University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P45807.1
Original Database ID ref NP_414999.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation ybam_ecoli recname: full=uncharacterized
protein ybam
Sequence Length 53

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-53
Protein Length53
Template PDB Code1yqtA
Template Region508-583
Sequence Identity21%
E-Value0
GA3410.13
MPQS0.5373
z-DOPE0.64
TSVMod MethodMTALL
TSVMod RMSD12.777
TSVMod NO350.05
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1yqtrnase-l inhibitor
DBALI1yqtA 
JenaImageLibrary1yqt 
Target Sequence
UniProtKBL4PAP4SubName: Full=Uncharacterized protein;
InterProL4PAP4 
PFAML4PAP4 
ProdomL4PAP4 
UniProtKBH4UFF4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EHV63406.1};
InterProH4UFF4 
PFAMH4UFF4 
ProdomH4UFF4 
UniProtKBH4W6R8SubName: Full=Uncharacterized protein;
InterProH4W6R8 
PFAMH4W6R8 
ProdomH4W6R8 
UniProtKBH0QBF5SubName: Full=Uncharacterized protein;
InterProH0QBF5 
PFAMH0QBF5 
ProdomH0QBF5 
UniProtKBG2AQS1SubName: Full=Putative uncharacterized protein;
InterProG2AQS1 
PFAMG2AQS1 
ProdomG2AQS1 
UniProtKBI2R6D0SubName: Full=Uncharacterized protein;
InterProI2R6D0 
PFAMI2R6D0 
ProdomI2R6D0 
UniProtKBI2I2R7SubName: Full=Uncharacterized protein;
InterProI2I2R7 
PFAMI2I2R7 
ProdomI2I2R7 
UniProtKBI1BD54SubName: Full=Uncharacterized protein;
InterProI1BD54 
PFAMI1BD54 
ProdomI1BD54 
UniProtKBI4TFW7SubName: Full=Uncharacterized protein;
InterProI4TFW7 
PFAMI4TFW7 
ProdomI4TFW7 
UniProtKBI4JC20SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIF86779.1};
InterProI4JC20 
PFAMI4JC20 
ProdomI4JC20 
UniProtKBK5CIS6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EKJ80893.1};
InterProK5CIS6 
PFAMK5CIS6 
ProdomK5CIS6 
UniProtKBH4UWA4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EHV64634.1};
InterProH4UWA4 
PFAMH4UWA4 
ProdomH4UWA4 
UniProtKBG2B5P4SubName: Full=Putative uncharacterized protein;
InterProG2B5P4 
PFAMG2B5P4 
ProdomG2B5P4 
UniProtKBF9R3L5SubName: Full=Putative uncharacterized protein;
InterProF9R3L5 
PFAMF9R3L5 
ProdomF9R3L5 
UniProtKBE1HS42SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK89256.1};
InterProE1HS42 
PFAME1HS42 
ProdomE1HS42 
UniProtKBE3PFT1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CBJ00022.1};
InterProE3PFT1 
PFAME3PFT1 
ProdomE3PFT1 
UniProtKBL8BUF3SubName: Full=Putative inner membrane protein;
InterProL8BUF3 
PFAML8BUF3 
ProdomL8BUF3 
UniProtKBE9WBI2SubName: Full=Putative uncharacterized protein;
InterProE9WBI2 
PFAME9WBI2 
ProdomE9WBI2 
UniProtKBL5IFF7SubName: Full=Uncharacterized protein;
InterProL5IFF7 
PFAML5IFF7 
ProdomL5IFF7 
UniProtKBM7VG30SubName: Full=Uncharacterized protein;
InterProM7VG30 
PFAMM7VG30 
ProdomM7VG30 
UniProtKBE9XW22SubName: Full=Putative uncharacterized protein;
InterProE9XW22 
PFAME9XW22 
ProdomE9XW22 
UniProtKBM7VY49SubName: Full=Uncharacterized protein;
InterProM7VY49 
PFAMM7VY49 
ProdomM7VY49 
UniProtKBF4M742SubName: Full=Putative uncharacterized protein;
InterProF4M742 
PFAMF4M742 
ProdomF4M742 
UniProtKBF4SJG4SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:EGI10006.1};
InterProF4SJG4 
PFAMF4SJG4 
ProdomF4SJG4 
UniProtKBI2ZXV7SubName: Full=PF10689 family protein;
InterProI2ZXV7 
PFAMI2ZXV7 
ProdomI2ZXV7 
UniProtKBI0ZNL2SubName: Full=Uncharacterized protein;
InterProI0ZNL2 
PFAMI0ZNL2 
ProdomI0ZNL2 
UniProtKBA0A071DJ39SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ40286.1};
InterProA0A071DJ39 
PFAMA0A071DJ39 
ProdomA0A071DJ39 
UniProtKBA0A073GZD7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ71133.1};
InterProA0A073GZD7 
PFAMA0A073GZD7 
ProdomA0A073GZD7 
