University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P33647.1
Original Database ID ref NP_418646.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation chpb_ecoli recname: full=pemk-like
protein 2
Sequence Length 116

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region7-115
Protein Length116
Template PDB Code1m1fA
Template Region1-109
Sequence Identity38%
E-Value0
GA3411
MPQS1.41096
z-DOPE-0.23
TSVMod MethodMTALL
TSVMod RMSD2.535
TSVMod NO350.815
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1m1fkid toxin protein from e.coli plasmid r1 ; PFAM: PF02452 ; SCOP: 78401
DBALI1m1fA 
CATH2.30.30.110 Domain: 1m1fA00 SH3 type barrels. (99%)
JenaImageLibrary1m1f 
Target Sequence
UniProtKBQ328B3SubName: Full=Probable growth inhibitor, PemK-like, autoregulated {ECO:0000313|EMBL:ABB64342.1};
InterProQ328B3 
PFAMQ328B3 
ProdomQ328B3 
UniProtKBB1XDX4SubName: Full=Toxin of the ChpB-ChpS toxin-antitoxin system;
InterProB1XDX4 
PFAMB1XDX4 
ProdomB1XDX4 
UniProtKBM2NVS9SubName: Full=Toxin ChpB;
InterProM2NVS9 
PFAMM2NVS9 
ProdomM2NVS9 
UniProtKBH0QG86SubName: Full=Toxin of the ChpB-ChpS toxin-antitoxin system;
InterProH0QG86 
PFAMH0QG86 
ProdomH0QG86 
UniProtKBE2XEA9SubName: Full=MazF protein {ECO:0000313|EMBL:AHA68679.1};SubName: Full=PemK-like protein 2 {ECO:0000313|EMBL:EFP69878.1};
InterProE2XEA9 
PFAME2XEA9 
ProdomE2XEA9 
UniProtKBG2F2C3SubName: Full=Toxin ChpB;
InterProG2F2C3 
PFAMG2F2C3 
ProdomG2F2C3 
UniProtKBF9QXZ0SubName: Full=Toxin ChpB;
InterProF9QXZ0 
PFAMF9QXZ0 
ProdomF9QXZ0 
UniProtKBC4ZRA0SubName: Full=Toxin of the ChpB-ChpS toxin-antitoxin system;
InterProC4ZRA0 
PFAMC4ZRA0 
ProdomC4ZRA0 
UniProtKBP33647RecName: Full=mRNA interferase ChpB;EC=3.1.-.-;AltName: Full=Endoribonuclease ChpB;AltName: Full=Toxin ChpB;
InterProP33647 
PFAMP33647 
ProdomP33647 
UniProtKBE6NV65SubName: Full=Toxin ChpB;
InterProE6NV65 
PFAME6NV65 
ProdomE6NV65 
UniProtKBU9XNP6SubName: Full=PemK-like protein 2 {ECO:0000313|EMBL:ESA63679.1};
InterProU9XNP6 
PFAMU9XNP6 
ProdomU9XNP6 
UniProtKBA0A029LNH6SubName: Full=mRNA interferase ChpB {ECO:0000313|EMBL:EZJ86929.1};EC=3.1.-.- {ECO:0000313|EMBL:EZJ86929.1};
InterProA0A029LNH6 
PFAMA0A029LNH6 
ProdomA0A029LNH6 
UniProtKBA0A029JYW8SubName: Full=mRNA interferase ChpB {ECO:0000313|EMBL:EZJ65642.1};EC=3.1.-.- {ECO:0000313|EMBL:EZJ65642.1};
InterProA0A029JYW8 
PFAMA0A029JYW8 
ProdomA0A029JYW8 
UniProtKBQ2M680RecName: Full=mRNA interferase ChpB;EC=3.1.-.-;AltName: Full=Endoribonuclease ChpB;AltName: Full=Toxin ChpB;
InterProQ2M680 
PFAMQ2M680 
ProdomQ2M680 
UniProtKBA0A090H4V3SubName: Full=Toxin ChpB {ECO:0000313|EMBL:AKO55368.1};SubName: Full=mRNA interferase ChpB;EC=3.1.-.-;
InterProA0A090H4V3 
PFAMA0A090H4V3 
ProdomA0A090H4V3 
UniProtKBF4TNH6SubName: Full=Toxin-antitoxin system, toxin component, MazF family {ECO:0000313|EMBL:EGI18504.1};
InterProF4TNH6 
PFAMF4TNH6 
ProdomF4TNH6 
UniProtKBA0A090NX63SubName: Full=MazF protein {ECO:0000313|EMBL:ESU78963.1};
