University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P33927.1
Original Database ID ref NP_416700.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation ccmf_ecoli recname: full=cytochrome
c-type biogenesis protein ccmf
Sequence Length 647

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region178-466
Protein Length647
Template PDB Code2a06C
Template Region81-330
Sequence Identity30%
E-Value0.19
GA3410.14
MPQS0.258377
z-DOPE2.26
TSVMod MethodMTALL
TSVMod RMSD22.159
TSVMod NO350.006
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2a06bovine cytochrome bc1 complex with stigmatellin bound
DBALI2a06C 
CATH1.20.810.10 Domain: 2a06C00 Cytochrome Bc1 Complex; Chain C (68%)
JenaImageLibrary2a06 
Target Sequence
UniProtKBC6EA04SubName: Full=Cytochrome c assembly protein {ECO:0000313|EMBL:ACT28526.1};
InterProC6EA04 
PFAMC6EA04 
ProdomC6EA04 
UniProtKBA0A071CK74SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDZ19494.1};
InterProA0A071CK74 
PFAMA0A071CK74 
ProdomA0A071CK74 
UniProtKBA0A071DN77SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDZ41711.1};
InterProA0A071DN77 
PFAMA0A071DN77 
ProdomA0A071DN77 
UniProtKBA0A074HSH3SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KEN97293.1};
InterProA0A074HSH3 
PFAMA0A074HSH3 
ProdomA0A074HSH3 
UniProtKBA0A074J1M1SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KEO09890.1};
InterProA0A074J1M1 
PFAMA0A074J1M1 
ProdomA0A074J1M1 
UniProtKBA0A079FEA5SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDY55547.1};
InterProA0A079FEA5 
PFAMA0A079FEA5 
ProdomA0A079FEA5 
UniProtKBA0A079G244SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDY68395.1};
InterProA0A079G244 
PFAMA0A079G244 
ProdomA0A079G244 
UniProtKBA0A080GR18SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KEN89808.1};
InterProA0A080GR18 
PFAMA0A080GR18 
ProdomA0A080GR18 
UniProtKBA0A0A0FDP1SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KGM60590.1};
InterProA0A0A0FDP1 
PFAMA0A0A0FDP1 
ProdomA0A0A0FDP1 
UniProtKBA0A0E1M171SubName: Full=Heme lyase, CcmF subunit {ECO:0000313|EMBL:AJF57088.1};
InterProA0A0E1M171 
PFAMA0A0E1M171 
ProdomA0A0E1M171 
UniProtKBA0A0E2TS05SubName: Full=Cytochrome C biogenesis protein CcmF {ECO:0000313|EMBL:EYV13370.1};
InterProA0A0E2TS05 
PFAMA0A0E2TS05 
ProdomA0A0E2TS05 
UniProtKBA0A071ASU3SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDY64945.1};
InterProA0A071ASU3 
PFAMA0A071ASU3 
ProdomA0A071ASU3 
UniProtKBA0A070YEK4SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDX89480.1};
InterProA0A070YEK4 
PFAMA0A070YEK4 
ProdomA0A070YEK4 
UniProtKBE8Q1Q8SubName: Full=Heme lyase, CcmF subunit {ECO:0000313|EMBL:AFH12005.1};
InterProE8Q1Q8 
PFAME8Q1Q8 
ProdomE8Q1Q8 
UniProtKBI0ZUN2SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProI0ZUN2 
PFAMI0ZUN2 
ProdomI0ZUN2 
UniProtKBI2R0G5SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProI2R0G5 
PFAMI2R0G5 
ProdomI2R0G5 
UniProtKBC9QRB2SubName: Full=Cytochrome c-type biogenesis protein CcmF;SubName: Full=Heme lyase, CcmF subunit;Flags: Precursor;
InterProC9QRB2 
PFAMC9QRB2 
ProdomC9QRB2 
UniProtKBI2SWV9SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EIH25280.1};
InterProI2SWV9 
PFAMI2SWV9 
ProdomI2SWV9 
