University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P41039
Original Database ID ref NP_415324.1
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation recname: full=uncharacterized
protein ybii;
Sequence Length 88

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-88
Protein Length88
Template PDB Code2kgoA
Template Region21-108
Sequence Identity100%
E-Value0
GA3411
MPQS2.0707
z-DOPE0.2
TSVMod MethodMSALL
TSVMod RMSD5.34
TSVMod NO350.718
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2kgosolution nmr structure of zn finger protein ybil from escherichia coli. nesg target et107, ocsp target ec0402
DBALI2kgoA 
JenaImageLibrary2kgo 
Target Sequence
UniProtKBE9W8J8SubName: Full=Prokaryotic dksA/traR C4-type zinc finger;
InterProE9W8J8 
PFAME9W8J8 
ProdomE9W8J8 
UniProtKBA0A070SMC9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX17964.1};
InterProA0A070SMC9 
PFAMA0A070SMC9 
ProdomA0A070SMC9 
UniProtKBA0A070V285SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX47924.1};
InterProA0A070V285 
PFAMA0A070V285 
ProdomA0A070V285 
UniProtKBA0A071C045SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY90199.1};
InterProA0A071C045 
PFAMA0A071C045 
ProdomA0A071C045 
UniProtKBA0A071CJI9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ18612.1};
InterProA0A071CJI9 
PFAMA0A071CJI9 
ProdomA0A071CJI9 
UniProtKBA0A073GYK5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ70065.1};
InterProA0A073GYK5 
PFAMA0A073GYK5 
ProdomA0A073GYK5 
UniProtKBA0A073TH76SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL27393.1};
InterProA0A073TH76 
PFAMA0A073TH76 
ProdomA0A073TH76 
UniProtKBA0A079DR45SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY22932.1};
InterProA0A079DR45 
PFAMA0A079DR45 
ProdomA0A079DR45 
UniProtKBA0A079FCH0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY54876.1};
InterProA0A079FCH0 
PFAMA0A079FCH0 
ProdomA0A079FCH0 
UniProtKBA0A079H6K8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY98266.1};
InterProA0A079H6K8 
PFAMA0A079H6K8 
ProdomA0A079H6K8 
UniProtKBA0A080EQA4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN51432.1};
InterProA0A080EQA4 
PFAMA0A080EQA4 
ProdomA0A080EQA4 
UniProtKBA0A070DCZ8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDV38846.1};
InterProA0A070DCZ8 
PFAMA0A070DCZ8 
ProdomA0A070DCZ8 
UniProtKBA0A069Z6U8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU55212.1};
InterProA0A069Z6U8 
PFAMA0A069Z6U8 
ProdomA0A069Z6U8 
UniProtKBB1IXG5SubName: Full=Transcriptional regulator, TraR/DksA family;
InterProB1IXG5 
PFAMB1IXG5 
ProdomB1IXG5 
UniProtKBE8Y598SubName: Full=Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:ADX51670.1};
InterProE8Y598 
PFAME8Y598 
ProdomE8Y598 
UniProtKBF4MAM3SubName: Full=Putative uncharacterized protein;
InterProF4MAM3 
PFAMF4MAM3 
ProdomF4MAM3 
UniProtKBF4NPH0SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EGJ08051.1};
InterProF4NPH0 
PFAMF4NPH0 
ProdomF4NPH0 
UniProtKBF4SLI4SubName: Full=Putative C4-type zinc finger protein, DksA/TraR family {ECO:0000313|EMBL:EGI10336.1};
InterProF4SLI4 
PFAMF4SLI4 
ProdomF4SLI4 
UniProtKBE9XWZ0SubName: Full=Prokaryotic dksA/traR C4-type zinc finger;
InterProE9XWZ0 
PFAME9XWZ0 
ProdomE9XWZ0 
UniProtKBG1Y6X3SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein;
InterProG1Y6X3 
PFAMG1Y6X3 
ProdomG1Y6X3 
UniProtKBF9HT20SubName: Full=TraR family phage/conjugal plasmid C-4 type zinc finger protein;SubName: Full=YbiI;
