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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link B1XE09
Original Database ID UP P37008
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation subname: full=cp4-6 prophage;
conserved protein;
Sequence Length 116

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region6-116
Protein Length116
Template PDB Code2h28A
Template Region17-123
Sequence Identity56%
E-Value0
GA3411
MPQS1.5571
z-DOPE-0.6
TSVMod MethodMSALL
TSVMod RMSD2.853
TSVMod NO350.858
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2h28crystal structure of yeeu from e. coli. northeast structural genomics target er304
DBALI2h28A 
CATH3.30.450.20 Domain: 2h28A01 Beta-Lactamase (100%)
JenaImageLibrary2h28 
Target Sequence
UniProtKBN4MQG1SubName: Full=Putative antitoxin YfjZ {ECO:0000313|EMBL:ENG91622.1};
InterProN4MQG1 
PFAMN4MQG1 
ProdomN4MQG1 
UniProtKBF9R6D8SubName: Full=Putative uncharacterized protein;
InterProF9R6D8 
PFAMF9R6D8 
ProdomF9R6D8 
UniProtKBL4A6U8SubName: Full=Uncharacterized protein;
InterProL4A6U8 
PFAML4A6U8 
ProdomL4A6U8 
UniProtKBN4PGI1SubName: Full=Putative antitoxin YfjZ {ECO:0000313|EMBL:ENH07431.1};
InterProN4PGI1 
PFAMN4PGI1 
ProdomN4PGI1 
UniProtKBN4NK03SubName: Full=Putative antitoxin YfjZ {ECO:0000313|EMBL:ENG96415.1};
InterProN4NK03 
PFAMN4NK03 
ProdomN4NK03 
UniProtKBM2NS69SubName: Full=Uncharacterized protein;
InterProM2NS69 
PFAMM2NS69 
ProdomM2NS69 
UniProtKBN3F9U7SubName: Full=Putative antitoxin YfjZ {ECO:0000313|EMBL:ENC93688.1};
InterProN3F9U7 
PFAMN3F9U7 
ProdomN3F9U7 
UniProtKBN2JT57SubName: Full=Putative antitoxin YfjZ {ECO:0000313|EMBL:ENA42039.1};
InterProN2JT57 
PFAMN2JT57 
ProdomN2JT57 
UniProtKBM9KLU8SubName: Full=Putative antitoxin YfjZ {ECO:0000313|EMBL:EMX90359.1};
InterProM9KLU8 
PFAMM9KLU8 
ProdomM9KLU8 
UniProtKBP37008RecName: Full=Putative uncharacterized protein YagB;
InterProP37008 
PFAMP37008 
ProdomP37008 
UniProtKBM9GEG0SubName: Full=Putative antitoxin YfjZ {ECO:0000313|EMBL:EMX23352.1};
InterProM9GEG0 
PFAMM9GEG0 
ProdomM9GEG0 
UniProtKBQ2MCF4RecName: Full=Putative uncharacterized protein YagB;
InterProQ2MCF4 
PFAMQ2MCF4 
ProdomQ2MCF4 
UniProtKBB1XE09SubName: Full=CP4-6 prophage; conserved protein;
InterProB1XE09 
PFAMB1XE09 
ProdomB1XE09 
UniProtKBP77583RecName: Full=Putative uncharacterized protein YagB;
InterProP77583 
PFAMP77583 
ProdomP77583 
UniProtKBC9QRD1SubName: Full=Uncharacterized protein;SubName: Full=YagBYeeUYfjZ family protein;
InterProC9QRD1 
PFAMC9QRD1 
ProdomC9QRD1 
UniProtKBT9U672SubName: Full=Uncharacterized protein;
InterProT9U672 
PFAMT9U672 
ProdomT9U672 
UniProtKBT9Q8G5SubName: Full=Uncharacterized protein;
InterProT9Q8G5 
PFAMT9Q8G5 
ProdomT9Q8G5 
UniProtKBA0A373ESP4SubName: Full=Antitoxin of toxin-antitoxin system {ECO:0000313|EMBL:GCQ08949.1}SubName: Full=Type IV toxin-antitoxin system YeeU family antitoxin {ECO:0000313|EMBL:TGI59088.1}SubName: Full=YagBYeeUYfj
InterProA0A373ESP4 
PFAMA0A373ESP4 
ProdomA0A373ESP4 