UniProtKBA0A073TD27SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL25752.1};
InterProA0A073TD27 
PFAMA0A073TD27 
ProdomA0A073TD27 
UniProtKBA0A074HZP7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO01494.1};
InterProA0A074HZP7 
PFAMA0A074HZP7 
ProdomA0A074HZP7 
UniProtKBA0A074IPM1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO16091.1};
InterProA0A074IPM1 
PFAMA0A074IPM1 
ProdomA0A074IPM1 
UniProtKBA0A079DL14SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY22739.1};
InterProA0A079DL14 
PFAMA0A079DL14 
ProdomA0A079DL14 
UniProtKBA0A079F6T5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY53566.1};
InterProA0A079F6T5 
PFAMA0A079F6T5 
ProdomA0A079F6T5 
UniProtKBA0A079FT16SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY63847.1};
InterProA0A079FT16 
PFAMA0A079FT16 
ProdomA0A079FT16 
UniProtKBA0A079H2H7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY97621.1};
InterProA0A079H2H7 
PFAMA0A079H2H7 
ProdomA0A079H2H7 
UniProtKBA0A080GYC7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN92452.1};
InterProA0A080GYC7 
PFAMA0A080GYC7 
ProdomA0A080GYC7 
UniProtKBA0A071CHC6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ18268.1};
InterProA0A071CHC6 
PFAMA0A071CHC6 
ProdomA0A071CHC6 
UniProtKBA0A071C3A5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY92775.1};
InterProA0A071C3A5 
PFAMA0A071C3A5 
ProdomA0A071C3A5 
UniProtKBA0A071AEV7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY57360.1};
InterProA0A071AEV7 
PFAMA0A071AEV7 
ProdomA0A071AEV7 
UniProtKBL3BU30SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ELC91472.1};
InterProL3BU30 
PFAML3BU30 
ProdomL3BU30 
UniProtKBL2ZJ20SubName: Full=Uncharacterized protein;
InterProL2ZJ20 
PFAML2ZJ20 
ProdomL2ZJ20 
UniProtKBB3XD12SubName: Full=Putative uncharacterized protein;
InterProB3XD12 
PFAMB3XD12 
ProdomB3XD12 
UniProtKBA0A024KRQ4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDP67876.1};
InterProA0A024KRQ4 
PFAMA0A024KRQ4 
ProdomA0A024KRQ4 
UniProtKBA0A024L6L1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDP72553.1};
InterProA0A024L6L1 
PFAMA0A024L6L1 
ProdomA0A024L6L1 
UniProtKBA0A069XN41SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU31368.1};
InterProA0A069XN41 
PFAMA0A069XN41 
ProdomA0A069XN41 
UniProtKBA0A069Z3F9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU53445.1};
InterProA0A069Z3F9 
PFAMA0A069Z3F9 
ProdomA0A069Z3F9 
UniProtKBA0A070SUD8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX21306.1};
InterProA0A070SUD8 
PFAMA0A070SUD8 
ProdomA0A070SUD8 
UniProtKBA0A070UWD5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX45849.1};
InterProA0A070UWD5 
PFAMA0A070UWD5 
ProdomA0A070UWD5 
UniProtKBA0A070YDU7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX89296.1};
InterProA0A070YDU7 
PFAMA0A070YDU7 
ProdomA0A070YDU7 
UniProtKBA0A080IGY8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO28531.1};
InterProA0A080IGY8 
PFAMA0A080IGY8 
ProdomA0A080IGY8 
UniProtKBD8BVW0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFI89199.1};
InterProD8BVW0 
PFAMD8BVW0 
ProdomD8BVW0 
UniProtKBA0A0E0TUG0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE55166.1};
InterProA0A0E0TUG0 
PFAMA0A0E0TUG0 
ProdomA0A0E0TUG0 
UniProtKBL8C8E8SubName: Full=Putative inner membrane protein;
InterProL8C8E8 
PFAML8C8E8 
ProdomL8C8E8 
UniProtKBG2F2W3SubName: Full=Putative uncharacterized protein;
InterProG2F2W3 
PFAMG2F2W3 
ProdomG2F2W3 
UniProtKBH4X1W7SubName: Full=Uncharacterized protein;
InterProH4X1W7 
PFAMH4X1W7 
ProdomH4X1W7 
UniProtKBI2YRM3SubName: Full=PF10689 family protein;
InterProI2YRM3 
PFAMI2YRM3 
ProdomI2YRM3 
UniProtKBK5G8J2SubName: Full=Uncharacterized protein;
InterProK5G8J2 
