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Sequence Information

Primary Database Link P30958.2
Original Database ID ref NP_415632.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation mfd_ecoli recname: full=transcription-repair-coupling
factor; short=trcf; altnam e:
full=atp-dependent helicase mfd
Sequence Length 1148

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

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Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

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Target Region2-1147
Protein Length1148
Template PDB Code2eyqA
Template Region2-1147
Sequence Identity100%
E-Value0
GA3411
MPQS2.17726
z-DOPE-0.91
TSVMod MethodMTALL
TSVMod RMSD0.278
TSVMod NO351
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2eyqcrystal structure of escherichia coli transcription-repair coupling factor
DBALI2eyqA 
JenaImageLibrary2eyq 
Target Sequence
UniProtKBA0A024L3Y3RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A024L3Y3 
PFAMA0A024L3Y3 
ProdomA0A024L3Y3 
UniProtKBK5H6Y5SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProK5H6Y5 
PFAMK5H6Y5 
ProdomK5H6Y5 
UniProtKBK3IVM5SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProK3IVM5 
PFAMK3IVM5 
ProdomK3IVM5 
UniProtKBB1XA24SubName: Full=Transcription-repair coupling factor;
InterProB1XA24 
PFAMB1XA24 
ProdomB1XA24 
UniProtKBA0A071CGJ0RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A071CGJ0 
PFAMA0A071CGJ0 
ProdomA0A071CGJ0 
UniProtKBI2I5G0SubName: Full=Transcription-repair coupling factor;
InterProI2I5G0 
PFAMI2I5G0 
ProdomI2I5G0 
UniProtKBC4ZS54SubName: Full=Transcription-repair coupling factor;
InterProC4ZS54 
PFAMC4ZS54 
ProdomC4ZS54 
UniProtKBE3PJS7RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProE3PJS7 
PFAME3PJS7 
ProdomE3PJS7 
UniProtKBA0A073GX86RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A073GX86 
PFAMA0A073GX86 
ProdomA0A073GX86 
UniProtKBA0A073TD17RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A073TD17 
PFAMA0A073TD17 
ProdomA0A073TD17 
UniProtKBE9WDG5SubName: Full=Transcription-repair coupling protein;
InterProE9WDG5 
PFAME9WDG5 
ProdomE9WDG5 
UniProtKBN2G2R0SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProN2G2R0 
PFAMN2G2R0 
ProdomN2G2R0 
UniProtKBN2RKQ6SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProN2RKQ6 
PFAMN2RKQ6 
ProdomN2RKQ6 
UniProtKBN4G3U6SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProN4G3U6 
PFAMN4G3U6 
ProdomN4G3U6 
UniProtKBA0A071DX35RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A071DX35 
PFAMA0A071DX35 
ProdomA0A071DX35 
UniProtKBA0A069XMM8RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A069XMM8 
PFAMA0A069XMM8 
ProdomA0A069XMM8 
UniProtKBA0A069YYL0RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A069YYL0 
PFAMA0A069YYL0 
ProdomA0A069YYL0 
UniProtKBW1BX26RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProW1BX26 
PFAMW1BX26 
ProdomW1BX26 
UniProtKBP77592RecName: Full=Transcription-repair-coupling factor;Short=TRCF;EC=3.6.4.-;AltName: Full=ATP-dependent helicase mfd;
InterProP77592 
PFAMP77592 
ProdomP77592 
UniProtKBH4VUN2SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProH4VUN2 
PFAMH4VUN2 
ProdomH4VUN2 
UniProtKBA0A071APG1RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A071APG1 
PFAMA0A071APG1 
ProdomA0A071APG1 
UniProtKBH4W941SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProH4W941 
PFAMH4W941 
ProdomH4W941 
UniProtKBA0A071C0M4RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A071C0M4 
PFAMA0A071C0M4 
ProdomA0A071C0M4 
UniProtKBN4HJF7SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProN4HJF7 
PFAMN4HJF7 
ProdomN4HJF7 
UniProtKBI2Y305SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProI2Y305 
PFAMI2Y305 
ProdomI2Y305 
UniProtKBE9WRP4SubName: Full=Transcription-repair coupling protein;
InterProE9WRP4 
PFAME9WRP4 
ProdomE9WRP4 
UniProtKBA0A080IG77RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A080IG77 
PFAMA0A080IG77 
ProdomA0A080IG77 