UniProtKBC9QRD1SubName: Full=Putative uncharacterized protein yagB;SubName: Full=YagBYeeUYfjZ family protein;
InterProC9QRD1 
PFAMC9QRD1 
ProdomC9QRD1 
UniProtKBA0A7B5MFP9SubName: Full=Type IV toxin-antitoxin system YeeU family antitoxin {ECO:0000313|EMBL:HAJ6405146.1}
InterProA0A7B5MFP9 
PFAMA0A7B5MFP9 
ProdomA0A7B5MFP9 
UniProtKBF9R6D8SubName: Full=Putative uncharacterized protein;
InterProF9R6D8 
PFAMF9R6D8 
ProdomF9R6D8 
UniProtKBB1XE09SubName: Full=CP4-6 prophage; conserved protein;
InterProB1XE09 
PFAMB1XE09 
ProdomB1XE09 
UniProtKBQ2MCF4Hypothetical protein yagB
InterProQ2MCF4 
PFAMQ2MCF4 
ProdomQ2MCF4 
UniProtKBP37008RecName: Full=Putative uncharacterized protein YagB;
InterProP37008 
PFAMP37008 
ProdomP37008 
UniProtKBP37008.2YAGB_ECOLI RecName: Full=Putative uncharacterized protein yagB
InterProP37008.2 
PFAMP37008.2 
ProdomP37008.2 
UniProtKBP77583RecName: Full=Putative uncharacterized protein YagB;
InterProP77583 
PFAMP77583 
ProdomP77583 
UniProtKBA0A385XJ59Orphan antitoxin YagB
InterProA0A385XJ59 
PFAMA0A385XJ59 
ProdomA0A385XJ59 
UniProtKBQ2MCF4RecName: Full=Putative uncharacterized protein YagB;
InterProQ2MCF4 
PFAMQ2MCF4 
ProdomQ2MCF4 
RefSeqAP_000920.1 hypothetical protein [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_001729211.1 CP4-6 prophage; hypothetical protein [Escherichia coli str. K-12 substr. DH10B]
RefSeqYP_009518742.1CP4-6 prophage; orphan antitoxin YagB
RefSeqNP_414800.2 CP4-6 prophage; conserved protein [Escherichia coli K12]
GenPept687675485CP4-6 prophage; conserved protein
GenPept90111107 CP4-6 prophage; conserved protein [Escherichia coli K12]
GenPept808712166hypothetical protein SH03_05105
GenPept808707806hypothetical protein SH08_05115
GenPept808703426hypothetical protein SH02_05070
GenPept808699055hypothetical protein SH05_05115
GenPept732685776hypothetical protein EO53_16965
GenPept687671199CP4-6 prophage; conserved protein
GenPept664682702hypothetical protein HQ24_01320
GenPept315134951hypothetical protein ECDH1ME8569_0254
GenPept260450539YagBYeeUYfjZ family protein
GenPept1723205YAGB_ECOLI RecName: Full=Putative uncharacterized protein yagB
GenPept170079891 CP4-6 prophage; hypothetical protein [Escherichia coli str. K-12 substr. DH10B]
GenPept808716578hypothetical protein SH06_05415
GenPept808720947hypothetical protein SH04_05095
GenPept808729268hypothetical protein SH07_05100
GenPept932858189YafW protein (antitoxin to YkfI)
GenPept899730032hypothetical protein ADZ28_01375
GenPept899725670hypothetical protein ADZ27_01375
GenPept899721316hypothetical protein ADS71_01375
GenPept89107140 hypothetical protein [Escherichia coli str. K-12 substr. W3110]
GenPept87081711CP4-6 prophage; conserved protein
GenPept85674410conserved hypothetical protein
GenPept808733680hypothetical protein SF31_05415
GenPept169887726CP4-6 prophage; conserved protein
GenBankACX40961.1 YagBYeeUYfjZ family protein [Escherichia coli DH1]
GenBankAAC73369.2 CP4-6 prophage; conserved protein [Escherichia coli K12]
GenBankACB01433.1 CP4-6 prophage; conserved protein [Escherichia coli str. K-12 substr. DH10B]