University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P45750.3
Original Database ID ref NP_417851.4
Organism Escherichia coli, Escherichia fergusonii, etc.
Annotation hofp_ecoli recname: full=putative
dna utilization protein hofp
Sequence Length 134

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region21-86
Protein Length134
Template PDB Code2ivwA
Template Region79-143
Sequence Identity28%
E-Value0
GA3410.68
MPQS0.791337
z-DOPE-0.13
TSVMod MethodMSALL
TSVMod RMSD4.292
TSVMod NO350.67
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2ivwthe solution structure of a domain from the neisseria meningitidis pilp pilot protein.
DBALI2ivwA 
JenaImageLibrary2ivw 
Target Sequence
UniProtKBG5UXM2SubName: Full=Putative DNA transporter HofQ;
InterProG5UXM2 
PFAMG5UXM2 
ProdomG5UXM2 
UniProtKBA0A070UUQ4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX46082.1};
InterProA0A070UUQ4 
PFAMA0A070UUQ4 
ProdomA0A070UUQ4 
UniProtKBA0A070YBK7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX88511.1};
InterProA0A070YBK7 
PFAMA0A070YBK7 
ProdomA0A070YBK7 
UniProtKBA0A071CL89SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ19729.1};
InterProA0A071CL89 
PFAMA0A071CL89 
ProdomA0A071CL89 
UniProtKBA0A071DHB7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ40518.1};
InterProA0A071DHB7 
PFAMA0A071DHB7 
ProdomA0A071DHB7 
UniProtKBA0A073TCK3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL25443.1};
InterProA0A073TCK3 
PFAMA0A073TCK3 
ProdomA0A073TCK3 
UniProtKBA0A074HLC7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN95088.1};
InterProA0A074HLC7 
PFAMA0A074HLC7 
ProdomA0A074HLC7 
UniProtKBA0A079G2A6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY68661.1};
InterProA0A079G2A6 
PFAMA0A079G2A6 
ProdomA0A079G2A6 
UniProtKBA0A079H4Z2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY98538.1};
InterProA0A079H4Z2 
PFAMA0A079H4Z2 
ProdomA0A079H4Z2 
UniProtKBA0A080F3D2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN52504.1};
InterProA0A080F3D2 
PFAMA0A080F3D2 
ProdomA0A080F3D2 
UniProtKBA0A080GGT7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN87336.1};
InterProA0A080GGT7 
PFAMA0A080GGT7 
ProdomA0A080GGT7 
UniProtKBA0A070D909SubName: Full=DNA utilization protein HofP {ECO:0000313|EMBL:KDV36987.1};
InterProA0A070D909 
PFAMA0A070D909 
ProdomA0A070D909 
UniProtKBA0A069Z2L2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU53182.1};
InterProA0A069Z2L2 
PFAMA0A069Z2L2 
ProdomA0A069Z2L2 
UniProtKBB3BCA8SubName: Full=Putative uncharacterized protein;
InterProB3BCA8 
PFAMB3BCA8 
ProdomB3BCA8 
UniProtKBG2F4A6SubName: Full=Putative uncharacterized protein;
InterProG2F4A6 
PFAMG2F4A6 
ProdomG2F4A6 
UniProtKBG5XIS5SubName: Full=Putative DNA transporter HofQ;
InterProG5XIS5 
PFAMG5XIS5 
ProdomG5XIS5 
UniProtKBG5Y2J3SubName: Full=Putative DNA transporter HofQ;
InterProG5Y2J3 
PFAMG5Y2J3 
ProdomG5Y2J3 
UniProtKBG5Y8N6SubName: Full=Putative DNA transporter HofQ;
InterProG5Y8N6 
PFAMG5Y8N6 
ProdomG5Y8N6 
UniProtKBG5WJR6SubName: Full=Putative DNA transporter HofQ;
InterProG5WJR6 
PFAMG5WJR6 
ProdomG5WJR6 
UniProtKBB3HFX6SubName: Full=Type IV pilus biogenesis protein PilP {ECO:0000313|EMBL:AIF63360.1};
InterProB3HFX6 
PFAMB3HFX6 
ProdomB3HFX6 
