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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link A0A025CFI9
Original Database ID ref NP_416640.2
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation subname: full=membrane protein
{eco:0000313|embl:eyv14173.1};
Sequence Length 192

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region91-153
Protein Length192
Template PDB Code4l07A
Template Region21-83
Sequence Identity35%
E-Value0.23
GA3410.46
MPQS0.488925
z-DOPE1.67
TSVMod MethodMSALL
TSVMod RMSD10.909
TSVMod NO350.087
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Sequence Model Coverage Summary
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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB4l07
DBALI4l07A 
JenaImageLibrary4l07 
Target Sequence
UniProtKBG5YIP6SubName: Full=Inner membrane protein yohD;
InterProG5YIP6 
PFAMG5YIP6 
ProdomG5YIP6 
UniProtKBA0A070TBA4SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDX27226.1};
InterProA0A070TBA4 
PFAMA0A070TBA4 
ProdomA0A070TBA4 
UniProtKBA0A070USF4SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDX45206.1};
InterProA0A070USF4 
PFAMA0A070USF4 
ProdomA0A070USF4 
UniProtKBA0A071CLV4SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDZ19431.1};
InterProA0A071CLV4 
PFAMA0A071CLV4 
ProdomA0A071CLV4 
UniProtKBA0A071DKH4SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDZ41648.1};
InterProA0A071DKH4 
PFAMA0A071DKH4 
ProdomA0A071DKH4 
UniProtKBA0A073U0Q8SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KEL28815.1};
InterProA0A073U0Q8 
PFAMA0A073U0Q8 
ProdomA0A073U0Q8 
UniProtKBA0A074HS00SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KEN97230.1};
InterProA0A074HS00 
PFAMA0A074HS00 
ProdomA0A074HS00 
UniProtKBA0A079H3R5SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDY99240.1};
InterProA0A079H3R5 
PFAMA0A079H3R5 
ProdomA0A079H3R5 
UniProtKBA0A080GKF1SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KEN89745.1};
InterProA0A080GKF1 
PFAMA0A080GKF1 
ProdomA0A080GKF1 
UniProtKBA0A0E0U073SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE57248.1};
InterProA0A0E0U073 
PFAMA0A0E0U073 
ProdomA0A0E0U073 
UniProtKBA0A0E0V847SubName: Full=Inner membrane protein, DedA family {ECO:0000313|EMBL:AEQ13275.1};
InterProA0A0E0V847 
PFAMA0A0E0V847 
ProdomA0A0E0V847 
UniProtKBA0A070FPZ1SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV64569.1};
InterProA0A070FPZ1 
PFAMA0A070FPZ1 
ProdomA0A070FPZ1 
UniProtKBA0A070CQU0SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV30467.1};
InterProA0A070CQU0 
PFAMA0A070CQU0 
ProdomA0A070CQU0 
UniProtKBB6I8I7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAG77928.1};
InterProB6I8I7 
PFAMB6I8I7 
ProdomB6I8I7 
UniProtKBG5X9L9SubName: Full=Inner membrane protein yohD;
InterProG5X9L9 
PFAMG5X9L9 
ProdomG5X9L9 
UniProtKBH4V348SubName: Full=Conserved inner membrane protein {ECO:0000313|EMBL:EHV55355.1};
InterProH4V348 
PFAMH4V348 
ProdomH4V348 
UniProtKBH4VJB4SubName: Full=Inner membrane protein yohD;
InterProH4VJB4 
PFAMH4VJB4 
ProdomH4VJB4 
UniProtKBH4WSY8SubName: Full=Inner membrane protein yohD;
InterProH4WSY8 
PFAMH4WSY8 
ProdomH4WSY8 
UniProtKBB1X7M5SubName: Full=Conserved inner membrane protein;
InterProB1X7M5 
PFAMB1X7M5 
ProdomB1X7M5 
