University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P37757.2
Original Database ID ref NP_415981.1
Organism Escherichia coli, Shigella sonnei, etc.
Annotation ydde_ecoli recname: full=uncharacterized
isomerase ydde; altname: full=orfb
Sequence Length 297

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-297
Protein Length297
Template PDB Code1qyaA
Template Region1-297
Sequence Identity100%
E-Value0
GA3411
MPQS2.249
z-DOPE-1.69
TSVMod MethodMTALL
TSVMod RMSD0.793
TSVMod NO350.998
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1qyacrystal structure of e. coli protein ydde
DBALI1qyaA 
CATH3.10.310.10 Domain: 1qyaA01 Diaminopimelate Epimerase; Chain A, domain 1 (100%)
CATH3.10.310.10 Domain: 1qyaA02 Diaminopimelate Epimerase; Chain A, domain 1 (100%)
JenaImageLibrary1qya 
Target Sequence
UniProtKBK3JS73SubName: Full=Uncharacterized protein;
InterProK3JS73 
PFAMK3JS73 
ProdomK3JS73 
UniProtKBA0A070XZM3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX84762.1};
InterProA0A070XZM3 
PFAMA0A070XZM3 
ProdomA0A070XZM3 
UniProtKBA0A071AMZ3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY63322.1};
InterProA0A071AMZ3 
PFAMA0A071AMZ3 
ProdomA0A071AMZ3 
UniProtKBA0A079FDG7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY54248.1};
InterProA0A079FDG7 
PFAMA0A079FDG7 
ProdomA0A079FDG7 
UniProtKBA0A079FHZ0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY59819.1};
InterProA0A079FHZ0 
PFAMA0A079FHZ0 
ProdomA0A079FHZ0 
UniProtKBA0A080GQQ0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN90996.1};
InterProA0A080GQQ0 
PFAMA0A080GQQ0 
ProdomA0A080GQQ0 
UniProtKBA0A090JIY3SubName: Full=Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:KGM81926.1};EC=5.1.-.- {ECO:0000313|EMBL:KGM81926.1};SubName: Full=Putative isomerase YddE {ECO:0000313|EMBL:KGM69366.1};EC=5
InterProA0A090JIY3 
PFAMA0A090JIY3 
ProdomA0A090JIY3 
UniProtKBA0A0E3MYE3SubName: Full=Putative isomerase YddE {ECO:0000313|EMBL:AKA90507.1};
InterProA0A0E3MYE3 
PFAMA0A0E3MYE3 
ProdomA0A0E3MYE3 
UniProtKBA0A0G3HW52SubName: Full=Conserved putative enzyme, PhzC-PhzF family protein {ECO:0000313|EMBL:AKK17584.1};
InterProA0A0G3HW52 
PFAMA0A0G3HW52 
ProdomA0A0G3HW52 
UniProtKBP37757RecName: Full=Uncharacterized isomerase YddE;EC=5.1.-.-;AltName: Full=ORFB;
InterProP37757 
PFAMP37757 
ProdomP37757 
UniProtKBS1KWM6SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS1KWM6 
PFAMS1KWM6 
ProdomS1KWM6 
UniProtKBL2ZBS5SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL2ZBS5 
PFAML2ZBS5 
ProdomL2ZBS5 
UniProtKBL3RL46SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL3RL46 
PFAML3RL46 
ProdomL3RL46 
UniProtKBL3VU79SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL3VU79 
PFAML3VU79 
ProdomL3VU79 
UniProtKBL3X0Y8SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL3X0Y8 
PFAML3X0Y8 
ProdomL3X0Y8 
UniProtKBM2P914SubName: Full=Uncharacterized protein;
InterProM2P914 
PFAMM2P914 
ProdomM2P914 
UniProtKBM7V5L6SubName: Full=Uncharacterized protein;
InterProM7V5L6 
PFAMM7V5L6 
ProdomM7V5L6 
UniProtKBN2FJ39SubName: Full=Uncharacterized protein;