UniProtKBH4PAZ0SubName: Full=DNA carbon source utilization protein;
InterProH4PAZ0 
PFAMH4PAZ0 
ProdomH4PAZ0 
UniProtKBB2N8Y9SubName: Full=Putative uncharacterized protein;
InterProB2N8Y9 
PFAMB2N8Y9 
ProdomB2N8Y9 
UniProtKBH4FIY9SubName: Full=Uncharacterized protein;
InterProH4FIY9 
PFAMH4FIY9 
ProdomH4FIY9 
UniProtKBG5WBL3SubName: Full=Putative DNA transporter HofQ;
InterProG5WBL3 
PFAMG5WBL3 
ProdomG5WBL3 
UniProtKBA0A0E0U506SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE58677.1};
InterProA0A0E0U506 
PFAMA0A0E0U506 
ProdomA0A0E0U506 
UniProtKBA0A0E0XWL6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFS72351.1};
InterProA0A0E0XWL6 
PFAMA0A0E0XWL6 
ProdomA0A0E0XWL6 
UniProtKBE9XDL9SubName: Full=Protein transporter hofQ;
InterProE9XDL9 
PFAME9XDL9 
ProdomE9XDL9 
UniProtKBE7T959SubName: Full=Type IV pilus biogenesis protein PilP {ECO:0000313|EMBL:EFW61463.1};
InterProE7T959 
PFAME7T959 
ProdomE7T959 
UniProtKBE1I6S8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK71966.1};
InterProE1I6S8 
PFAME1I6S8 
ProdomE1I6S8 
UniProtKBB3IJD3SubName: Full=Putative uncharacterized protein;
InterProB3IJD3 
PFAMB3IJD3 
ProdomB3IJD3 
UniProtKBF9I0D3SubName: Full=Putative DNA transporter HofQ;SubName: Full=Uncharacterized protein;
InterProF9I0D3 
PFAMF9I0D3 
ProdomF9I0D3 
UniProtKBF8YKU6SubName: Full=Putative uncharacterized protein;
InterProF8YKU6 
PFAMF8YKU6 
ProdomF8YKU6 
UniProtKBG2CA44SubName: Full=Putative uncharacterized protein;
InterProG2CA44 
PFAMG2CA44 
ProdomG2CA44 
UniProtKBG2BEU0SubName: Full=Putative uncharacterized protein;
InterProG2BEU0 
PFAMG2BEU0 
ProdomG2BEU0 
UniProtKBG2D4W4SubName: Full=Putative uncharacterized protein;
InterProG2D4W4 
PFAMG2D4W4 
ProdomG2D4W4 
UniProtKBG5U3K4SubName: Full=Putative DNA transporter HofQ;
InterProG5U3K4 
PFAMG5U3K4 
ProdomG5U3K4 
UniProtKBE7ULR6SubName: Full=Type IV pilus biogenesis protein PilP;
InterProE7ULR6 
PFAME7ULR6 
ProdomE7ULR6 
UniProtKBE8YDS7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ADX49011.1};
InterProE8YDS7 
PFAME8YDS7 
ProdomE8YDS7 
UniProtKBE1INX9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFO58969.1};
InterProE1INX9 
PFAME1INX9 
ProdomE1INX9 
UniProtKBA0A0E1STH2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDU62850.1};
InterProA0A0E1STH2 
PFAMA0A0E1STH2 
ProdomA0A0E1STH2 
UniProtKBA0A0E3H454SubName: Full=Putative DNA utilization protein HofP {ECO:0000313|EMBL:AKA92571.1};
InterProA0A0E3H454 
PFAMA0A0E3H454 
ProdomA0A0E3H454 
UniProtKBC9QWP1SubName: Full=Uncharacterized protein;Flags: Precursor;
InterProC9QWP1 
PFAMC9QWP1 
ProdomC9QWP1 
UniProtKBD8AIC8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK17097.1};
InterProD8AIC8 
PFAMD8AIC8 
ProdomD8AIC8 
UniProtKBD7YQN0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK00392.1};
InterProD7YQN0 
PFAMD7YQN0 
ProdomD7YQN0 
UniProtKBD8E875SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK45650.1};
InterProD8E875 
PFAMD8E875 
ProdomD8E875 
UniProtKBD7Y634SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ96896.1};
InterProD7Y634 
PFAMD7Y634 
ProdomD7Y634 
UniProtKBC4ZUP7SubName: Full=Predicted protein;
InterProC4ZUP7 
PFAMC4ZUP7 
ProdomC4ZUP7 
UniProtKBE6BIE5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFU35948.1};
InterProE6BIE5 
PFAME6BIE5 