UniProtKBB2TVV8SubName: Full=Putative membrane protein {ECO:0000313|EMBL:ACD07745.1};
InterProB2TVV8 
PFAMB2TVV8 
ProdomB2TVV8 
UniProtKBH4YHW9SubName: Full=Inner membrane protein yohD;
InterProH4YHW9 
PFAMH4YHW9 
ProdomH4YHW9 
UniProtKBB3IPB1SubName: Full=Putative membrane protein;
InterProB3IPB1 
PFAMB3IPB1 
ProdomB3IPB1 
UniProtKBH4Y3C2SubName: Full=Conserved inner membrane protein;
InterProH4Y3C2 
PFAMH4Y3C2 
ProdomH4Y3C2 
UniProtKBG0FC55SubName: Full=SNARE associated Golgi family protein-like protein {ECO:0000313|EMBL:AEJ57275.1};
InterProG0FC55 
PFAMG0FC55 
ProdomG0FC55 
UniProtKBA0A0E3H3D3SubName: Full=Inner membrane protein YohD {ECO:0000313|EMBL:AKA91216.1};
InterProA0A0E3H3D3 
PFAMA0A0E3H3D3 
ProdomA0A0E3H3D3 
UniProtKBA0A0G2X754SubName: Full=Membrane protein {ECO:0000313|EMBL:AKI65995.1};
InterProA0A0G2X754 
PFAMA0A0G2X754 
ProdomA0A0G2X754 
UniProtKBF9CI61SubName: Full=Inner membrane protein;
InterProF9CI61 
PFAMF9CI61 
ProdomF9CI61 
UniProtKBE9Y0V2SubName: Full=Putative uncharacterized protein;
InterProE9Y0V2 
PFAME9Y0V2 
ProdomE9Y0V2 
UniProtKBE7SFP1SubName: Full=DedA family inner membrane protein YohD {ECO:0000313|EMBL:EFW51668.1};
InterProE7SFP1 
PFAME7SFP1 
ProdomE7SFP1 
UniProtKBB7NPH6SubName: Full=Uncharacterized protein;
InterProB7NPH6 
PFAMB7NPH6 
ProdomB7NPH6 
UniProtKBG2D0V1SubName: Full=Putative uncharacterized protein;
InterProG2D0V1 
PFAMG2D0V1 
ProdomG2D0V1 
UniProtKBG2AWP4SubName: Full=Putative uncharacterized protein;
InterProG2AWP4 
PFAMG2AWP4 
ProdomG2AWP4 
UniProtKBG5VC44SubName: Full=Inner membrane protein yohD;
InterProG5VC44 
PFAMG5VC44 
ProdomG5VC44 
UniProtKBG5UTQ6SubName: Full=Inner membrane protein yohD;
InterProG5UTQ6 
PFAMG5UTQ6 
ProdomG5UTQ6 
UniProtKBG5W852SubName: Full=Inner membrane protein yohD;
InterProG5W852 
PFAMG5W852 
ProdomG5W852 
UniProtKBG5XYT2SubName: Full=Inner membrane protein yohD;
InterProG5XYT2 
PFAMG5XYT2 
ProdomG5XYT2 
UniProtKBE9YBS1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGB68077.1};
InterProE9YBS1 
PFAME9YBS1 
ProdomE9YBS1 
UniProtKBF3VUZ7SubName: Full=Putative uncharacterized protein;
InterProF3VUZ7 
PFAMF3VUZ7 
ProdomF3VUZ7 
UniProtKBE7TEF0SubName: Full=DedA family inner membrane protein YohD {ECO:0000313|EMBL:EFW59639.1};
InterProE7TEF0 
PFAME7TEF0 
ProdomE7TEF0 
UniProtKBA0A0H3MEV2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CAR16997.1};
InterProA0A0H3MEV2 
PFAMA0A0H3MEV2 
ProdomA0A0H3MEV2 
UniProtKBA0A0H4RXG4SubName: Full=Inner membrane protein, DedA family {ECO:0000313|EMBL:AKP84894.1};
InterProA0A0H4RXG4 
PFAMA0A0H4RXG4 
ProdomA0A0H4RXG4 
UniProtKBC6EAH5SubName: Full=SNARE associated Golgi protein {ECO:0000313|EMBL:ACT28582.1};
InterProC6EAH5 
PFAMC6EAH5 
ProdomC6EAH5 
UniProtKBE3PCS7SubName: Full=Putative membrane protein {ECO:0000313|EMBL:CBJ01776.1};
InterProE3PCS7 
PFAME3PCS7 
ProdomE3PCS7 
UniProtKBE0IYG0SubName: Full=Conserved inner membrane protein {ECO:0000313|EMBL:ADT75774.1};SubName: Full=Inner membrane protein {ECO:0000313|EMBL:AFH11946.1};
InterProE0IYG0 
PFAME0IYG0 
ProdomE0IYG0 
UniProtKBE7J6A8SubName: Full=Putative uncharacterized protein;
InterProE7J6A8 
PFAME7J6A8 
ProdomE7J6A8 
UniProtKBD8BXI6SubName: Full=SNARE-like domain protein {ECO:0000313|EMBL:EFI88683.1};
InterProD8BXI6 
PFAMD8BXI6 
ProdomD8BXI6 