UniProtKBD8ARK8SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EFK14227.1};
InterProD8ARK8 
PFAMD8ARK8 
ProdomD8ARK8 
UniProtKBD8B434SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EFJ66154.1};
InterProD8B434 
PFAMD8B434 
ProdomD8B434 
UniProtKBI2Y8T8SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProI2Y8T8 
PFAMI2Y8T8 
ProdomI2Y8T8 
UniProtKBE3PDP8SubName: Full=Cytochrome C-type biogenesis protein {ECO:0000313|EMBL:CBJ01834.1};
InterProE3PDP8 
PFAME3PDP8 
ProdomE3PDP8 
UniProtKBI2XIB0SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EII48730.1};
InterProI2XIB0 
PFAMI2XIB0 
ProdomI2XIB0 
UniProtKBH4WBQ3SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH4WBQ3 
PFAMH4WBQ3 
ProdomH4WBQ3 
UniProtKBE9WWA4SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProE9WWA4 
PFAME9WWA4 
ProdomE9WWA4 
UniProtKBE9WGP0SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProE9WGP0 
PFAME9WGP0 
ProdomE9WGP0 
UniProtKBH4V3D4SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EHV55590.1};
InterProH4V3D4 
PFAMH4V3D4 
ProdomH4V3D4 
UniProtKBG5XFA5SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5XFA5 
PFAMG5XFA5 
ProdomG5XFA5 
UniProtKBG5U060SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5U060 
PFAMG5U060 
ProdomG5U060 
UniProtKBE9T9A4SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EGB90167.1};
InterProE9T9A4 
PFAME9T9A4 
ProdomE9T9A4 
UniProtKBH5L8L7SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH5L8L7 
PFAMH5L8L7 
ProdomH5L8L7 
UniProtKBH5KVW1SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH5KVW1 
PFAMH5KVW1 
ProdomH5KVW1 
UniProtKBB3X9E7SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProB3X9E7 
PFAMB3X9E7 
ProdomB3X9E7 
UniProtKBB6I194SubName: Full=Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:BAG77988.1};
InterProB6I194 
PFAMB6I194 
ProdomB6I194 
UniProtKBH5MW51SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH5MW51 
PFAMH5MW51 
ProdomH5MW51 
UniProtKBI2IB67SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProI2IB67 
PFAMI2IB67 
ProdomI2IB67 
UniProtKBG5XYY9SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5XYY9 
PFAMG5XYY9 
ProdomG5XYY9 
UniProtKBG5YIV3SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5YIV3 
PFAMG5YIV3 
ProdomG5YIV3 
UniProtKBG5UAA3SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5UAA3 
PFAMG5UAA3 
ProdomG5UAA3 
UniProtKBF8XC79SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EGU97709.1};
InterProF8XC79 
PFAMF8XC79 
ProdomF8XC79 
UniProtKBF8YHU4SubName: Full=Heme lyase, CcmF subunit;
InterProF8YHU4 
PFAMF8YHU4 
ProdomF8YHU4 
UniProtKBE9Z525SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProE9Z525 
PFAME9Z525 
ProdomE9Z525 
UniProtKBG2AWW2SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG2AWW2 
PFAMG2AWW2 
ProdomG2AWW2 
UniProtKBG2AI84SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EGW90240.1};
InterProG2AI84 
PFAMG2AI84 
ProdomG2AI84 
UniProtKBG2EZV1SubName: Full=Heme lyase, CcmF subunit;
InterProG2EZV1 
PFAMG2EZV1 
ProdomG2EZV1 
UniProtKBG0FCV1SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:AEJ57361.1};
InterProG0FCV1 
PFAMG0FCV1 
ProdomG0FCV1 
UniProtKBE9YBL3SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EGB68179.1};
InterProE9YBL3 
PFAME9YBL3 
ProdomE9YBL3 
