University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P36675
Original Database ID ref YP_588467.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation recname: full=alternative ribosome-rescue
factor a;
Sequence Length 72

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-55
Protein Length72
Template PDB Code2z64A
Template Region565-624
Sequence Identity11%
E-Value0
GA3410
MPQS0.572889
z-DOPE-0.06
TSVMod MethodMTALL
TSVMod RMSD12.113
TSVMod NO350.049
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2z64crystal structure of mouse tlr4 and mouse md-2 complex
DBALI2z64A 
JenaImageLibrary2z64 
Target Sequence
UniProtKBH4FI02SubName: Full=Uncharacterized protein;
InterProH4FI02 
PFAMH4FI02 
ProdomH4FI02 
UniProtKBA0A073TPR4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL21885.1};
InterProA0A073TPR4 
PFAMA0A073TPR4 
ProdomA0A073TPR4 
UniProtKBA0A0A0FHN1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGM62010.1};
InterProA0A0A0FHN1 
PFAMA0A0A0FHN1 
ProdomA0A0A0FHN1 
UniProtKBA0A0E1M6K7SubName: Full=Alternate ribosome-rescue factor A {ECO:0000313|EMBL:AJF58099.1};
InterProA0A0E1M6K7 
PFAMA0A0E1M6K7 
ProdomA0A0E1M6K7 
UniProtKBA0A0E1T4Y5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDU66231.1};
InterProA0A0E1T4Y5 
PFAMA0A0E1T4Y5 
ProdomA0A0E1T4Y5 
UniProtKBA0A0E2TIG5SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:EYV06156.1};
InterProA0A0E2TIG5 
PFAMA0A0E2TIG5 
ProdomA0A0E2TIG5 
UniProtKBA0A0E3N1N5SubName: Full=Alternative ribosome-rescue factor A {ECO:0000313|EMBL:AKA92470.1};
InterProA0A0E3N1N5 
PFAMA0A0E3N1N5 
ProdomA0A0E3N1N5 
UniProtKBA0A0H3XCT8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKM36833.1};
InterProA0A0H3XCT8 
PFAMA0A0H3XCT8 
ProdomA0A0H3XCT8 
UniProtKBA0A0I1XMY3SubName: Full=Alternative ribosome-rescue factor A {ECO:0000313|EMBL:CSS14165.1};
InterProA0A0I1XMY3 
PFAMA0A0I1XMY3 
ProdomA0A0I1XMY3 
UniProtKBC4ZUE6SubName: Full=Conserved protein;
InterProC4ZUE6 
PFAMC4ZUE6 
ProdomC4ZUE6 
UniProtKBC6EGH5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT27531.1};
InterProC6EGH5 
PFAMC6EGH5 
ProdomC6EGH5 
UniProtKBA0A070DFD3SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:KDV36904.1};
InterProA0A070DFD3 
PFAMA0A070DFD3 
ProdomA0A070DFD3 
UniProtKBA0A028E9S7SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:EZE56594.1};
InterProA0A028E9S7 
PFAMA0A028E9S7 
ProdomA0A028E9S7 
UniProtKBB2N9U0SubName: Full=Putative uncharacterized protein;
InterProB2N9U0 
PFAMB2N9U0 
ProdomB2N9U0 
UniProtKBG5Y8E9SubName: Full=Putative uncharacterized protein;
InterProG5Y8E9 
PFAMG5Y8E9 
ProdomG5Y8E9 
UniProtKBI2PJ53SubName: Full=Uncharacterized protein;
InterProI2PJ53 
PFAMI2PJ53 
ProdomI2PJ53 
UniProtKBI2RSJ1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIG90957.1};
InterProI2RSJ1 
PFAMI2RSJ1 
ProdomI2RSJ1 
UniProtKBI2UH84SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIH77560.1};
InterProI2UH84 
PFAMI2UH84 
ProdomI2UH84 
UniProtKBI2HYE9SubName: Full=Uncharacterized protein;
InterProI2HYE9 
PFAMI2HYE9 
ProdomI2HYE9 