UniProtKBC5W6N2SubName: Full=SNARE associated Golgi protein {ECO:0000313|EMBL:ACT28582.1};
InterProC5W6N2 
PFAMC5W6N2 
ProdomC5W6N2 
UniProtKBE9W483SubName: Full=Putative uncharacterized protein;
InterProE9W483 
PFAME9W483 
ProdomE9W483 
UniProtKBE7ULD2SubName: Full=DedA family inner membrane protein YohD;
InterProE7ULD2 
PFAME7ULD2 
ProdomE7ULD2 
UniProtKBG5XEX5SubName: Full=Inner membrane protein yohD;
InterProG5XEX5 
PFAMG5XEX5 
ProdomG5XEX5 
UniProtKBH0QAK3SubName: Full=Conserved inner membrane protein;
InterProH0QAK3 
PFAMH0QAK3 
ProdomH0QAK3 
UniProtKBA0A025CFI9SubName: Full=Membrane protein {ECO:0000313|EMBL:EYV14173.1};
InterProA0A025CFI9 
PFAMA0A025CFI9 
ProdomA0A025CFI9 
UniProtKBB3H8Y9SubName: Full=Inner membrane protein, DedA family {ECO:0000313|EMBL:AIF64783.1};
InterProB3H8Y9 
PFAMB3H8Y9 
ProdomB3H8Y9 
UniProtKBA0A069Z8B7SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDU55888.1};
InterProA0A069Z8B7 
PFAMA0A069Z8B7 
ProdomA0A069Z8B7 
UniProtKBA0A070YCN2SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDX89417.1};
InterProA0A070YCN2 
PFAMA0A070YCN2 
ProdomA0A070YCN2 
UniProtKBA0A079FKL5SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDY55480.1};
InterProA0A079FKL5 
PFAMA0A079FKL5 
ProdomA0A079FKL5 
UniProtKBA0A0E0XYK6SubName: Full=Inner membrane protein {ECO:0000313|EMBL:AFS73657.1};
InterProA0A0E0XYK6 
PFAMA0A0E0XYK6 
ProdomA0A0E0XYK6 
UniProtKBD6HYP6SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:EFE62745.2};
InterProD6HYP6 
PFAMD6HYP6 
ProdomD6HYP6 
UniProtKBE7JVM5SubName: Full=Putative uncharacterized protein;
InterProE7JVM5 
PFAME7JVM5 
ProdomE7JVM5 
UniProtKBE9XBV7SubName: Full=Putative uncharacterized protein;
InterProE9XBV7 
PFAME9XBV7 
ProdomE9XBV7 
UniProtKBF9HRB8SubName: Full=Inner membrane protein yohD;SubName: Full=Uncharacterized protein;
InterProF9HRB8 
PFAMF9HRB8 
ProdomF9HRB8 
UniProtKBG5U003SubName: Full=Inner membrane protein yohD;
InterProG5U003 
PFAMG5U003 
ProdomG5U003 
UniProtKBH4XMH5SubName: Full=Conserved inner membrane protein;
InterProH4XMH5 
PFAMH4XMH5 
ProdomH4XMH5 
UniProtKBF9QY80SubName: Full=Inner membrane protein;
InterProF9QY80 
PFAMF9QY80 
ProdomF9QY80 
UniProtKBG5TKX9SubName: Full=Inner membrane protein yohD;
InterProG5TKX9 
PFAMG5TKX9 
ProdomG5TKX9 
UniProtKBA0A028C192SubName: Full=Membrane protein {ECO:0000313|EMBL:EZE29200.1};
InterProA0A028C192 
PFAMA0A028C192 
ProdomA0A028C192 
UniProtKBG2F3Z9SubName: Full=Inner membrane protein;
InterProG2F3Z9 
PFAMG2F3Z9 
ProdomG2F3Z9 
UniProtKBA0A029PJQ3SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:EZK22155.1};
InterProA0A029PJQ3 
PFAMA0A029PJQ3 
ProdomA0A029PJQ3 
UniProtKBA0A0I1SGU0SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:CSR75751.1};
InterProA0A0I1SGU0 
PFAMA0A0I1SGU0 
ProdomA0A0I1SGU0 
UniProtKBG2CMB4SubName: Full=Putative uncharacterized protein;
InterProG2CMB4 
PFAMG2CMB4 
ProdomG2CMB4 
UniProtKBB7LA03SubName: Full=YohD protein {ECO:0000313|EMBL:CAU98257.1};
InterProB7LA03 
PFAMB7LA03 
ProdomB7LA03 
UniProtKBA0A069XTC1SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDU33143.1};
InterProA0A069XTC1 
PFAMA0A069XTC1 
ProdomA0A069XTC1 
UniProtKBA0A074IJ25SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KEO10149.1};
InterProA0A074IJ25 
PFAMA0A074IJ25 
ProdomA0A074IJ25 
