University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P33222
Original Database ID ref NP_418607.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation recname: full=putative acid--amine
ligase yjfc;ec=6.3.1.-;
Sequence Length 387

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-383
Protein Length387
Template PDB Code2io7A
Template Region215-614
Sequence Identity24%
E-Value0
GA3411
MPQS1.27226
z-DOPE-0.36
TSVMod MethodMSALL
TSVMod RMSD4.388
TSVMod NO350.762
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2io7e. coli bifunctional glutathionylspermidine synthetase/amidase incomplex with mg2+ and amppnp
DBALI2io7A 
JenaImageLibrary2io7 
Target Sequence
UniProtKBC9QTN9SubName: Full=Glutathionylspermidine synthase;SubName: Full=Putative synthetase/amidase;
InterProC9QTN9 
PFAMC9QTN9 
ProdomC9QTN9 
UniProtKBF9QY30SubName: Full=Putative synthetase/amidase;
InterProF9QY30 
PFAMF9QY30 
ProdomF9QY30 
UniProtKBG2F283SubName: Full=Putative synthetase/amidase;
InterProG2F283 
PFAMG2F283 
ProdomG2F283 
UniProtKBC4ZR63SubName: Full=Predicted synthetase/amidase;
InterProC4ZR63 
PFAMC4ZR63 
ProdomC4ZR63 
UniProtKBH0QG47SubName: Full=Predicted synthetase/amidase;
InterProH0QG47 
PFAMH0QG47 
ProdomH0QG47 
UniProtKBM2N2K2SubName: Full=Putative synthetase/amidase;
InterProM2N2K2 
PFAMM2N2K2 
ProdomM2N2K2 
UniProtKBA0A0G3HSR1SubName: Full=Glutathionylspermidine synthase-like protein {ECO:0000313|EMBL:AKK14152.1};
InterProA0A0G3HSR1 
PFAMA0A0G3HSR1 
ProdomA0A0G3HSR1 
UniProtKBB1XDT7SubName: Full=Predicted synthetase/amidase;
InterProB1XDT7 
PFAMB1XDT7 
ProdomB1XDT7 
UniProtKBP33222RecName: Full=Uncharacterized protein YjfC;
InterProP33222 
PFAMP33222 
ProdomP33222 
UniProtKBA0A094XX70SubName: Full=Glutathionylspermidine synthase family protein;SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKO55329.1};
InterProA0A094XX70 
PFAMA0A094XX70 
ProdomA0A094XX70 
UniProtKBT9S4G1SubName: Full=Synthetase/amidase {ECO:0000313|EMBL:EQZ94106.1};
InterProT9S4G1 
PFAMT9S4G1 
ProdomT9S4G1 
UniProtKBQ2M6B9RecName: Full=Uncharacterized protein YjfC;
InterProQ2M6B9 
PFAMQ2M6B9 
ProdomQ2M6B9 
UniProtKBA0A5Q3TGM2GSP_synth domain-containing protein {ECO:0000259|Pfam:PF03738}
InterProA0A5Q3TGM2 
PFAMA0A5Q3TGM2 
ProdomA0A5Q3TGM2 
UniProtKBA0A385FW71SubName: Full=Acid--amine ligase YjfC {ECO:0000313|EMBL:AXV45783.1}EC=6.3.1.- {ECO:0000313|EMBL:AXV45783.1}
InterProA0A385FW71 
PFAMA0A385FW71 
ProdomA0A385FW71 
UniProtKBC4ZR63SubName: Full=Predicted synthetase/amidase;
InterProC4ZR63 
PFAMC4ZR63 
ProdomC4ZR63 
UniProtKBC9QTN9SubName: Full=Glutathionylspermidine synthase;SubName: Full=Putative synthetase/amidase;
InterProC9QTN9 
PFAMC9QTN9 
ProdomC9QTN9 
UniProtKBB1XDT7SubName: Full=Predicted synthetase/amidase;
InterProB1XDT7 
PFAMB1XDT7 
ProdomB1XDT7 
UniProtKBA0A1M2TIK8SubName: Full=Glutathionylspermidine synthase YjfC {ECO:0000313|EMBL:VTQ24121.1}SubName: Full=Glutathionylspermidine synthase family protein {ECO:0000313|EMBL:KAB3517706.1}SubName: Full=Glutathionylsp
InterProA0A1M2TIK8 
PFAMA0A1M2TIK8 
ProdomA0A1M2TIK8 
UniProtKBF9QY30SubName: Full=Putative synthetase/amidase;
InterProF9QY30 
PFAMF9QY30 
ProdomF9QY30 
UniProtKBG2F283SubName: Full=Putative synthetase/amidase;
InterProG2F283 
PFAMG2F283 
ProdomG2F283 
UniProtKBH0QG47SubName: Full=Predicted synthetase/amidase;
InterProH0QG47 
PFAMH0QG47 
ProdomH0QG47 
UniProtKBA0A8F9HAE1SubName: Full=Glutathionylspermidine synthase family protein {ECO:0000313|EMBL:QYE25313.1}
InterProA0A8F9HAE1 
PFAMA0A8F9HAE1 
ProdomA0A8F9HAE1 
UniProtKBQ2M6B9Predicted synthetase/amidase
InterProQ2M6B9 
PFAMQ2M6B9 
ProdomQ2M6B9 