UniProtKBP30958RecName: Full=Transcription-repair-coupling factor;Short=TRCF;EC=3.6.4.-;AltName: Full=ATP-dependent helicase mfd;
InterProP30958 
PFAMP30958 
ProdomP30958 
UniProtKBN4EG66SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProN4EG66 
PFAMN4EG66 
ProdomN4EG66 
UniProtKBK3H9I4SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProK3H9I4 
PFAMK3H9I4 
ProdomK3H9I4 
UniProtKBH4UYW6RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProH4UYW6 
PFAMH4UYW6 
ProdomH4UYW6 
UniProtKBA0A079H7V3RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A079H7V3 
PFAMA0A079H7V3 
ProdomA0A079H7V3 
UniProtKBH4VEG6SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProH4VEG6 
PFAMH4VEG6 
ProdomH4VEG6 
UniProtKBN3Q7I5SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProN3Q7I5 
PFAMN3Q7I5 
ProdomN3Q7I5 
UniProtKBM2PSY3SubName: Full=Transcription-repair coupling factor;
InterProM2PSY3 
PFAMM2PSY3 
ProdomM2PSY3 
UniProtKBK5HZU2SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProK5HZU2 
PFAMK5HZU2 
ProdomK5HZU2 
UniProtKBI2YIS5SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProI2YIS5 
PFAMI2YIS5 
ProdomI2YIS5 
UniProtKBH4UHG5RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProH4UHG5 
PFAMH4UHG5 
ProdomH4UHG5 
UniProtKBN4FW14SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProN4FW14 
PFAMN4FW14 
ProdomN4FW14 
UniProtKBG2F4I1SubName: Full=Transcription-repair coupling factor;
InterProG2F4I1 
PFAMG2F4I1 
ProdomG2F4I1 
UniProtKBA0A079FXU5RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A079FXU5 
PFAMA0A079FXU5 
ProdomA0A079FXU5 
UniProtKBF9QYH1SubName: Full=Transcription-repair coupling factor;
InterProF9QYH1 
PFAMF9QYH1 
ProdomF9QYH1 
UniProtKBN2GTE0SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProN2GTE0 
PFAMN2GTE0 
ProdomN2GTE0 
UniProtKBK5BU60RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProK5BU60 
PFAMK5BU60 
ProdomK5BU60 
UniProtKBH0Q9T9SubName: Full=Transcription-repair coupling factor;
InterProH0Q9T9 
PFAMH0Q9T9 
ProdomH0Q9T9 
UniProtKBI0ZQG4SubName: Full=Transcription-repair coupling factor;
InterProI0ZQG4 
PFAMI0ZQG4 
ProdomI0ZQG4 
UniProtKBA0A079FA99RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
InterProA0A079FA99 
PFAMA0A079FA99 
ProdomA0A079FA99 
UniProtKBA0A7D4R6B7Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969}EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969}
InterProA0A7D4R6B7 
PFAMA0A7D4R6B7 
ProdomA0A7D4R6B7 
UniProtKBA0A8A5H7P3SubName: Full=Transcription-repair coupling factor {ECO:0000313|EMBL:QTF24756.1}
InterProA0A8A5H7P3 
PFAMA0A8A5H7P3 
ProdomA0A8A5H7P3 
UniProtKBA0A8F8GW84SubName: Full=Transcription-repair coupling factor {ECO:0000313|EMBL:QXZ35364.1}EC=3.6.1.- {ECO:0000313|EMBL:QXZ35364.1}
InterProA0A8F8GW84 
PFAMA0A8F8GW84 
ProdomA0A8F8GW84 
UniProtKBA0A7Z8BP02SubName: Full=Transcription-repair coupling factor {ECO:0000313|EMBL:TFB47444.1}
InterProA0A7Z8BP02 
PFAMA0A7Z8BP02 
ProdomA0A7Z8BP02 
UniProtKBA0A8A5IB05SubName: Full=Transcription-repair coupling factor {ECO:0000313|EMBL:QTF39320.1}
InterProA0A8A5IB05 
PFAMA0A8A5IB05 
ProdomA0A8A5IB05 
UniProtKBH4VEG6SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProH4VEG6 
PFAMH4VEG6 
ProdomH4VEG6 
UniProtKBH4UYW6SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProH4UYW6 
PFAMH4UYW6 
ProdomH4UYW6 
UniProtKBH4UHG5SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProH4UHG5 
PFAMH4UHG5 
ProdomH4UHG5 
UniProtKBH0Q9T9SubName: Full=Transcription-repair coupling factor;
InterProH0Q9T9 
PFAMH0Q9T9 
ProdomH0Q9T9 
UniProtKBG2F4I1SubName: Full=Transcription-repair coupling factor;
InterProG2F4I1 
PFAMG2F4I1 
ProdomG2F4I1 
UniProtKBE9WDG5SubName: Full=Transcription-repair coupling protein;
InterProE9WDG5 
PFAME9WDG5 
ProdomE9WDG5 
UniProtKBE3PJS7SubName: Full=Transcription-repair coupling factor;
InterProE3PJS7 
PFAME3PJS7 
ProdomE3PJS7 
UniProtKBC4ZS54SubName: Full=Transcription-repair coupling factor;
InterProC4ZS54 
PFAMC4ZS54 
ProdomC4ZS54 