InterProF9HT20 
PFAMF9HT20 
ProdomF9HT20 
UniProtKBG1Z1R0SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein;
InterProG1Z1R0 
PFAMG1Z1R0 
ProdomG1Z1R0 
UniProtKBF9CF05SubName: Full=Putative uncharacterized protein;
InterProF9CF05 
PFAMF9CF05 
ProdomF9CF05 
UniProtKBA7ZY60SubName: Full=C4-type zinc finger protein, DksA/TraR family;
InterProA7ZY60 
PFAMA7ZY60 
ProdomA7ZY60 
UniProtKBA0A080IF24SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO27831.1};
InterProA0A080IF24 
PFAMA0A080IF24 
ProdomA0A080IF24 
UniProtKBA0A0A0FDS7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGM59637.1};
InterProA0A0A0FDS7 
PFAMA0A0A0FDS7 
ProdomA0A0A0FDS7 
UniProtKBD7ZSH8SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFK26153.1};
InterProD7ZSH8 
PFAMD7ZSH8 
ProdomD7ZSH8 
UniProtKBC9R048SubName: Full=Transcriptional regulator, TraR/DksA family;SubName: Full=Uncharacterized protein;
InterProC9R048 
PFAMC9R048 
ProdomC9R048 
UniProtKBB7LC86SubName: Full=YbiI protein {ECO:0000313|EMBL:CAU96713.1};
InterProB7LC86 
PFAMB7LC86 
ProdomB7LC86 
UniProtKBB1X7D3SubName: Full=Conserved protein;
InterProB1X7D3 
PFAMB1X7D3 
ProdomB1X7D3 
UniProtKBE1HP15SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFK90336.1};
InterProE1HP15 
PFAME1HP15 
ProdomE1HP15 
UniProtKBD8EK40SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFK52202.1};
InterProD8EK40 
PFAMD8EK40 
ProdomD8EK40 
UniProtKBE6BDL6SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFU37758.1};
InterProE6BDL6 
PFAME6BDL6 
ProdomE6BDL6 
UniProtKBE6AXQ2SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein {ECO:0000313|EMBL:EFV00323.1};
InterProE6AXQ2 
PFAME6AXQ2 
ProdomE6AXQ2 
UniProtKBE7UNA6SubName: Full=Hypothetical Zinc-finger containing protein;
InterProE7UNA6 
PFAME7UNA6 
ProdomE7UNA6 
UniProtKBE9ULA7SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein;
InterProE9ULA7 
PFAME9ULA7 
ProdomE9ULA7 
UniProtKBD6HUG8SubName: Full=YbiI protein {ECO:0000313|EMBL:EFE63305.2};
InterProD6HUG8 
PFAMD6HUG8 
ProdomD6HUG8 
UniProtKBD7XVG3SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFJ84636.1};
InterProD7XVG3 
PFAMD7XVG3 
ProdomD7XVG3 
UniProtKBB7M778SubName: Full=Uncharacterized protein;
InterProB7M778 
PFAMB7M778 
ProdomB7M778 
UniProtKBA0A0E0TWH5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE55469.1};
InterProA0A0E0TWH5 
PFAMA0A0E0TWH5 
ProdomA0A0E0TWH5 
UniProtKBA0A0E0Y202SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFS75340.1};
InterProA0A0E0Y202 
PFAMA0A0E0Y202 
ProdomA0A0E0Y202 
UniProtKBA0A0G3HUR2SubName: Full=DksA-type zinc finger protein {ECO:0000313|EMBL:AKK17056.1};
InterProA0A0G3HUR2 
PFAMA0A0G3HUR2 
ProdomA0A0G3HUR2 
UniProtKBA0A0H3X6Q1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKM34366.1};
InterProA0A0H3X6Q1 
PFAMA0A0H3X6Q1 
ProdomA0A0H3X6Q1 
UniProtKBA0A0I1R701SubName: Full=DnaK suppressor protein {ECO:0000313|EMBL:CSR60363.1};
InterProA0A0I1R701 
PFAMA0A0I1R701 
ProdomA0A0I1R701 
UniProtKBB3XFR4SubName: Full=C4-type zinc finger protein, DksA/TraR family;
InterProB3XFR4 
PFAMB3XFR4 
ProdomB3XFR4 
UniProtKBB3I7E6SubName: Full=C4-type zinc finger protein, DksA/TraR family;
InterProB3I7E6 
PFAMB3I7E6 
ProdomB3I7E6 
UniProtKBB3HAZ8SubName: Full=Zn Finger Protein Ybil-like protein {ECO:0000313|EMBL:AIF61369.1};
InterProB3HAZ8 
PFAMB3HAZ8 
ProdomB3HAZ8 
UniProtKBC6EIX9SubName: Full=Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:ACT29840.1};
InterProC6EIX9 
PFAMC6EIX9 