UniProtKBI2YPS7SubName: Full=Uncharacterized protein;
InterProI2YPS7 
PFAMI2YPS7 
ProdomI2YPS7 
UniProtKBI2XVU7SubName: Full=Uncharacterized protein;
InterProI2XVU7 
PFAMI2XVU7 
ProdomI2XVU7 
UniProtKBI2ZPP8SubName: Full=Uncharacterized protein;
InterProI2ZPP8 
PFAMI2ZPP8 
ProdomI2ZPP8 
UniProtKBI2VYR0SubName: Full=Uncharacterized protein;
InterProI2VYR0 
PFAMI2VYR0 
ProdomI2VYR0 
UniProtKBB1X6E3SubName: Full=Conserved protein;
InterProB1X6E3 
PFAMB1X6E3 
ProdomB1X6E3 
UniProtKBC1NEQ8SubName: Full=Putative uncharacterized protein;
InterProC1NEQ8 
PFAMC1NEQ8 
ProdomC1NEQ8 
UniProtKBB7NDR3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CAR14913.1};
InterProB7NDR3 
PFAMB7NDR3 
ProdomB7NDR3 
UniProtKBF8YLW8SubName: Full=Putative uncharacterized protein;
InterProF8YLW8 
PFAMF8YLW8 
ProdomF8YLW8 
UniProtKBE9YJI8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGB65369.1};
InterProE9YJI8 
PFAME9YJI8 
ProdomE9YJI8 
UniProtKBE8HLJ8SubName: Full=Uncharacterized protein;
InterProE8HLJ8 
PFAME8HLJ8 
ProdomE8HLJ8 
UniProtKBC6UV78SubName: Full=Conserved protein;
InterProC6UV78 
PFAMC6UV78 
ProdomC6UV78 
UniProtKBG5U3B7SubName: Full=Putative uncharacterized protein;
InterProG5U3B7 
PFAMG5U3B7 
ProdomG5U3B7 
UniProtKBG2F823SubName: Full=Putative uncharacterized protein;
InterProG2F823 
PFAMG2F823 
ProdomG2F823 
UniProtKBG5WZL6SubName: Full=Putative uncharacterized protein;
InterProG5WZL6 
PFAMG5WZL6 
ProdomG5WZL6 
UniProtKBG5WJH9SubName: Full=Putative uncharacterized protein;
InterProG5WJH9 
PFAMG5WJH9 
ProdomG5WJH9 
UniProtKBG5Y2A6SubName: Full=Putative uncharacterized protein;
InterProG5Y2A6 
PFAMG5Y2A6 
ProdomG5Y2A6 
UniProtKBH1C055SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EHP64821.1};
InterProH1C055 
PFAMH1C055 
ProdomH1C055 
UniProtKBF4NN13SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGJ07544.1};
InterProF4NN13 
PFAMF4NN13 
ProdomF4NN13 
UniProtKBF4SQ18SubName: Full=Putative cytoplasmic protein {ECO:0000313|EMBL:EGI08507.1};
InterProF4SQ18 
PFAMF4SQ18 
ProdomF4SQ18 
UniProtKBE8I066SubName: Full=Uncharacterized protein;
InterProE8I066 
PFAME8I066 
ProdomE8I066 
UniProtKBD6IEJ1SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFF04271.2};
InterProD6IEJ1 
PFAMD6IEJ1 
ProdomD6IEJ1 
UniProtKBD7X2X3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ75386.1};
InterProD7X2X3 
PFAMD7X2X3 
ProdomD7X2X3 
UniProtKBC8UGP1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAI37885.1};
InterProC8UGP1 
PFAMC8UGP1 
ProdomC8UGP1 
UniProtKBE0R6C1SubName: Full=Uncharacterized protein;
InterProE0R6C1 
PFAME0R6C1 
ProdomE0R6C1 
UniProtKBE7HH27SubName: Full=Putative uncharacterized protein;
InterProE7HH27 
PFAME7HH27 
ProdomE7HH27 
UniProtKBE8H7J3SubName: Full=Uncharacterized protein;
InterProE8H7J3 
PFAME8H7J3 
ProdomE8H7J3 
UniProtKBD8B039SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ67557.1};
InterProD8B039 
PFAMD8B039 
ProdomD8B039 
UniProtKBB1IQ08SubName: Full=Putative uncharacterized protein;
InterProB1IQ08 
PFAMB1IQ08 
ProdomB1IQ08 
UniProtKBE8J7A2SubName: Full=Putative uncharacterized protein;