UniProtKBG5VRE5SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5VRE5 
PFAMG5VRE5 
ProdomG5VRE5 
UniProtKBG5UU26SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5UU26 
PFAMG5UU26 
ProdomG5UU26 
UniProtKBC4ZU38SubName: Full=Heme lyase, CcmF subunit;
InterProC4ZU38 
PFAMC4ZU38 
ProdomC4ZU38 
UniProtKBI1BEU0SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProI1BEU0 
PFAMI1BEU0 
ProdomI1BEU0 
UniProtKBA0A026UL78SubName: Full=Cytochrome C biogenesis protein CcmF {ECO:0000313|EMBL:EZA30327.1};
InterProA0A026UL78 
PFAMA0A026UL78 
ProdomA0A026UL78 
UniProtKBD8ESM7SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EFK49322.1};
InterProD8ESM7 
PFAMD8ESM7 
ProdomD8ESM7 
UniProtKBA0A070TDN5SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDX27289.1};
InterProA0A070TDN5 
PFAMA0A070TDN5 
ProdomA0A070TDN5 
UniProtKBA0A073H2S5SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KEJ67752.1};
InterProA0A073H2S5 
PFAMA0A073H2S5 
ProdomA0A073H2S5 
UniProtKBA0A080EH96SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KEN48142.1};
InterProA0A080EH96 
PFAMA0A080EH96 
ProdomA0A080EH96 
UniProtKBA0A0E3KFW6SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:AKA91274.1};
InterProA0A0E3KFW6 
PFAMA0A0E3KFW6 
ProdomA0A0E3KFW6 
UniProtKBF9R5Z1SubName: Full=Heme lyase, CcmF subunit;
InterProF9R5Z1 
PFAMF9R5Z1 
ProdomF9R5Z1 
UniProtKBG5TLB6SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5TLB6 
PFAMG5TLB6 
ProdomG5TLB6 
UniProtKBG5X9U2SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5X9U2 
PFAMG5X9U2 
ProdomG5X9U2 
UniProtKBH4VIH8SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH4VIH8 
PFAMH4VIH8 
ProdomH4VIH8 
UniProtKBH5M397SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH5M397 
PFAMH5M397 
ProdomH5M397 
UniProtKBI2VS64SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProI2VS64 
PFAMI2VS64 
ProdomI2VS64 
UniProtKBC5W6T6SubName: Full=Cytochrome c assembly protein {ECO:0000313|EMBL:ACT28526.1};
InterProC5W6T6 
PFAMC5W6T6 
ProdomC5W6T6 
UniProtKBB1LKU2SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:ACB15816.1};
InterProB1LKU2 
PFAMB1LKU2 
ProdomB1LKU2 
UniProtKBA0A037Y7B1SubName: Full=Cytochrome C biogenesis protein CcmF {ECO:0000313|EMBL:AIX64071.1};SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:CDP70766.1};SubName: Full=Heme lyase, CcmF su
InterProA0A037Y7B1 
PFAMA0A037Y7B1 
ProdomA0A037Y7B1 
UniProtKBE8YE16SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:ADX50185.1};
InterProE8YE16 
PFAME8YE16 
ProdomE8YE16 
UniProtKBA0A069XT28SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDU33058.1};
InterProA0A069XT28 
PFAMA0A069XT28 
ProdomA0A069XT28 
UniProtKBF4SG38SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EGI11843.1};
InterProF4SG38 
PFAMF4SG38 
ProdomF4SG38 
UniProtKBH5LNU7SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH5LNU7 
PFAMH5LNU7 
ProdomH5LNU7 
UniProtKBD7Y4V5SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EFJ97319.1};
InterProD7Y4V5 
PFAMD7Y4V5 
ProdomD7Y4V5 
UniProtKBA0A069Z210SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDU53624.1};
InterProA0A069Z210 
PFAMA0A069Z210 
ProdomA0A069Z210 
UniProtKBA0A079H6N0SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDY99178.1};