ProdomE6BIE5 
UniProtKBE1J1U4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK70191.1};
InterProE1J1U4 
PFAME1J1U4 
ProdomE1J1U4 
UniProtKBG5UDV9SubName: Full=Putative DNA transporter HofQ;
InterProG5UDV9 
PFAMG5UDV9 
ProdomG5UDV9 
UniProtKBG5TPD8SubName: Full=Putative DNA transporter HofQ;
InterProG5TPD8 
PFAMG5TPD8 
ProdomG5TPD8 
UniProtKBA0A023Z3X7SubName: Full=Type IV pilus biogenesis protein PilP {ECO:0000313|EMBL:AHY72806.1};
InterProA0A023Z3X7 
PFAMA0A023Z3X7 
ProdomA0A023Z3X7 
UniProtKBB1X739SubName: Full=Predicted protein;
InterProB1X739 
PFAMB1X739 
ProdomB1X739 
UniProtKBA0A029PCC4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZK19307.1};
InterProA0A029PCC4 
PFAMA0A029PCC4 
ProdomA0A029PCC4 
UniProtKBA0A071AR11SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY65784.1};
InterProA0A071AR11 
PFAMA0A071AR11 
ProdomA0A071AR11 
UniProtKBA0A079DRQ9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY23158.1};
InterProA0A079DRQ9 
PFAMA0A079DRQ9 
ProdomA0A079DRQ9 
UniProtKBA0A080IIH0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO28582.1};
InterProA0A080IIH0 
PFAMA0A080IIH0 
ProdomA0A080IIH0 
UniProtKBA0A0H3PTD5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDU92731.1};
InterProA0A0H3PTD5 
PFAMA0A0H3PTD5 
ProdomA0A0H3PTD5 
UniProtKBE0IZY3SubName: Full=Inner membrane protein {ECO:0000313|EMBL:ADT76996.1};SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFH13206.1};
InterProE0IZY3 
PFAME0IZY3 
ProdomE0IZY3 
UniProtKBE7SI32SubName: Full=Type IV pilus biogenesis protein PilP {ECO:0000313|EMBL:EFW50843.1};
InterProE7SI32 
PFAME7SI32 
ProdomE7SI32 
UniProtKBF3W341SubName: Full=Putative uncharacterized protein;
InterProF3W341 
PFAMF3W341 
ProdomF3W341 
UniProtKBG2A5A8SubName: Full=Putative uncharacterized protein;
InterProG2A5A8 
PFAMG2A5A8 
ProdomG2A5A8 
UniProtKBH0Q7D4SubName: Full=Uncharacterized protein;
InterProH0Q7D4 
PFAMH0Q7D4 
ProdomH0Q7D4 
UniProtKBG5VF53SubName: Full=Putative DNA transporter HofQ;
InterProG5VF53 
PFAMG5VF53 
ProdomG5VF53 
UniProtKBG1ZPU0SubName: Full=Putative uncharacterized protein;
InterProG1ZPU0 
PFAMG1ZPU0 
ProdomG1ZPU0 
UniProtKBA0A025CV15SubName: Full=DNA utilization protein HofP {ECO:0000313|EMBL:EYV17455.1};
InterProA0A025CV15 
PFAMA0A025CV15 
ProdomA0A025CV15 
UniProtKBF9QZR9SubName: Full=Putative uncharacterized protein;
InterProF9QZR9 
PFAMF9QZR9 
ProdomF9QZR9 
UniProtKBA0A027YX99SubName: Full=DNA utilization protein HofP {ECO:0000313|EMBL:EZD91320.1};
InterProA0A027YX99 
PFAMA0A027YX99 
ProdomA0A027YX99 
UniProtKBA0A0G2XJ72SubName: Full=DNA utilization protein HofP {ECO:0000313|EMBL:AKI68379.1};
InterProA0A0G2XJ72 
PFAMA0A0G2XJ72 
ProdomA0A0G2XJ72 
UniProtKBF9CMQ9SubName: Full=Putative uncharacterized protein;
InterProF9CMQ9 
PFAMF9CMQ9 
ProdomF9CMQ9 
UniProtKBG5WZV3SubName: Full=Putative DNA transporter HofQ;
InterProG5WZV3 
PFAMG5WZV3 
ProdomG5WZV3 
UniProtKBA0A029LBC7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZJ82835.1};
InterProA0A029LBC7 
PFAMA0A029LBC7 
ProdomA0A029LBC7 
UniProtKBA0A074IF96SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO07020.1};
InterProA0A074IF96 
PFAMA0A074IF96 
ProdomA0A074IF96 
UniProtKBA0A0G3I0L7SubName: Full=Protein required for the utilization of DNA as a carbon source protein {ECO:0000313|EMBL:AKK19121.1};