InterProE8J7A2 
PFAME8J7A2 
ProdomE8J7A2 
UniProtKBE8IEB5SubName: Full=Uncharacterized protein;
InterProE8IEB5 
PFAME8IEB5 
ProdomE8IEB5 
UniProtKBH1F9F2SubName: Full=Putative uncharacterized protein;
InterProH1F9F2 
PFAMH1F9F2 
ProdomH1F9F2 
UniProtKBH0QE35SubName: Full=Conserved protein;
InterProH0QE35 
PFAMH0QE35 
ProdomH0QE35 
UniProtKBA0A025GKB7SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:EYV64688.1};
InterProA0A025GKB7 
PFAMA0A025GKB7 
ProdomA0A025GKB7 
UniProtKBI3A9R9SubName: Full=Uncharacterized protein;
InterProI3A9R9 
PFAMI3A9R9 
ProdomI3A9R9 
UniProtKBA0A027ZMM0SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:EZE00272.1};
InterProA0A027ZMM0 
PFAMA0A027ZMM0 
ProdomA0A027ZMM0 
UniProtKBA0A0A8UKL4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CEK07304.1};
InterProA0A0A8UKL4 
PFAMA0A0A8UKL4 
ProdomA0A0A8UKL4 
UniProtKBA0A0F6FD00SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AJA28290.1};
InterProA0A0F6FD00 
PFAMA0A0F6FD00 
ProdomA0A0F6FD00 
UniProtKBC6UFP1SubName: Full=Putative uncharacterized protein yhdL;
InterProC6UFP1 
PFAMC6UFP1 
ProdomC6UFP1 
UniProtKBD8AHE9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK17439.1};
InterProD8AHE9 
PFAMD8AHE9 
ProdomD8AHE9 
UniProtKBE1HW10SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK75735.1};
InterProE1HW10 
PFAME1HW10 
ProdomE1HW10 
UniProtKBE9Y6R4SubName: Full=Putative uncharacterized protein;
InterProE9Y6R4 
PFAME9Y6R4 
ProdomE9Y6R4 
UniProtKBF9CM95SubName: Full=Putative uncharacterized protein;
InterProF9CM95 
PFAMF9CM95 
ProdomF9CM95 
UniProtKBG5VUQ5SubName: Full=Putative uncharacterized protein;
InterProG5VUQ5 
PFAMG5VUQ5 
ProdomG5VUQ5 
UniProtKBI2V229SubName: Full=Uncharacterized protein;
InterProI2V229 
PFAMI2V229 
ProdomI2V229 
UniProtKBH6MGU9SubName: Full=Uncharacterized protein;
InterProH6MGU9 
PFAMH6MGU9 
ProdomH6MGU9 
UniProtKBG5VFM9SubName: Full=Putative uncharacterized protein;
InterProG5VFM9 
PFAMG5VFM9 
ProdomG5VFM9 
UniProtKBA0A026HKC3SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:EYY82573.1};
InterProA0A026HKC3 
PFAMA0A026HKC3 
ProdomA0A026HKC3 
UniProtKBG5UEL0SubName: Full=Putative uncharacterized protein;
InterProG5UEL0 
PFAMG5UEL0 
ProdomG5UEL0 
UniProtKBA0A027T9P1SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:EZD22076.1};
InterProA0A027T9P1 
PFAMA0A027T9P1 
ProdomA0A027T9P1 
UniProtKBC9QXJ1SubName: Full=Uncharacterized protein;
InterProC9QXJ1 
PFAMC9QXJ1 
ProdomC9QXJ1 
UniProtKBG5TNZ3SubName: Full=Putative uncharacterized protein;
InterProG5TNZ3 
PFAMG5TNZ3 
ProdomG5TNZ3 
UniProtKBI2PIK2SubName: Full=Uncharacterized protein;
InterProI2PIK2 
PFAMI2PIK2 
ProdomI2PIK2 
UniProtKBA0A027Y1N8SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:EZD80177.1};
InterProA0A027Y1N8 
PFAMA0A027Y1N8 
ProdomA0A027Y1N8 
UniProtKBA0A0F6C9P7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFJ30953.1};
InterProA0A0F6C9P7 
PFAMA0A0F6C9P7 
ProdomA0A0F6C9P7 
UniProtKBD7ZZX7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK23561.1};
InterProD7ZZX7 
PFAMD7ZZX7 
ProdomD7ZZX7 