InterProA0A090NX63 
PFAMA0A090NX63 
ProdomA0A090NX63 
UniProtKBE2XEA9SubName: Full=PemK-like protein 2;
InterProE2XEA9 
PFAME2XEA9 
ProdomE2XEA9 
UniProtKBH0QG86SubName: Full=Toxin of the ChpB-ChpS toxin-antitoxin system;
InterProH0QG86 
PFAMH0QG86 
ProdomH0QG86 
UniProtKBC4ZRA0SubName: Full=Toxin of the ChpB-ChpS toxin-antitoxin system;
InterProC4ZRA0 
PFAMC4ZRA0 
ProdomC4ZRA0 
UniProtKBA0A7U8SIJ6SubName: Full=Endoribonuclease toxin ChpB {ECO:0000313|EMBL:EFB5452268.1}
InterProA0A7U8SIJ6 
PFAMA0A7U8SIJ6 
ProdomA0A7U8SIJ6 
UniProtKBA0A5Q3TH25SubName: Full=Endoribonuclease toxin ChpB {ECO:0000313|EMBL:QGL43365.1}
InterProA0A5Q3TH25 
PFAMA0A5Q3TH25 
ProdomA0A5Q3TH25 
UniProtKBA0A7U8QVZ9SubName: Full=Endoribonuclease toxin ChpB {ECO:0000313|EMBL:EFA4300387.1}EC=4.6.1.22 {ECO:0000313|EMBL:EFA4300387.1}
InterProA0A7U8QVZ9 
PFAMA0A7U8QVZ9 
ProdomA0A7U8QVZ9 
UniProtKBA0A8F9HAA0SubName: Full=Endoribonuclease toxin ChpB {ECO:0000313|EMBL:QYE25278.1}EC=4.6.1.22 {ECO:0000313|EMBL:QYE25278.1}
InterProA0A8F9HAA0 
PFAMA0A8F9HAA0 
ProdomA0A8F9HAA0 
UniProtKBA0A8F8DEV7SubName: Full=Endoribonuclease toxin ChpB {ECO:0000313|EMBL:QXZ36498.1}EC=4.6.1.22 {ECO:0000313|EMBL:QXZ36498.1}
InterProA0A8F8DEV7 
PFAMA0A8F8DEV7 
ProdomA0A8F8DEV7 
UniProtKBB1XDX4SubName: Full=Toxin of the ChpB-ChpS toxin-antitoxin system;
InterProB1XDX4 
PFAMB1XDX4 
ProdomB1XDX4 
UniProtKBE6NV65SubName: Full=Toxin ChpB;
InterProE6NV65 
PFAME6NV65 
ProdomE6NV65 
UniProtKBQ2M680Toxin of the ChpB-ChpS toxin-antitoxin system
InterProQ2M680 
PFAMQ2M680 
ProdomQ2M680 
UniProtKBF4TNH6SubName: Full=Toxin-antitoxin system, toxin component, MazF family;
InterProF4TNH6 
PFAMF4TNH6 
ProdomF4TNH6 
UniProtKBQ328B3SubName: Full=Probable growth inhibitor, PemK-like, autoregulated;
InterProQ328B3 
PFAMQ328B3 
ProdomQ328B3 
UniProtKBG2F2C3SubName: Full=Toxin ChpB;
InterProG2F2C3 
PFAMG2F2C3 
ProdomG2F2C3 
UniProtKBF9QXZ0SubName: Full=Toxin ChpB;
InterProF9QXZ0 
PFAMF9QXZ0 
ProdomF9QXZ0 
UniProtKBA0A1E2VN99SubName: Full=Toxin ChpB {ECO:0000313|EMBL:ODG82026.1}
InterProA0A1E2VN99 
PFAMA0A1E2VN99 
ProdomA0A1E2VN99 
UniProtKBP33647RecName: Full=Endoribonuclease ChpB;EC=3.1.-.-;AltName: Full=Toxin ChpB;AltName: Full=mRNA interferase ChpB;
InterProP33647 
PFAMP33647 
ProdomP33647 
UniProtKBP33647.1CHPB_ECOLI RecName: Full=PemK-like protein 2
InterProP33647.1 
PFAMP33647.1 
ProdomP33647.1 
UniProtKBQ2M680RecName: Full=Endoribonuclease ChpB;EC=3.1.-.-;AltName: Full=Toxin ChpB;AltName: Full=mRNA interferase ChpB;
InterProQ2M680 
PFAMQ2M680 
ProdomQ2M680 
RefSeqYP_405833.1 toxin ChpB [Shigella dysenteriae Sd197]
RefSeqYP_001732989.1 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str. K-12 substr. DH10B]
RefSeqYP_002929126.1 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli BW2952]
RefSeqZP_07510800.1 toxin ChpB [Escherichia coli M718]
RefSeqAP_004725.1 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str. K-12 substr. W3110]
