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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P45736.1
Original Database ID ref NP_415805.1
Organism Escherichia coli, Shigella sonnei, etc.
Annotation ycjd_ecoli recname: full=uncharacterized
protein ycjd
Sequence Length 117

Dataset Information:

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Model Information

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Target Region16-113
Protein Length117
Template PDB Code3hrlA
Template Region26-123
Sequence Identity48%
E-Value0
GA3411
MPQS1.48221
z-DOPE-1.63
TSVMod MethodMSALL
TSVMod RMSD2.004
TSVMod NO350.89
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3hrlcrystal structure of a putative endonuclease-like protein (ngo0050) from neisseria gonorrhoeae
DBALI3hrlA 
JenaImageLibrary3hrl 
Target Sequence
UniProtKBT8TG90SubName: Full=Uncharacterized protein;
InterProT8TG90 
PFAMT8TG90 
ProdomT8TG90 
UniProtKBA0A071BV28SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY86792.1};
InterProA0A071BV28 
PFAMA0A071BV28 
ProdomA0A071BV28 
UniProtKBA0A071CAQ0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ16137.1};
InterProA0A071CAQ0 
PFAMA0A071CAQ0 
ProdomA0A071CAQ0 
UniProtKBA0A071DQS3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ38910.1};
InterProA0A071DQS3 
PFAMA0A071DQS3 
ProdomA0A071DQS3 
UniProtKBA0A073GVZ5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ69339.1};
InterProA0A073GVZ5 
PFAMA0A073GVZ5 
ProdomA0A073GVZ5 
UniProtKBA0A073TDS3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL25128.1};
InterProA0A073TDS3 
PFAMA0A073TDS3 
ProdomA0A073TDS3 
UniProtKBA0A079G1T8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY66583.1};
InterProA0A079G1T8 
PFAMA0A079G1T8 
ProdomA0A079G1T8 
UniProtKBA0A079GUC3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY95914.1};
InterProA0A079GUC3 
PFAMA0A079GUC3 
ProdomA0A079GUC3 
UniProtKBA0A080GYM3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN91146.1};
InterProA0A080GYM3 
PFAMA0A080GYM3 
ProdomA0A080GYM3 
UniProtKBA0A080IEC2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO26100.1};
InterProA0A080IEC2 
PFAMA0A080IEC2 
ProdomA0A080IEC2 
UniProtKBA0A090J703SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KLX64691.1};
InterProA0A090J703 
PFAMA0A090J703 
ProdomA0A090J703 
UniProtKBA0A071ALU2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY62870.1};
InterProA0A071ALU2 
PFAMA0A071ALU2 
ProdomA0A071ALU2 
UniProtKBA0A070SQ79SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX19520.1};
InterProA0A070SQ79 
PFAMA0A070SQ79 
ProdomA0A070SQ79 
UniProtKBF4SHB3SubName: Full=DNA (Cytosine-5-)-methyltransferase {ECO:0000313|EMBL:EGI10871.1};
InterProF4SHB3 
PFAMF4SHB3 
ProdomF4SHB3 
UniProtKBS1KXP6SubName: Full=Uncharacterized protein;
InterProS1KXP6 
PFAMS1KXP6 
ProdomS1KXP6 
UniProtKBG0FDW4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEJ56295.1};
InterProG0FDW4 
PFAMG0FDW4 
ProdomG0FDW4 
UniProtKBG2B8U0SubName: Full=Putative uncharacterized protein;