UniProtKBE9WRP4SubName: Full=Transcription-repair coupling protein;
InterProE9WRP4 
PFAME9WRP4 
ProdomE9WRP4 
UniProtKBB1XA24SubName: Full=Transcription-repair coupling factor;
InterProB1XA24 
PFAMB1XA24 
ProdomB1XA24 
UniProtKBH4W941SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProH4W941 
PFAMH4W941 
ProdomH4W941 
UniProtKBA0A9Q5XZV2Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969}EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969}
InterProA0A9Q5XZV2 
PFAMA0A9Q5XZV2 
ProdomA0A9Q5XZV2 
UniProtKBA0A8F9H890SubName: Full=Transcription-repair coupling factor {ECO:0000313|EMBL:QYE24205.1}EC=3.6.1.- {ECO:0000313|EMBL:QYE24205.1}
InterProA0A8F9H890 
PFAMA0A8F9H890 
ProdomA0A8F9H890 
UniProtKBH4VUN2SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProH4VUN2 
PFAMH4VUN2 
ProdomH4VUN2 
UniProtKBA0A7B5I8I8SubName: Full=Transcription-repair coupling factor {ECO:0000313|EMBL:HAJ6402856.1}
InterProA0A7B5I8I8 
PFAMA0A7B5I8I8 
ProdomA0A7B5I8I8 
UniProtKBA0A5Q3TIU7Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969}EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969}
InterProA0A5Q3TIU7 
PFAMA0A5Q3TIU7 
ProdomA0A5Q3TIU7 
UniProtKBI2I5G0SubName: Full=Transcription-repair coupling factor;
InterProI2I5G0 
PFAMI2I5G0 
ProdomI2I5G0 
UniProtKBI2Y305SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProI2Y305 
PFAMI2Y305 
ProdomI2Y305 
UniProtKBI0ZQG4SubName: Full=Transcription-repair coupling factor;
InterProI0ZQG4 
PFAMI0ZQG4 
ProdomI0ZQG4 
UniProtKBF9QYH1SubName: Full=Transcription-repair coupling factor;
InterProF9QYH1 
PFAMF9QYH1 
ProdomF9QYH1 
UniProtKBA0A236LVU8Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969}EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969}
InterProA0A236LVU8 
PFAMA0A236LVU8 
ProdomA0A236LVU8 
UniProtKBI2YIS5SubName: Full=Transcription-repair coupling factor;EC=3.6.1.-;
InterProI2YIS5 
PFAMI2YIS5 
ProdomI2YIS5 
UniProtKBP77592RecName: Full=Transcription-repair-coupling factor {ECO:0000255|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000255|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000255|HAMAP-Rule:MF_00969};
InterProP77592 
PFAMP77592 
ProdomP77592 
UniProtKBP30958.2MFD_ECOLI RecName: Full=Transcription-repair-coupling factor; Short=TRCF; AltName: Full=ATP-dependent helicase mfd
InterProP30958.2 
PFAMP30958.2 
ProdomP30958.2 
UniProtKBP30958RecName: Full=Transcription-repair-coupling factor {ECO:0000255|HAMAP-Rule:MF_00969};Short=TRCF {ECO:0000255|HAMAP-Rule:MF_00969};EC=3.6.4.- {ECO:0000255|HAMAP-Rule:MF_00969};
InterProP30958 
PFAMP30958 
ProdomP30958 
RefSeqZP_05437053.1 transcription-repair coupling factor [Escherichia sp. 4_1_40B]
RefSeqYP_002926164.1 transcription-repair coupling factor [Escherichia coli BW2952]
RefSeqYP_001730085.1 transcription-repair coupling factor [Escherichia coli str. K-12 substr. DH10B]
RefSeqNP_415632.1 transcription-repair coupling factor [Escherichia coli str. K-12 substr. MG1655]
RefSeqZP_07497105.1 transcription-repair coupling factor [Escherichia coli H736]
RefSeqAP_001740.1 transcription-repair coupling factor [Escherichia coli str. K-12 substr. W3110]
PDB6X26ATranscription-repair-coupling factor
PDB6X2FATranscription-repair-coupling factor
PDB6X2NATranscription-repair-coupling factor
PDB6X43ATranscription-repair-coupling factor
PDB6X4WATranscription-repair-coupling factor
PDB6X4YATranscription-repair-coupling factor
PDB6X50ATranscription-repair-coupling factor
GenPept359331767transcription-repair coupling factor
GenPept932859034Transcription-repair coupling factor
GenPept238863683transcription-repair coupling factor
GenPept899730847transcription-repair coupling factor
GenPept899726453transcription-repair coupling factor
GenPept549812617transcription-repair coupling factor
GenPept557271481transcription-repair coupling factor
GenPept7428318G64855 transcription/repair-coupling protein - Escherichia coli
GenPept732684964transcription-repair coupling factor
GenPept731470047transcription-repair coupling factor