InterProA0A079H6N0 
PFAMA0A079H6N0 
ProdomA0A079H6N0 
UniProtKBF9HR59SubName: Full=Cytochrome c-type biogenesis protein CcmF;SubName: Full=Uncharacterized protein;
InterProF9HR59 
PFAMF9HR59 
ProdomF9HR59 
UniProtKBG5WVJ9SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5WVJ9 
PFAMG5WVJ9 
ProdomG5WVJ9 
UniProtKBB7LAL9SubName: Full=CcmF protein {ECO:0000313|EMBL:CAU98319.1};
InterProB7LAL9 
PFAMB7LAL9 
ProdomB7LAL9 
UniProtKBI2P9K9SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProI2P9K9 
PFAMI2P9K9 
ProdomI2P9K9 
UniProtKBF9CIJ9SubName: Full=Heme lyase, CcmF subunit;
InterProF9CIJ9 
PFAMF9CIJ9 
ProdomF9CIJ9 
UniProtKBG2BBL9SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG2BBL9 
PFAMG2BBL9 
ProdomG2BBL9 
UniProtKBG2CMH8SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG2CMH8 
PFAMG2CMH8 
ProdomG2CMH8 
UniProtKBG5VCA1SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5VCA1 
PFAMG5VCA1 
ProdomG5VCA1 
UniProtKBG5W8A9SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProG5W8A9 
PFAMG5W8A9 
ProdomG5W8A9 
UniProtKBH0QDF3SubName: Full=Heme lyase, CcmF subunit;
InterProH0QDF3 
PFAMH0QDF3 
ProdomH0QDF3 
UniProtKBH4ULH1SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EHV56779.1};
InterProH4ULH1 
PFAMH4ULH1 
ProdomH4ULH1 
UniProtKBE9Y110SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProE9Y110 
PFAME9Y110 
ProdomE9Y110 
UniProtKBB1X892SubName: Full=Heme lyase, CcmF subunit;
InterProB1X892 
PFAMB1X892 
ProdomB1X892 
UniProtKBH5MHN5SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH5MHN5 
PFAMH5MHN5 
ProdomH5MHN5 
UniProtKBE9W3X5SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProE9W3X5 
PFAME9W3X5 
ProdomE9W3X5 
UniProtKBA0A0G3HXX6SubName: Full=Heme lyase, CcmF subunit protein {ECO:0000313|EMBL:AKK18161.1};
InterProA0A0G3HXX6 
PFAMA0A0G3HXX6 
ProdomA0A0G3HXX6 
UniProtKBA0A0E0XWP5SubName: Full=Heme lyase, CcmF subunit {ECO:0000313|EMBL:AFS73598.1};
InterProA0A0E0XWP5 
PFAMA0A0E0XWP5 
ProdomA0A0E0XWP5 
UniProtKBC6ULK8SubName: Full=Heme lyase, CcmF subunit;
InterProC6ULK8 
PFAMC6ULK8 
ProdomC6ULK8 
UniProtKBD7ZVA3SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:EFK25178.1};
InterProD7ZVA3 
PFAMD7ZVA3 
ProdomD7ZVA3 
UniProtKBI2YL14SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProI2YL14 
PFAMI2YL14 
ProdomI2YL14 
UniProtKBE7ICG0SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProE7ICG0 
PFAME7ICG0 
ProdomE7ICG0 
UniProtKBA0A070URJ1SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDX40808.1};
InterProA0A070URJ1 
PFAMA0A070URJ1 
ProdomA0A070URJ1 
UniProtKBA0A071C4Y6SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDY92194.1};
InterProA0A071C4Y6 
PFAMA0A071C4Y6 
ProdomA0A071C4Y6 
UniProtKBA0A073TJY0SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KEL28902.1};
InterProA0A073TJY0 
PFAMA0A073TJY0 
ProdomA0A073TJY0 
UniProtKBA0A079DN86SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KDY24279.1};
InterProA0A079DN86 
PFAMA0A079DN86 
ProdomA0A079DN86 
UniProtKBA0A080F6Y8SubName: Full=Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:KEN55905.1};
InterProA0A080F6Y8 
PFAMA0A080F6Y8 
ProdomA0A080F6Y8 
UniProtKBH4X721SubName: Full=Cytochrome c-type biogenesis protein CcmF;
InterProH4X721 
PFAMH4X721 
ProdomH4X721