InterProG2B8U0 
PFAMG2B8U0 
ProdomG2B8U0 
UniProtKBV1A4J3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESD99149.1};
InterProV1A4J3 
PFAMV1A4J3 
ProdomV1A4J3 
UniProtKBG2F1L5SubName: Full=Putative uncharacterized protein;
InterProG2F1L5 
PFAMG2F1L5 
ProdomG2F1L5 
UniProtKBV0B064SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ESA99545.1};
InterProV0B064 
PFAMV0B064 
ProdomV0B064 
UniProtKBH4UIG1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EHV59361.1};
InterProH4UIG1 
PFAMH4UIG1 
ProdomH4UIG1 
UniProtKBA0A069XKF5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU30611.1};
InterProA0A069XKF5 
PFAMA0A069XKF5 
ProdomA0A069XKF5 
UniProtKBA0A069YZH7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU52605.1};
InterProA0A069YZH7 
PFAMA0A069YZH7 
ProdomA0A069YZH7 
UniProtKBA0A0A0F9E8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGM59075.1};
InterProA0A0A0F9E8 
PFAMA0A0A0F9E8 
ProdomA0A0A0F9E8 
UniProtKBA0A0E1LWW1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AJF56162.1};
InterProA0A0E1LWW1 
PFAMA0A0E1LWW1 
ProdomA0A0E1LWW1 
UniProtKBA0A0E3MVL7SubName: Full=Uncharacterized protein YcjD {ECO:0000313|EMBL:AKA90363.1};
InterProA0A0E3MVL7 
PFAMA0A0E3MVL7 
ProdomA0A0E3MVL7 
UniProtKBM8P102SubName: Full=Uncharacterized protein;
InterProM8P102 
PFAMM8P102 
ProdomM8P102 
UniProtKBM8VGU0SubName: Full=Uncharacterized protein;
InterProM8VGU0 
PFAMM8VGU0 
ProdomM8VGU0 
UniProtKBM8YYW1SubName: Full=Uncharacterized protein;
InterProM8YYW1 
PFAMM8YYW1 
ProdomM8YYW1 
UniProtKBM9CDM7SubName: Full=Uncharacterized protein;
InterProM9CDM7 
PFAMM9CDM7 
ProdomM9CDM7 
UniProtKBM9DYK4SubName: Full=Uncharacterized protein;
InterProM9DYK4 
PFAMM9DYK4 
ProdomM9DYK4 
UniProtKBN2G8A8SubName: Full=Uncharacterized protein;
InterProN2G8A8 
PFAMN2G8A8 
ProdomN2G8A8 
UniProtKBN2GU39SubName: Full=Uncharacterized protein;
InterProN2GU39 
PFAMN2GU39 
ProdomN2GU39 
UniProtKBN2I8I8SubName: Full=Uncharacterized protein;
InterProN2I8I8 
PFAMN2I8I8 
ProdomN2I8I8 
UniProtKBN2KV58SubName: Full=Uncharacterized protein;
InterProN2KV58 
PFAMN2KV58 
ProdomN2KV58 
UniProtKBP71233RecName: Full=Uncharacterized protein YcjD;
InterProP71233 
PFAMP71233 
ProdomP71233 
UniProtKBM8NV14SubName: Full=Uncharacterized protein;
InterProM8NV14 
PFAMM8NV14 
ProdomM8NV14 
UniProtKBM8MSU6SubName: Full=Uncharacterized protein;
InterProM8MSU6 
PFAMM8MSU6 
ProdomM8MSU6 
UniProtKBA0A0H3X7A1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKM34848.1};
InterProA0A0H3X7A1 
PFAMA0A0H3X7A1 
ProdomA0A0H3X7A1 
UniProtKBK3I4Z9SubName: Full=DNA (Cytosine-5-)-methyltransferase;
InterProK3I4Z9 
PFAMK3I4Z9 
ProdomK3I4Z9 
UniProtKBK3KJF9SubName: Full=DNA (Cytosine-5-)-methyltransferase;
InterProK3KJF9 
PFAMK3KJF9 
ProdomK3KJF9 
UniProtKBK5H544SubName: Full=DNA (Cytosine-5-)-methyltransferase;
InterProK5H544 
PFAMK5H544 
ProdomK5H544 
UniProtKBK5HXT9SubName: Full=Uncharacterized protein;
InterProK5HXT9 
PFAMK5HXT9 
ProdomK5HXT9 