ProdomC6EIX9 
UniProtKBC4ZXX5SubName: Full=Conserved protein;
InterProC4ZXX5 
PFAMC4ZXX5 
ProdomC4ZXX5 
UniProtKBE9UME9SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein;
InterProE9UME9 
PFAME9UME9 
ProdomE9UME9 
UniProtKBE9TGA0SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EGB87726.1};
InterProE9TGA0 
PFAME9TGA0 
ProdomE9TGA0 
UniProtKBA0A026UVY0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZA33929.1};
InterProA0A026UVY0 
PFAMA0A026UVY0 
ProdomA0A026UVY0 
UniProtKBG2ARV6SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein;
InterProG2ARV6 
PFAMG2ARV6 
ProdomG2ARV6 
UniProtKBA0A069XD51SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU25373.1};
InterProA0A069XD51 
PFAMA0A069XD51 
ProdomA0A069XD51 
UniProtKBA0A070Y078SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX84531.1};
InterProA0A070Y078 
PFAMA0A070Y078 
ProdomA0A070Y078 
UniProtKBA0A074I0D3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO00902.1};
InterProA0A074I0D3 
PFAMA0A074I0D3 
ProdomA0A074I0D3 
UniProtKBA0A080FFC2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN59127.1};
InterProA0A080FFC2 
PFAMA0A080FFC2 
ProdomA0A080FFC2 
UniProtKBA0A0E2U0F5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZE18201.1};
InterProA0A0E2U0F5 
PFAMA0A0E2U0F5 
ProdomA0A0E2U0F5 
UniProtKBB6I7W0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAG76383.1};
InterProB6I7W0 
PFAMB6I7W0 
ProdomB6I7W0 
UniProtKBC8UL21SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAI34821.1};
InterProC8UL21 
PFAMC8UL21 
ProdomC8UL21 
UniProtKBD8AJ00SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFK16883.1};
InterProD8AJ00 
PFAMD8AJ00 
ProdomD8AJ00 
UniProtKBE2WSN8SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein;
InterProE2WSN8 
PFAME2WSN8 
ProdomE2WSN8 
UniProtKBF8XC09SubName: Full=C4-type zinc finger protein, DksA/TraR family {ECO:0000313|EMBL:EGU97801.1};
InterProF8XC09 
PFAMF8XC09 
ProdomF8XC09 
UniProtKBE9WCG2SubName: Full=Prokaryotic dksA/traR C4-type zinc finger;
InterProE9WCG2 
PFAME9WCG2 
ProdomE9WCG2 
UniProtKBE1J5H5SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFK68818.1};
InterProE1J5H5 
PFAME1J5H5 
ProdomE1J5H5 
UniProtKBA0A027U758SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZD33329.1};
InterProA0A027U758 
PFAMA0A027U758 
ProdomA0A027U758 
UniProtKBE1I344SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFK73248.1};
InterProE1I344 
PFAME1I344 
ProdomE1I344 
UniProtKBA0A029L016SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZJ78630.1};
InterProA0A029L016 
PFAMA0A029L016 
ProdomA0A029L016 
UniProtKBA0A0E1LV17SubName: Full=DksA-type zinc finger protein {ECO:0000313|EMBL:AJF55525.1};
InterProA0A0E1LV17 
PFAMA0A0E1LV17 
ProdomA0A0E1LV17 
UniProtKBE0J4B9SubName: Full=Conserved protein {ECO:0000313|EMBL:ADT74366.1};SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFH10499.1};
InterProE0J4B9 
PFAME0J4B9 
ProdomE0J4B9 
UniProtKBE9YEJ0SubName: Full=Prokaryotic dksA/traR C4-type zinc finger {ECO:0000313|EMBL:EGB67189.1};
InterProE9YEJ0 
PFAME9YEJ0 
ProdomE9YEJ0 
UniProtKBA0A029N1E3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZK03242.1};
InterProA0A029N1E3 
PFAMA0A029N1E3 
ProdomA0A029N1E3 
UniProtKBA0A073VU54SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL83621.1};
InterProA0A073VU54 
PFAMA0A073VU54 
ProdomA0A073VU54 
UniProtKBA0A0E1T2Q9SubName: Full=C4-type zinc finger protein, DksA/TraR family {ECO:0000313|EMBL:EDU63722.1};