UniProtKBE9X0Y0SubName: Full=Putative uncharacterized protein;
InterProE9X0Y0 
PFAME9X0Y0 
ProdomE9X0Y0 
UniProtKBG5WBC6SubName: Full=Putative uncharacterized protein;
InterProG5WBC6 
PFAMG5WBC6 
ProdomG5WBC6 
UniProtKBI2A0X9SubName: Full=Uncharacterized protein;
InterProI2A0X9 
PFAMI2A0X9 
ProdomI2A0X9 
UniProtKBD7YCE8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK05012.1};
InterProD7YCE8 
PFAMD7YCE8 
ProdomD7YCE8 
UniProtKBE1HHQ6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK92538.1};
InterProE1HHQ6 
PFAME1HHQ6 
ProdomE1HHQ6 
UniProtKBD8E836SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK45740.1};
InterProD8E836 
PFAMD8E836 
ProdomD8E836 
UniProtKBE8IS85SubName: Full=Uncharacterized protein;
InterProE8IS85 
PFAME8IS85 
ProdomE8IS85 
UniProtKBE9WMQ3SubName: Full=Putative uncharacterized protein;
InterProE9WMQ3 
PFAME9WMQ3 
ProdomE9WMQ3 
UniProtKBF4UE57SubName: Full=Putative cytoplasmic protein;
InterProF4UE57 
PFAMF4UE57 
ProdomF4UE57 
UniProtKBF4VJT2SubName: Full=Putative cytoplasmic protein {ECO:0000313|EMBL:EGI43857.1};
InterProF4VJT2 
PFAMF4VJT2 
ProdomF4VJT2 
UniProtKBC8TIJ3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAI27563.1};
InterProC8TIJ3 
PFAMC8TIJ3 
ProdomC8TIJ3 
UniProtKBG5UYA6SubName: Full=Putative uncharacterized protein;
InterProG5UYA6 
PFAMG5UYA6 
ProdomG5UYA6 
UniProtKBG5XIB1SubName: Full=Putative uncharacterized protein;
InterProG5XIB1 
PFAMG5XIB1 
ProdomG5XIB1 
UniProtKBB7LHZ3SubName: Full=YhdL protein {ECO:0000313|EMBL:CAU99989.1};
InterProB7LHZ3 
PFAMB7LHZ3 
ProdomB7LHZ3 
UniProtKBC5W9M2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT27531.1};
InterProC5W9M2 
PFAMC5W9M2 
ProdomC5W9M2 
UniProtKBA0A0J3VMZ9SubName: Full=Alternative ribosome-rescue factor A {ECO:0000313|EMBL:KME66826.1};
InterProA0A0J3VMZ9 
PFAMA0A0J3VMZ9 
ProdomA0A0J3VMZ9 
UniProtKBF9I044SubName: Full=Uncharacterized protein;
InterProF9I044 
PFAMF9I044 
ProdomF9I044 
UniProtKBI2VGH2SubName: Full=Uncharacterized protein;
InterProI2VGH2 
PFAMI2VGH2 
ProdomI2VGH2 
UniProtKBI2Y9H6SubName: Full=Uncharacterized protein;
InterProI2Y9H6 
PFAMI2Y9H6 
ProdomI2Y9H6 
UniProtKBA8A596SubName: Full=Putative uncharacterized protein;
InterProA8A596 
PFAMA8A596 
ProdomA8A596 
UniProtKBA0A028BA05SubName: Full=Ribosome rescue factor A {ECO:0000313|EMBL:EZE20015.1};
InterProA0A028BA05 
PFAMA0A028BA05 
ProdomA0A028BA05 
UniProtKBA0A071DG42SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ40414.1};
InterProA0A071DG42 
PFAMA0A071DG42 
ProdomA0A071DG42 
UniProtKBA0A0E0XTE5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFS72438.1};
InterProA0A0E0XTE5 
PFAMA0A0E0XTE5 
ProdomA0A0E0XTE5 
UniProtKBA0A0E1ZRT8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIL31340.1};
InterProA0A0E1ZRT8 
PFAMA0A0E1ZRT8 
ProdomA0A0E1ZRT8 
UniProtKBA0A0G3HSG6SubName: Full=Alternate ribosome-rescue factor A protein {ECO:0000313|EMBL:AKK14913.1};
InterProA0A0G3HSG6 
PFAMA0A0G3HSG6 
ProdomA0A0G3HSG6 
UniProtKBF9R483SubName: Full=Putative uncharacterized protein;
InterProF9R483 
PFAMF9R483 
ProdomF9R483