N7SubName: Full=Cytochrome bd-II oxidase subunit 1;
InterProG2F9N7 
PFAMG2F9N7 
ProdomG2F9N7 
UniProtKBH0Q9N4SubName: Full=Cytochrome bd-II oxidase, subunit I;
InterProH0Q9N4 
PFAMH0Q9N4 
ProdomH0Q9N4 
UniProtKBA0A8F8GYH0SubName: Full=Cytochrome bd-II oxidase subunit 1 {ECO:0000313|EMBL:QXZ35487.1}
InterProA0A8F8GYH0 
PFAMA0A8F8GYH0 
ProdomA0A8F8GYH0 
UniProtKBP26459.1APPC_ECOLI RecName: Full=Cytochrome bd-II oxidase subunit 1; AltName: Full=Cytochrome bd-II oxidase subunit I
InterProP26459.1 
PFAMP26459.1 
ProdomP26459.1 
UniProtKBP26459RecName: Full=Cytochrome bd-II ubiquinol oxidase subunit 1;EC=1.10.3.10;AltName: Full=Cytochrome bd-II oxidase subunit I;
InterProP26459 
PFAMP26459 
ProdomP26459 
RefSeqNP_415497.1 cytochrome bd-II oxidase, subunit I [Escherichia coli str. K-12 substr. MG1655]
RefSeqAP_001607.1 cytochrome bd-II oxidase, subunit I [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_002926031.1 cytochrome bd-II oxidase, subunit I [Escherichia coli BW2952]
RefSeqYP_001729955.1 cytochrome bd-II oxidase, subunit I [Escherichia coli str. K-12 substr. DH10B]
PDB7OSEDCytochrome bd-II ubiquinol oxidase subunit 1
PDB7OSEACytochrome bd-II ubiquinol oxidase subunit 1
GenPept899726337cytochrome d terminal oxidase subunit 1
GenPept899730723cytochrome d terminal oxidase subunit 1
GenPept932858889Cytochrome d ubiquinol oxidase subunit I
GenPept808729953cytochrome d terminal oxidase subunit 1
GenPept315135627cytochrome bd-II oxidase, subunit I
GenPept899721981cytochrome d terminal oxidase subunit 1
GenPept89107827 cytochrome bd-II oxidase, subunit I [Escherichia coli str. K-12 substr. W3110]
GenPept114068APPC_ECOLI RecName: Full=Cytochrome bd-II oxidase subunit 1; AltName: Full=Cytochrome bd-II oxidase subunit I
GenPept549812487cytochrome bd-II oxidase, subunit I
GenPept557271349cytochrome bd-II oxidase, subunit I
GenPept664683374cytochrome d terminal oxidase subunit 1
GenPept682118519cytochrome bd-II oxidase, subunit I
GenPept687676150cytochrome bd-II terminal oxidase subunit I
GenPept730582176cytochrome bd-II oxidase, subunit I
GenPept731469905cytochrome bd-II oxidase, subunit I
GenPept732685096cytochrome d terminal oxidase subunit 1
GenPept359331668cytochrome bd-II oxidase, subunit I
GenPept260449877cytochrome bd ubiquinol oxidase subunit I
GenPept16128944 cytochrome bd-II oxidase, subunit I [Escherichia coli str. K-12 substr. MG1655]
GenPept1651479cytochrome bd-II oxidase, subunit I
GenPept169888470cytochrome bd-II oxidase, subunit I
GenPept170080635 cytochrome bd-II oxidase, subunit I [Escherichia coli str. K-12 substr. DH10B]
GenPept1787212cytochrome bd-II oxidase, subunit I
GenPept238657AppC
GenPept238860702cytochrome bd-II oxidase, subunit I
GenPept238900235 cytochrome bd-II oxidase, subunit I [Escherichia coli BW2952]
GenPept78315S17958 cytochrome oxidase (EC 1.10.3.-) chain I - Escherichia coli
GenPept802134529cytochrome bd-II oxidase, subunit I
GenPept808721632cytochrome d terminal oxidase subunit 1
GenPept808734362cytochrome d terminal oxidase subunit 1
GenPept817574293cytochrome bd-II oxidase, subunit I
GenPept817578435cytochrome bd-II oxidase, subunit I
GenPept817582574cytochrome bd-II oxidase, subunit I
GenPept817586715cytochrome bd-II oxidase, subunit I
GenPept817590856cytochrome bd-II oxidase, subunit I
GenPept827617209cytochrome bd-II oxidase, subunit I protein
GenPept808717262cytochrome d terminal oxidase subunit 1
GenPept808712852cytochrome d terminal oxidase subunit 1
GenPept808708485cytochrome d terminal oxidase subunit 1
GenPept687671886cytochrome bd-II terminal oxidase subunit I
GenPept808699734cytochrome d terminal oxidase subunit 1
GenPept808704107cytochrome d terminal oxidase subunit 1
GenPept827621479cytochrome bd-II oxidase, subunit I protein
GenBankAAB20284.1 AppC [Escherichia coli]
GenBankAAC74063.1 cytochrome bd-II oxidase, subunit I [Escherichia coli str. K-12 substr. MG1655]
GenBankACB02177.1 cytochrome bd-II oxidase, subunit I [Escherichia coli str. K-12 substr. DH10B]
GenBankACR62700.1 cytochrome bd-II oxidase, subunit I [Escherichia coli BW2952]
GenBankACX40299.1 cytochrome bd ubiquinol oxidase subunit I [Escherichia coli DH1]