InterProA0A0E1T2Q9 
PFAMA0A0E1T2Q9 
ProdomA0A0E1T2Q9 
UniProtKBC8U476SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAI29690.1};
InterProC8U476 
PFAMC8U476 
ProdomC8U476 
UniProtKBE3PI33SubName: Full=Putative zinc ion binding protein {ECO:0000313|EMBL:CBJ00379.1};
InterProE3PI33 
PFAME3PI33 
ProdomE3PI33 
UniProtKBE9WQT7SubName: Full=Prokaryotic dksA/traR C4-type zinc finger;
InterProE9WQT7 
PFAME9WQT7 
ProdomE9WQT7 
UniProtKBA0A0E2U8S3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYV13062.1};
InterProA0A0E2U8S3 
PFAMA0A0E2U8S3 
ProdomA0A0E2U8S3 
UniProtKBA0A0H4RVP4SubName: Full=Chain A {ECO:0000313|EMBL:AKP83511.1};
InterProA0A0H4RVP4 
PFAMA0A0H4RVP4 
ProdomA0A0H4RVP4 
UniProtKBB3IL40SubName: Full=C4-type zinc finger protein, DksA/TraR family;
InterProB3IL40 
PFAMB3IL40 
ProdomB3IL40 
UniProtKBC5W1Q3SubName: Full=Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:ACT29840.1};
InterProC5W1Q3 
PFAMC5W1Q3 
ProdomC5W1Q3 
UniProtKBC6UDW6SubName: Full=Putative uncharacterized protein ybiI;
InterProC6UDW6 
PFAMC6UDW6 
ProdomC6UDW6 
UniProtKBD7Y802SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFJ96227.1};
InterProD7Y802 
PFAMD7Y802 
ProdomD7Y802 
UniProtKBD7YEV6SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFK04170.1};
InterProD7YEV6 
PFAMD7YEV6 
ProdomD7YEV6 
UniProtKBB2N6W1SubName: Full=C4-type zinc finger protein, DksA/TraR family;
InterProB2N6W1 
PFAMB2N6W1 
ProdomB2N6W1 
UniProtKBE1IYF8SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFO55624.1};
InterProE1IYF8 
PFAME1IYF8 
ProdomE1IYF8 
UniProtKBE7J3H5SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein;
InterProE7J3H5 
PFAME7J3H5 
ProdomE7J3H5 
UniProtKBA0A0A8U529SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CEK03888.1};
InterProA0A0A8U529 
PFAMA0A0A8U529 
ProdomA0A0A8U529 
UniProtKBA0A080H0L8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN91911.1};
InterProA0A080H0L8 
PFAMA0A080H0L8 
ProdomA0A080H0L8 
UniProtKBA0A079G068SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY67933.1};
InterProA0A079G068 
PFAMA0A079G068 
ProdomA0A079G068 
UniProtKBD8B4H8SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFJ66004.1};
InterProD8B4H8 
PFAMD8B4H8 
ProdomD8B4H8 
UniProtKBF8YDH2SubName: Full=Putative uncharacterized protein;
InterProF8YDH2 
PFAMF8YDH2 
ProdomF8YDH2 
UniProtKBG0F351SubName: Full=Prokaryotic dksA/traR C4-type zinc finger family protein {ECO:0000313|EMBL:AEJ55475.1};
InterProG0F351 
PFAMG0F351 
ProdomG0F351 
UniProtKBE9X5Z5SubName: Full=Prokaryotic dksA/traR C4-type zinc finger;
InterProE9X5Z5 
PFAME9X5Z5 
ProdomE9X5Z5 
UniProtKBA0A069XQH1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU32085.1};
InterProA0A069XQH1 
PFAMA0A069XQH1 
ProdomA0A069XQH1 
UniProtKBA0A070F3Q5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDV59767.1};
InterProA0A070F3Q5 
PFAMA0A070F3Q5 
ProdomA0A070F3Q5 
UniProtKBA0A071APU7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY64415.1};
InterProA0A071APU7 
PFAMA0A071APU7 
ProdomA0A071APU7 
UniProtKBA0A071DNF4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ38110.1};
InterProA0A071DNF4 
PFAMA0A071DNF4 
ProdomA0A071DNF4 
UniProtKBA0A074IKQ1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO13704.1};
InterProA0A074IKQ1 
PFAMA0A074IKQ1 
ProdomA0A074IKQ1 
UniProtKBD8BXQ8SubName: Full=Phage/conjugal plasmid C-4 type zinc finger protein, TraR family {ECO:0000313|EMBL:EFI88559.1};
InterProD8BXQ8 
PFAMD8BXQ8 
ProdomD8BXQ8