RefSeqNP_418646.1 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str. K-12 substr. MG1655]
GenPept464358CHPB_ECOLI RecName: Full=PemK-like protein 2
GenPept817581499toxin of the ChpB-ChpS toxin-antitoxin system
GenPept932857752Programmed cell death toxin ChpB
GenPept899733929toxin ChpB
GenPept16132047 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str. K-12 substr. MG1655]
GenPept538735D49339 cell growth regulatory protein ChpBK - Escherichia coli
GenPept549815514toxin of the ChpB-ChpS toxin-antitoxin system
GenPept557274382toxin ChpB
GenPept558576541MazF protein
GenPept664686522toxin ChpB
GenPept682121584toxin of the ChpB-ChpS toxin-antitoxin system
GenPept687674985ChpB toxin of the ChpB-ChpS toxin-antitoxin system, subunit of ChpB-ChpS complex
GenPept687679293ChpB toxin of the ChpB-ChpS toxin-antitoxin system, subunit of ChpB-ChpS complex
GenPept730585438toxin of the ChpB-ChpS toxin-antitoxin system
GenPept731473166toxin of the ChpB-ChpS toxin-antitoxin system
GenPept537067ORF_o116
GenPept506196ChpBK
GenPept169891504toxin of the ChpB-ChpS toxin-antitoxin system
GenPept170083669 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str. K-12 substr. DH10B]
GenPept1790672toxin of the ChpB-ChpS toxin-antitoxin system
GenPept238863671toxin of the ChpB-ChpS toxin-antitoxin system
GenPept238903330 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli BW2952]
GenPept307224376 toxin ChpB [Escherichia coli M718]
GenPept315138779toxin ChpB
GenPept331046414toxin-antitoxin system, toxin component, MazF family
GenPept359334332toxin of the ChpB-ChpS toxin-antitoxin system
GenPept389983727Sequence 88 from patent US 8183011
GenPept732686204toxin ChpB
GenPept802137472toxin of the ChpB-ChpS toxin-antitoxin system
GenPept808733194toxin ChpB
GenPept81243632probable growth inhibitor, PemK-like, autoregulated
GenPept817577358toxin of the ChpB-ChpS toxin-antitoxin system
GenPept817585639toxin of the ChpB-ChpS toxin-antitoxin system
GenPept817589780toxin of the ChpB-ChpS toxin-antitoxin system
GenPept817593919toxin of the ChpB-ChpS toxin-antitoxin system
GenPept82779484 toxin ChpB [Shigella dysenteriae Sd197]
GenPept85676976toxin of the ChpB-ChpS toxin-antitoxin system
GenPept89110945 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str. K-12 substr. W3110]
GenPept899725062toxin ChpB
GenPept899729414toxin ChpB
GenPept808716090toxin ChpB
GenPept808698620toxin ChpB
GenPept808703001toxin ChpB
GenPept808707371toxin ChpB
GenPept808728837toxin ChpB
GenPept808720514toxin ChpB
GenPept808711732toxin ChpB
GenBankAAC77182.1 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str. K-12 substr. MG1655]
GenBankACR65669.1 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli BW2952]
GenBankACB05211.1 toxin of the ChpB-ChpS toxin-antitoxin system [Escherichia coli str. K-12 substr. DH10B]
GenBankABB64342.1 probable growth inhibitor, PemK-like, autoregulated [Shigella dysenteriae Sd197]
GenBankAAA97122.1 ORF_o116 [Escherichia coli str. K-12 substr. MG1655]