UniProtKBL3KRX6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ELE01595.1};
InterProL3KRX6 
PFAML3KRX6 
ProdomL3KRX6 
UniProtKBL8C5J4SubName: Full=Uncharacterized protein;
InterProL8C5J4 
PFAML8C5J4 
ProdomL8C5J4 
UniProtKBM8LHH5SubName: Full=Uncharacterized protein;
InterProM8LHH5 
PFAMM8LHH5 
ProdomM8LHH5 
UniProtKBM8LXT5SubName: Full=Uncharacterized protein;
InterProM8LXT5 
PFAMM8LXT5 
ProdomM8LXT5 
UniProtKBM8M5S5SubName: Full=Uncharacterized protein;
InterProM8M5S5 
PFAMM8M5S5 
ProdomM8M5S5 
UniProtKBS1FCY5SubName: Full=Uncharacterized protein;
InterProS1FCY5 
PFAMS1FCY5 
ProdomS1FCY5 
UniProtKBE9XYF0SubName: Full=Putative uncharacterized protein;
InterProE9XYF0 
PFAME9XYF0 
ProdomE9XYF0 
UniProtKBH4X420SubName: Full=Uncharacterized protein;
InterProH4X420 
PFAMH4X420 
ProdomH4X420 
UniProtKBI2XA81SubName: Full=PF04480 family protein {ECO:0000313|EMBL:EII45901.1};
InterProI2XA81 
PFAMI2XA81 
ProdomI2XA81 
UniProtKBB3XC16SubName: Full=Putative uncharacterized protein;
InterProB3XC16 
PFAMB3XC16 
ProdomB3XC16 
UniProtKBC5W3A6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT29355.1};
InterProC5W3A6 
PFAMC5W3A6 
ProdomC5W3A6 
UniProtKBH4VVD3SubName: Full=Uncharacterized protein;
InterProH4VVD3 
PFAMH4VVD3 
ProdomH4VVD3 
UniProtKBM2N376SubName: Full=Uncharacterized protein;
InterProM2N376 
PFAMM2N376 
ProdomM2N376 
UniProtKBD8AM95SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK15724.1};
InterProD8AM95 
PFAMD8AM95 
ProdomD8AM95 
UniProtKBD8BVI8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFI89332.1};
InterProD8BVI8 
PFAMD8BVI8 
ProdomD8BVI8 
UniProtKBI4TLC8SubName: Full=Uncharacterized protein;
InterProI4TLC8 
PFAMI4TLC8 
ProdomI4TLC8 
UniProtKBE9WDX6SubName: Full=Putative uncharacterized protein;
InterProE9WDX6 
PFAME9WDX6 
ProdomE9WDX6 
UniProtKBU0CG26SubName: Full=Uncharacterized protein;
InterProU0CG26 
PFAMU0CG26 
ProdomU0CG26 
UniProtKBG2AU16SubName: Full=Putative uncharacterized protein;
InterProG2AU16 
PFAMG2AU16 
ProdomG2AU16 
UniProtKBE9YA46SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGB68654.1};
InterProE9YA46 
PFAME9YA46 
ProdomE9YA46 
UniProtKBP45736RecName: Full=Uncharacterized protein YcjD;
InterProP45736 
PFAMP45736 
ProdomP45736 
UniProtKBH4UZM4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EHV61176.1};
InterProH4UZM4 
PFAMH4UZM4 
ProdomH4UZM4 
UniProtKBE6AYV3SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFU99916.1};
InterProE6AYV3 
PFAME6AYV3 
ProdomE6AYV3 
UniProtKBI2I412SubName: Full=Uncharacterized protein;
InterProI2I412 
PFAMI2I412 
ProdomI2I412 
UniProtKBC9QXQ9SubName: Full=Conserved protein;
InterProC9QXQ9 
PFAMC9QXQ9 
ProdomC9QXQ9 
UniProtKBM9HDB8SubName: Full=Uncharacterized protein;
InterProM9HDB8 
PFAMM9HDB8 
ProdomM9HDB8 
UniProtKBW1BX70SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDK84180.1};
InterProW1BX70 
PFAMW1BX70 
ProdomW1BX70 
UniProtKBB1ITG4SubName: Full=Putative uncharacterized protein;
InterProB1ITG4 
PFAMB1ITG4 
ProdomB1ITG4 
UniProtKBI2ZWP5SubName: Full=PF04480 family protein;