InterProN2FJ39 
PFAMN2FJ39 
ProdomN2FJ39 
UniProtKBE9WSR1SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProE9WSR1 
PFAME9WSR1 
ProdomE9WSR1 
UniProtKBT7KCD1SubName: Full=Uncharacterized protein;
InterProT7KCD1 
PFAMT7KCD1 
ProdomT7KCD1 
UniProtKBT8A390SubName: Full=Uncharacterized protein;
InterProT8A390 
PFAMT8A390 
ProdomT8A390 
UniProtKBT8ZU35SubName: Full=Uncharacterized protein;
InterProT8ZU35 
PFAMT8ZU35 
ProdomT8ZU35 
UniProtKBD8BRG3SubName: Full=Phenazine biosynthesis protein, PhzF family {ECO:0000313|EMBL:EFI90722.1};
InterProD8BRG3 
PFAMD8BRG3 
ProdomD8BRG3 
UniProtKBE1HI73SubName: Full=Phenazine biosynthesis protein, PhzF family {ECO:0000313|EMBL:EFK92377.1};
InterProE1HI73 
PFAME1HI73 
ProdomE1HI73 
UniProtKBT8XHZ6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EQX53708.1};
InterProT8XHZ6 
PFAMT8XHZ6 
ProdomT8XHZ6 
UniProtKBH4VVT1SubName: Full=Uncharacterized protein;
InterProH4VVT1 
PFAMH4VVT1 
ProdomH4VVT1 
UniProtKBF4SIQ1SubName: Full=Phenazine biosynthesis protein PhzF family protein {ECO:0000313|EMBL:EGI11062.1};
InterProF4SIQ1 
PFAMF4SIQ1 
ProdomF4SIQ1 
UniProtKBF9R5W7SubName: Full=Putative uncharacterized protein;
InterProF9R5W7 
PFAMF9R5W7 
ProdomF9R5W7 
UniProtKBG2AUG7SubName: Full=Phenazine biosynthesis protein PhzF family protein;EC=5.1.-.-;
InterProG2AUG7 
PFAMG2AUG7 
ProdomG2AUG7 
UniProtKBG2B946SubName: Full=Phenazine biosynthesis protein PhzF family protein;EC=5.1.-.-;
InterProG2B946 
PFAMG2B946 
ProdomG2B946 
UniProtKBC9QW03SubName: Full=Phenazine biosynthesis protein PhzF family;SubName: Full=Uncharacterized protein;
InterProC9QW03 
PFAMC9QW03 
ProdomC9QW03 
UniProtKBC4ZWN5SubName: Full=Conserved protein;
InterProC4ZWN5 
PFAMC4ZWN5 
ProdomC4ZWN5 
UniProtKBT9ICL8SubName: Full=Uncharacterized protein;
InterProT9ICL8 
PFAMT9ICL8 
ProdomT9ICL8 
UniProtKBT9MLN8SubName: Full=Uncharacterized protein;
InterProT9MLN8 
PFAMT9MLN8 
ProdomT9MLN8 
UniProtKBT9V5N1SubName: Full=Uncharacterized protein;
InterProT9V5N1 
PFAMT9V5N1 
ProdomT9V5N1 
UniProtKBU0C6Y6SubName: Full=Uncharacterized protein;
InterProU0C6Y6 
PFAMU0C6Y6 
ProdomU0C6Y6 
UniProtKBH0QCQ8SubName: Full=Conserved protein;
InterProH0QCQ8 
PFAMH0QCQ8 
ProdomH0QCQ8 
UniProtKBH4VFI1SubName: Full=Uncharacterized protein;
InterProH4VFI1 
PFAMH4VFI1 
ProdomH4VFI1 
UniProtKBS1D143SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS1D143 
PFAMS1D143 
ProdomS1D143 
UniProtKBB1XE55SubName: Full=Conserved protein;
InterProB1XE55 
PFAMB1XE55 
ProdomB1XE55 
UniProtKBG2F8D5SubName: Full=Putative uncharacterized protein;
InterProG2F8D5 
PFAMG2F8D5 
ProdomG2F8D5 
UniProtKBK3I5H9SubName: Full=Uncharacterized protein;
InterProK3I5H9 
PFAMK3I5H9 
ProdomK3I5H9 
UniProtKBI2HZ43SubName: Full=Uncharacterized protein;
InterProI2HZ43 
PFAMI2HZ43 
ProdomI2HZ43 
UniProtKBL3TT66SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL3TT66 
PFAML3TT66 
ProdomL3TT66 
UniProtKBI4TEZ3SubName: Full=Uncharacterized protein;
InterProI4TEZ3 
PFAMI4TEZ3 
ProdomI4TEZ3 
UniProtKBH4W9R7SubName: Full=Phenazine biosynthesis PhzF family protein;
InterProH4W9R7 