InterProA0A0G3I0L7 
PFAMA0A0G3I0L7 
ProdomA0A0G3I0L7 
UniProtKBE7JLQ2SubName: Full=Putative uncharacterized protein;
InterProE7JLQ2 
PFAME7JLQ2 
ProdomE7JLQ2 
UniProtKBG2B0N0SubName: Full=Putative uncharacterized protein;
InterProG2B0N0 
PFAMG2B0N0 
ProdomG2B0N0 
UniProtKBG5VUZ2SubName: Full=Putative DNA transporter HofQ;
InterProG5VUZ2 
PFAMG5VUZ2 
ProdomG5VUZ2 
UniProtKBD7XWC9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ84343.1};
InterProD7XWC9 
PFAMD7XWC9 
ProdomD7XWC9 
UniProtKBD8B3R7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ66258.1};
InterProD8B3R7 
PFAMD8B3R7 
ProdomD8B3R7 
UniProtKBD8BVY9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFI89181.1};
InterProD8BVY9 
PFAMD8BVY9 
ProdomD8BVY9 
UniProtKBE2X8Z0SubName: Full=Putative uncharacterized protein {ECO:0000313|EMBL:EFP72464.1};
InterProE2X8Z0 
PFAME2X8Z0 
ProdomE2X8Z0 
UniProtKBE7I6S4SubName: Full=Putative uncharacterized protein;
InterProE7I6S4 
PFAME7I6S4 
ProdomE7I6S4 
UniProtKBE9TFP3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGB87923.1};
InterProE9TFP3 
PFAME9TFP3 
ProdomE9TFP3 
UniProtKBE9X0N2SubName: Full=Protein transporter hofQ;
InterProE9X0N2 
PFAME9X0N2 
ProdomE9X0N2 
UniProtKBB7L4R9SubName: Full=YrfA protein {ECO:0000313|EMBL:CAV00143.1};
InterProB7L4R9 
PFAMB7L4R9 
ProdomB7L4R9 
UniProtKBG0F614SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEJ58789.1};
InterProG0F614 
PFAMG0F614 
ProdomG0F614 
UniProtKBG2CRD1SubName: Full=Putative uncharacterized protein;
InterProG2CRD1 
PFAMG2CRD1 
ProdomG2CRD1 
UniProtKBA0A0E1M4B1SubName: Full=DNA catabolic protein {ECO:0000313|EMBL:AJF58198.1};
InterProA0A0E1M4B1 
PFAMA0A0E1M4B1 
ProdomA0A0E1M4B1 
UniProtKBA0A0A0FHE6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KGM61910.1};
InterProA0A0A0FHE6 
PFAMA0A0A0FHE6 
ProdomA0A0A0FHE6 
UniProtKBA0A080EDD1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN45431.1};
InterProA0A080EDD1 
PFAMA0A080EDD1 
ProdomA0A080EDD1 
UniProtKBF4M522SubName: Full=Putative uncharacterized protein;
InterProF4M522 
PFAMF4M522 
ProdomF4M522 
UniProtKBH1F9U0SubName: Full=Putative uncharacterized protein;
InterProH1F9U0 
PFAMH1F9U0 
ProdomH1F9U0 
UniProtKBA7ZSR7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ABV18862.1};
InterProA7ZSR7 
PFAMA7ZSR7 
ProdomA7ZSR7 
UniProtKBB2U3J8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACD08873.1};
InterProB2U3J8 
PFAMB2U3J8 
ProdomB2U3J8 
UniProtKBA0A069XU69SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU31134.1};
InterProA0A069XU69 
PFAMA0A069XU69 
ProdomA0A069XU69 
UniProtKBA0A070T3R6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX23659.1};
InterProA0A070T3R6 
PFAMA0A070T3R6 
ProdomA0A070T3R6 
UniProtKBA0A071C1Y0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY91388.1};
InterProA0A071C1Y0 
PFAMA0A071C1Y0 
ProdomA0A071C1Y0 
UniProtKBA0A073GMG5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ65981.1};
InterProA0A073GMG5 
PFAMA0A073GMG5 
ProdomA0A073GMG5 
UniProtKBA0A079FAJ3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY54993.1};
InterProA0A079FAJ3 
PFAMA0A079FAJ3 
ProdomA0A079FAJ3 
UniProtKBF4UUD0SubName: Full=Putative uncharacterized protein;
InterProF4UUD0 
PFAMF4UUD0 
ProdomF4UUD0