InterProI2ZWP5 
PFAMI2ZWP5 
ProdomI2ZWP5 
UniProtKBD7Y6G9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ96741.1};
InterProD7Y6G9 
PFAMD7Y6G9 
ProdomD7Y6G9 
UniProtKBM8QGX8SubName: Full=Uncharacterized protein;
InterProM8QGX8 
PFAMM8QGX8 
ProdomM8QGX8 
UniProtKBU0D317SubName: Full=Uncharacterized protein;
InterProU0D317 
PFAMU0D317 
ProdomU0D317 
UniProtKBF9QXN5SubName: Full=Putative uncharacterized protein;
InterProF9QXN5 
PFAMF9QXN5 
ProdomF9QXN5 
UniProtKBK3LNA7SubName: Full=DNA (Cytosine-5-)-methyltransferase {ECO:0000313|EMBL:EKI53754.1};
InterProK3LNA7 
PFAMK3LNA7 
ProdomK3LNA7 
UniProtKBD7ZN77SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK27580.1};
InterProD7ZN77 
PFAMD7ZN77 
ProdomD7ZN77 
UniProtKBI4UG67SubName: Full=Uncharacterized protein;
InterProI4UG67 
PFAMI4UG67 
ProdomI4UG67 
UniProtKBM8NFF6SubName: Full=Uncharacterized protein;
InterProM8NFF6 
PFAMM8NFF6 
ProdomM8NFF6 
UniProtKBD8AY13SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ68233.1};
InterProD8AY13 
PFAMD8AY13 
ProdomD8AY13 
UniProtKBM8P988SubName: Full=Uncharacterized protein;
InterProM8P988 
PFAMM8P988 
ProdomM8P988 
UniProtKBE1HRL8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK89444.1};
InterProE1HRL8 
PFAME1HRL8 
ProdomE1HRL8 
UniProtKBE3PL49SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CBJ00896.1};
InterProE3PL49 
PFAME3PL49 
ProdomE3PL49 
UniProtKBN1SHX5SubName: Full=Uncharacterized protein;
InterProN1SHX5 
PFAMN1SHX5 
ProdomN1SHX5 
UniProtKBN2R4A0SubName: Full=Uncharacterized protein;
InterProN2R4A0 
PFAMN2R4A0 
ProdomN2R4A0 
UniProtKBC6UGT7SubName: Full=Putative uncharacterized protein ycjD;
InterProC6UGT7 
PFAMC6UGT7 
ProdomC6UGT7 
UniProtKBE9WS56SubName: Full=Putative uncharacterized protein;
InterProE9WS56 
PFAME9WS56 
ProdomE9WS56 
UniProtKBG2CJX8SubName: Full=Putative uncharacterized protein;
InterProG2CJX8 
PFAMG2CJX8 
ProdomG2CJX8 
UniProtKBH0QA56SubName: Full=Conserved protein;
InterProH0QA56 
PFAMH0QA56 
ProdomH0QA56 
UniProtKBH4VF18SubName: Full=Uncharacterized protein;
InterProH4VF18 
PFAMH4VF18 
ProdomH4VF18 
UniProtKBB1XBP0SubName: Full=Conserved protein;
InterProB1XBP0 
PFAMB1XBP0 
ProdomB1XBP0 
UniProtKBH4WA60SubName: Full=Uncharacterized protein;
InterProH4WA60 
PFAMH4WA60 
ProdomH4WA60 
UniProtKBI2Y0P6SubName: Full=PF04480 family protein;
InterProI2Y0P6 
PFAMI2Y0P6 
ProdomI2Y0P6 
UniProtKBC4ZTY5SubName: Full=Conserved protein;
InterProC4ZTY5 
PFAMC4ZTY5 
ProdomC4ZTY5 
UniProtKBI2YHS7SubName: Full=PF04480 family protein;
InterProI2YHS7 
PFAMI2YHS7 
ProdomI2YHS7 
UniProtKBC6EFU3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT29355.1};
InterProC6EFU3 
PFAMC6EFU3 
ProdomC6EFU3 
UniProtKBG2F1L5SubName: Full=Putative uncharacterized protein;
InterProG2F1L5 
PFAMG2F1L5 
ProdomG2F1L5 
UniProtKBG2B8U0SubName: Full=Putative uncharacterized protein;
InterProG2B8U0 
PFAMG2B8U0 
ProdomG2B8U0 
UniProtKBH0QA56SubName: Full=Conserved protein;
InterProH0QA56 
PFAMH0QA56 
ProdomH0QA56