PFAMH4W9R7 
ProdomH4W9R7 
UniProtKBL4WQ99SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL4WQ99 
PFAML4WQ99 
ProdomL4WQ99 
UniProtKBS0Y363SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS0Y363 
PFAMS0Y363 
ProdomS0Y363 
UniProtKBP77430RecName: Full=Uncharacterized isomerase YddE;EC=5.1.-.-;AltName: Full=ORFB;
InterProP77430 
PFAMP77430 
ProdomP77430 
UniProtKBN2RHI0SubName: Full=Uncharacterized protein;
InterProN2RHI0 
PFAMN2RHI0 
ProdomN2RHI0 
UniProtKBL3KQY9SubName: Full=PhzF family phenazine biosynthesis protein {ECO:0000313|EMBL:ELE00817.1};
InterProL3KQY9 
PFAML3KQY9 
ProdomL3KQY9 
UniProtKBI2ZQ64SubName: Full=Phenazine biosynthesis protein, PhzF family;
InterProI2ZQ64 
PFAMI2ZQ64 
ProdomI2ZQ64 
UniProtKBT9MAK4SubName: Full=Uncharacterized protein;
InterProT9MAK4 
PFAMT9MAK4 
ProdomT9MAK4 
UniProtKBI2YDN5SubName: Full=Phenazine biosynthesis protein, PhzF family;
InterProI2YDN5 
PFAMI2YDN5 
ProdomI2YDN5 
UniProtKBS1L999SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS1L999 
PFAMS1L999 
ProdomS1L999 
UniProtKBL4P0R5SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL4P0R5 
PFAML4P0R5 
ProdomL4P0R5 
UniProtKBK5H5X5SubName: Full=Uncharacterized protein;
InterProK5H5X5 
PFAMK5H5X5 
ProdomK5H5X5 
UniProtKBL3ZWV1SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL3ZWV1 
PFAML3ZWV1 
ProdomL3ZWV1 
UniProtKBL3VFG9SubName: Full=PhzF family phenazine biosynthesis protein;
InterProL3VFG9 
PFAML3VFG9 
ProdomL3VFG9 
UniProtKBL8C565SubName: Full=Phenazine biosynthesis protein PhzF;
InterProL8C565 
PFAML8C565 
ProdomL8C565 
UniProtKBM7VTI0SubName: Full=Uncharacterized protein;
InterProM7VTI0 
PFAMM7VTI0 
ProdomM7VTI0 
UniProtKBS1AH86SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS1AH86 
PFAMS1AH86 
ProdomS1AH86 
UniProtKBN2KTU2SubName: Full=Uncharacterized protein;
InterProN2KTU2 
PFAMN2KTU2 
ProdomN2KTU2 
UniProtKBS0Z8R5SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS0Z8R5 
PFAMS0Z8R5 
ProdomS0Z8R5 
UniProtKBI2YIR7SubName: Full=Phenazine biosynthesis protein, PhzF family;
InterProI2YIR7 
PFAMI2YIR7 
ProdomI2YIR7 
UniProtKBS0VV56SubName: Full=PhzF family phenazine biosynthesis protein {ECO:0000313|EMBL:EOU67826.1};
InterProS0VV56 
PFAMS0VV56 
ProdomS0VV56 
UniProtKBI2R3L3SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProI2R3L3 
PFAMI2R3L3 
ProdomI2R3L3 
UniProtKBS0UWY1SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS0UWY1 
PFAMS0UWY1 
ProdomS0UWY1 
UniProtKBT9KDC9SubName: Full=Uncharacterized protein;
InterProT9KDC9 
PFAMT9KDC9 
ProdomT9KDC9 
UniProtKBI4JA82SubName: Full=Phenazine biosynthesis protein PhzF family protein {ECO:0000313|EMBL:EIF86141.1};
InterProI4JA82 
PFAMI4JA82 
ProdomI4JA82 
UniProtKBH9USM7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFG40520.1};
InterProH9USM7 
PFAMH9USM7 
ProdomH9USM7 
UniProtKBS1P823SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS1P823 
PFAMS1P823 
ProdomS1P823 
UniProtKBS1K7K1SubName: Full=PhzF family phenazine biosynthesis protein;
InterProS1K7K1 
PFAMS1K7K1 
ProdomS1K7K1 
UniProtKBI0ZRT4SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProI0ZRT4 