UniProtKBC9QRT3SubName: Full=Conserved inner membrane protein;SubName: Full=SNARE associated Golgi protein-like protein;
InterProC9QRT3 
PFAMC9QRT3 
ProdomC9QRT3 
UniProtKBE9WWG2SubName: Full=Putative uncharacterized protein;
InterProE9WWG2 
PFAME9WWG2 
ProdomE9WWG2 
UniProtKBG5UA46SubName: Full=Inner membrane protein yohD;
InterProG5UA46 
PFAMG5UA46 
ProdomG5UA46 
UniProtKBH4UL99SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:EHV57471.1};
InterProH4UL99 
PFAMH4UL99 
ProdomH4UL99 
UniProtKBC6UKW2SubName: Full=Conserved inner membrane protein;
InterProC6UKW2 
PFAMC6UKW2 
ProdomC6UKW2 
UniProtKBE6B9D8SubName: Full=Putative membrane protein {ECO:0000313|EMBL:EFU96006.1};
InterProE6B9D8 
PFAME6B9D8 
ProdomE6B9D8 
UniProtKBE7ICX1SubName: Full=Putative uncharacterized protein;
InterProE7ICX1 
PFAME7ICX1 
ProdomE7ICX1 
UniProtKBE8Y1U6SubName: Full=SNARE associated Golgi protein-like protein {ECO:0000313|EMBL:ADX50240.1};
InterProE8Y1U6 
PFAME8Y1U6 
ProdomE8Y1U6 
UniProtKBE9WGI1SubName: Full=Putative uncharacterized protein;
InterProE9WGI1 
PFAME9WGI1 
ProdomE9WGI1 
UniProtKBF4M207SubName: Full=Putative uncharacterized protein;
InterProF4M207 
PFAMF4M207 
ProdomF4M207 
UniProtKBF8YHN3SubName: Full=Inner membrane protein;
InterProF8YHN3 
PFAMF8YHN3 
ProdomF8YHN3 
UniProtKBC4ZSL8SubName: Full=Conserved inner membrane protein;
InterProC4ZSL8 
PFAMC4ZSL8 
ProdomC4ZSL8 
UniProtKBG4PRW4SubName: Full=Inner membrane protein, DedA family;
InterProG4PRW4 
PFAMG4PRW4 
ProdomG4PRW4 
UniProtKBG5VR88SubName: Full=Inner membrane protein yohD;
InterProG5VR88 
PFAMG5VR88 
ProdomG5VR88 
UniProtKBA0A0G3HXT6SubName: Full=Inner membrane protein, DedA family protein {ECO:0000313|EMBL:AKK18109.1};
InterProA0A0G3HXT6 
PFAMA0A0G3HXT6 
ProdomA0A0G3HXT6 
UniProtKBA0A0E2TWZ4SubName: Full=Membrane protein {ECO:0000313|EMBL:EYV13427.1};
InterProA0A0E2TWZ4 
PFAMA0A0E2TWZ4 
ProdomA0A0E2TWZ4 
UniProtKBA0A080HZK2SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KEO23249.1};
InterProA0A080HZK2 
PFAMA0A080HZK2 
ProdomA0A080HZK2 
UniProtKBG5WVE2SubName: Full=Inner membrane protein yohD;
InterProG5WVE2 
PFAMG5WVE2 
ProdomG5WVE2 
UniProtKBB1LN33SubName: Full=Putative membrane protein {ECO:0000313|EMBL:ACB18663.1};
InterProB1LN33 
PFAMB1LN33 
ProdomB1LN33 
UniProtKBH4ZYM1SubName: Full=Conserved inner membrane protein {ECO:0000313|EMBL:EHW16364.1};
InterProH4ZYM1 
PFAMH4ZYM1 
ProdomH4ZYM1 
UniProtKBB3X983SubName: Full=Putative membrane protein;
InterProB3X983 
PFAMB3X983 
ProdomB3X983 
UniProtKBA0A070CQC6SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV31078.1};
InterProA0A070CQC6 
PFAMA0A070CQC6 
ProdomA0A070CQC6 
UniProtKBA0A070SYB4SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDX21729.1};
InterProA0A070SYB4 
PFAMA0A070SYB4 
ProdomA0A070SYB4 
UniProtKBA0A071AT08SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDY58268.1};
InterProA0A071AT08 
PFAMA0A071AT08 
ProdomA0A071AT08 
UniProtKBA0A073GRZ4SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KEJ67686.1};
InterProA0A073GRZ4 
PFAMA0A073GRZ4 
ProdomA0A073GRZ4 
UniProtKBA0A079FQH4SubName: Full=Inner membrane protein yohD {ECO:0000313|EMBL:KDY59325.1};
InterProA0A079FQH4 
PFAMA0A079FQH4 
ProdomA0A079FQH4 
UniProtKBG1YBD8SubName: Full=Putative uncharacterized protein;
InterProG1YBD8 
PFAMG1YBD8 
ProdomG1YBD8