UniProtKBA0A8F8DK46SubName: Full=Glutathionylspermidine synthase family protein {ECO:0000313|EMBL:QXZ36532.1}
InterProA0A8F8DK46 
PFAMA0A8F8DK46 
ProdomA0A8F8DK46 
UniProtKBP33222RecName: Full=Putative acid--amine ligase YjfC;EC=6.3.1.-;
InterProP33222 
PFAMP33222 
ProdomP33222 
UniProtKBP33222.2YJFC_ECOLI RecName: Full=Uncharacterized protein yjfC
InterProP33222.2 
PFAMP33222.2 
ProdomP33222.2 
UniProtKBQ2M6B9RecName: Full=Putative acid--amine ligase YjfC;EC=6.3.1.-;
InterProQ2M6B9 
PFAMQ2M6B9 
ProdomQ2M6B9 
RefSeqYP_001732952.1 synthetase/amidase [Escherichia coli str. K-12 substr. DH10B]
RefSeqAP_004686.1 predicted synthetase/amidase [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_002929089.1 putative synthetase/amidase [Escherichia coli BW2952]
RefSeqNP_418607.1 glutathionylspermidine synthase homolog [Escherichia coli str. K-12 substr. MG1655]
GenPept899729385hypothetical protein ADZ27_21585
GenPept899733897hypothetical protein ADZ28_21590
GenPept932857713Similarity with glutathionylspermidine synthase, group 1
GenPept817581462ATP-Grasp family ATPase
GenPept359334293predicted synthetase/amidase
GenPept899725033hypothetical protein ADS71_21590
GenPept89110906 predicted synthetase/amidase [Escherichia coli str. K-12 substr. W3110]
GenPept85676937predicted synthetase/amidase
GenPept557274345putative synthetase/amidase
GenPept664686485hypothetical protein HQ24_21545
GenPept682121547ATP-Grasp family ATPase
GenPept687674946predicted synthetase/amidase
GenPept687679254predicted synthetase/amidase
GenPept730585398glutathionylspermidine synthase homolog
GenPept731473126glutathionylspermidine synthase homolog
GenPept732013YJFC_ECOLI RecName: Full=Uncharacterized protein yjfC
GenPept549815479glutathionylspermidine synthase-like protein
GenPept5370271st aidB orf of GenBank Accession Number L20915; alternate gene name yjfC
GenPept16132008 glutathionylspermidine synthase homolog [Escherichia coli str. K-12 substr. MG1655]
GenPept169891467predicted synthetase/amidase
GenPept170083632 synthetase/amidase [Escherichia coli str. K-12 substr. DH10B]
GenPept1790629ATP-Grasp family ATPase
GenPept238863128predicted synthetase/amidase
GenPept238903293 putative synthetase/amidase [Escherichia coli BW2952]
GenPept260450987glutathionylspermidine synthase
GenPept315138740putative synthetase/amidase
GenPept732686243hypothetical protein EO53_19515
GenPept808698581hypothetical protein SH05_02525
GenPept808728798hypothetical protein SH07_02530
GenPept808733155hypothetical protein SF31_02515
GenPept817577321ATP-Grasp family ATPase
GenPept817585602ATP-Grasp family ATPase
GenPept817589743ATP-Grasp family ATPase
GenPept817593882ATP-Grasp family ATPase
GenPept827618169glutathionylspermidine synthase-like protein
GenPept827620508glutathionylspermidine synthase-like protein
GenPept808720475hypothetical protein SH04_02525
GenPept808716051hypothetical protein SH06_02515
GenPept808702962hypothetical protein SH02_02525
GenPept808707332hypothetical protein SH08_02530
GenPept808711693hypothetical protein SH03_02530
GenPept1361263S56411 hypothetical 45K protein (vacB-aidB intergenic region) - Escherichia coli
GenBankACR65126.1 predicted synthetase/amidase [Escherichia coli BW2952]
GenBankACB05174.1 predicted synthetase/amidase [Escherichia coli str. K-12 substr. DH10B]
GenBankAAC77143.1 glutathionylspermidine synthase homolog [Escherichia coli str. K-12 substr. MG1655]
GenBankAAA97082.1 1st aidB orf of GenBank Accession Number L20915; alternate gene name yjfC [Escherichia coli str. K-12 substr. MG1655]
GenBankACX41409.1 glutathionylspermidine synthase [Escherichia coli DH1]