PFAMI0ZRT4 
ProdomI0ZRT4 
UniProtKBI2P7S2SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProI2P7S2 
PFAMI2P7S2 
ProdomI2P7S2 
UniProtKBE9WSR1SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProE9WSR1 
PFAME9WSR1 
ProdomE9WSR1 
UniProtKBI2ZQ64SubName: Full=Phenazine biosynthesis protein, PhzF family;
InterProI2ZQ64 
PFAMI2ZQ64 
ProdomI2ZQ64 
UniProtKBF4SIQ1SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProF4SIQ1 
PFAMF4SIQ1 
ProdomF4SIQ1 
UniProtKBF9R5W7SubName: Full=Putative uncharacterized protein;
InterProF9R5W7 
PFAMF9R5W7 
ProdomF9R5W7 
UniProtKBI2R3L3SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProI2R3L3 
PFAMI2R3L3 
ProdomI2R3L3 
UniProtKBG2AUG7SubName: Full=Phenazine biosynthesis protein PhzF family protein;EC=5.1.-.-;
InterProG2AUG7 
PFAMG2AUG7 
ProdomG2AUG7 
UniProtKBG2B946SubName: Full=Phenazine biosynthesis protein PhzF family protein;EC=5.1.-.-;
InterProG2B946 
PFAMG2B946 
ProdomG2B946 
UniProtKBG2F8D5SubName: Full=Putative uncharacterized protein;
InterProG2F8D5 
PFAMG2F8D5 
ProdomG2F8D5 
UniProtKBE1HI73SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProE1HI73 
PFAME1HI73 
ProdomE1HI73 
UniProtKBI2HZ43SubName: Full=Uncharacterized protein;
InterProI2HZ43 
PFAMI2HZ43 
ProdomI2HZ43 
UniProtKBD8BRG3SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProD8BRG3 
PFAMD8BRG3 
ProdomD8BRG3 
UniProtKBA0A1X3JHI1SubName: Full=Phenazine biosynthesis protein PhzF family protein {ECO:0000313|EMBL:OSL11402.1}
InterProA0A1X3JHI1 
PFAMA0A1X3JHI1 
ProdomA0A1X3JHI1 
UniProtKBI4TEZ3SubName: Full=Uncharacterized protein;
InterProI4TEZ3 
PFAMI4TEZ3 
ProdomI4TEZ3 
UniProtKBI2YIR7SubName: Full=Phenazine biosynthesis protein, PhzF family;
InterProI2YIR7 
PFAMI2YIR7 
ProdomI2YIR7 
UniProtKBI2P7S2SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProI2P7S2 
PFAMI2P7S2 
ProdomI2P7S2 
UniProtKBI0ZRT4SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProI0ZRT4 
PFAMI0ZRT4 
ProdomI0ZRT4 
UniProtKBH0QCQ8SubName: Full=Conserved protein;
InterProH0QCQ8 
PFAMH0QCQ8 
ProdomH0QCQ8 
UniProtKBH4VFI1SubName: Full=Uncharacterized protein;
InterProH4VFI1 
PFAMH4VFI1 
ProdomH4VFI1 
UniProtKBB1XE55SubName: Full=Conserved protein;
InterProB1XE55 
PFAMB1XE55 
ProdomB1XE55 
UniProtKBA0A8F9HZG3SubName: Full=PhzF family isomerase {ECO:0000313|EMBL:QYE37316.1}
InterProA0A8F9HZG3 
PFAMA0A8F9HZG3 
ProdomA0A8F9HZG3 
UniProtKBC4ZWN5SubName: Full=Conserved protein;
InterProC4ZWN5 
PFAMC4ZWN5 
ProdomC4ZWN5 
UniProtKBI4JA82SubName: Full=Phenazine biosynthesis protein PhzF family protein;
InterProI4JA82 
PFAMI4JA82 
ProdomI4JA82 
UniProtKBC9QW03SubName: Full=Phenazine biosynthesis protein PhzF family;SubName: Full=Putative uncharacterized protein yddE;
InterProC9QW03 
PFAMC9QW03 
ProdomC9QW03 
UniProtKBI2YDN5SubName: Full=Phenazine biosynthesis protein, PhzF family;
InterProI2YDN5 
PFAMI2YDN5 
ProdomI2YDN5 
UniProtKBA0A0M7PMJ8SubName: Full=Uncharacterized isomerase yddE {ECO:0000313|EMBL:CUK15506.1}EC=5.1.-.- {ECO:0000313|EMBL:CUK15506.1}
InterProA0A0M7PMJ8 
PFAMA0A0M7PMJ8 
ProdomA0A0M7PMJ8