PFAMK5G8J2 
ProdomK5G8J2 
UniProtKBB1XFQ3SubName: Full=Predicted protein;
InterProB1XFQ3 
PFAMB1XFQ3 
ProdomB1XFQ3 
UniProtKBL3TZJ0SubName: Full=Uncharacterized protein;
InterProL3TZJ0 
PFAML3TZJ0 
ProdomL3TZJ0 
UniProtKBL3VN94SubName: Full=Uncharacterized protein;
InterProL3VN94 
PFAML3VN94 
ProdomL3VN94 
UniProtKBC6UBT1SubName: Full=Putative uncharacterized protein ybaM;
InterProC6UBT1 
PFAMC6UBT1 
ProdomC6UBT1 
UniProtKBL4FKS8SubName: Full=Uncharacterized protein;
InterProL4FKS8 
PFAML4FKS8 
ProdomL4FKS8 
UniProtKBL4W163SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ELI33729.1};
InterProL4W163 
PFAML4W163 
ProdomL4W163 
UniProtKBD7ZUQ6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK25377.1};
InterProD7ZUQ6 
PFAMD7ZUQ6 
ProdomD7ZUQ6 
UniProtKBA0A0E1LU77SubName: Full=Small protein involved in the cell envelope stress response {ECO:0000313|EMBL:AJF55230.1};
InterProA0A0E1LU77 
PFAMA0A0E1LU77 
ProdomA0A0E1LU77 
UniProtKBL4A4B8SubName: Full=Uncharacterized protein;
InterProL4A4B8 
PFAML4A4B8 
ProdomL4A4B8 
UniProtKBA0A0E3KL83SubName: Full=Uncharacterized protein YbaM {ECO:0000313|EMBL:AKA89453.1};
InterProA0A0E3KL83 
PFAMA0A0E3KL83 
ProdomA0A0E3KL83 
UniProtKBF8X7P1SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:EGU99394.1};
InterProF8X7P1 
PFAMF8X7P1 
ProdomF8X7P1 
UniProtKBD6I7H9SubName: Full=YbaM protein {ECO:0000313|EMBL:EFF06751.2};
InterProD6I7H9 
PFAMD6I7H9 
ProdomD6I7H9 
UniProtKBE6B776SubName: Full=Uncharacterized protein ybaM {ECO:0000313|EMBL:EFU97209.1};
InterProE6B776 
PFAME6B776 
ProdomE6B776 
UniProtKBG2CGB1SubName: Full=Putative uncharacterized protein;
InterProG2CGB1 
PFAMG2CGB1 
ProdomG2CGB1 
UniProtKBI2YCP2SubName: Full=PF10689 family protein;
InterProI2YCP2 
PFAMI2YCP2 
ProdomI2YCP2 
UniProtKBL3L298SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ELE04629.1};
InterProL3L298 
PFAML3L298 
ProdomL3L298 
UniProtKBC5W0C3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT30190.1};
InterProC5W0C3 
PFAMC5W0C3 
ProdomC5W0C3 
UniProtKBD8B777SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFJ65086.1};
InterProD8B777 
PFAMD8B777 
ProdomD8B777 
UniProtKBD8EQ29SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK50153.1};
InterProD8EQ29 
PFAMD8EQ29 
ProdomD8EQ29 
UniProtKBL3W0F1SubName: Full=Uncharacterized protein;
InterProL3W0F1 
PFAML3W0F1 
ProdomL3W0F1 
UniProtKBL3LP59SubName: Full=Uncharacterized protein;
InterProL3LP59 
PFAML3LP59 
ProdomL3LP59 
UniProtKBL2V7U1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ELC11581.1};
InterProL2V7U1 
PFAML2V7U1 
ProdomL2V7U1 
UniProtKBC4ZUS0SubName: Full=Predicted protein;
InterProC4ZUS0 
PFAMC4ZUS0 
ProdomC4ZUS0 
UniProtKBL3RQN5SubName: Full=Uncharacterized protein;
InterProL3RQN5 
PFAML3RQN5 
ProdomL3RQN5 
UniProtKBC6EKZ8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT30190.1};
InterProC6EKZ8 
PFAMC6EKZ8 
ProdomC6EKZ8 
UniProtKBL3R161SubName: Full=Uncharacterized protein;
InterProL3R161 
PFAML3R161 
ProdomL3R161 
UniProtKBK5I1R8SubName: Full=Uncharacterized protein;
InterProK5I1R8 
PFAMK5I1R8 
ProdomK5I1R8 
UniProtKBC9QQ53SubName: Full=Uncharacterized protein;
InterProC9QQ53 
PFAMC9QQ53 
ProdomC9QQ53 
UniProtKBD8AKZ7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFK16175.1};
InterProD8AKZ7 
PFAMD8AKZ7 
ProdomD8AKZ7 
UniProtKBL3X8M3SubName: Full=Uncharacterized protein;
InterProL3X8M3 
PFAML3X8M3 
ProdomL3X8M3 
UniProtKBG0FCX1SubName: Full=Uncharacterized protein ybaM {ECO:0000313|EMBL:AEJ55087.1};
InterProG0FCX1 
PFAMG0FCX1 
ProdomG0FCX1 
UniProtKBK3J6X7SubName: Full=Uncharacterized protein;
InterProK3J6X7 
PFAMK3J6X7 
ProdomK3J6X7 
UniProtKBK3J058SubName: Full=Uncharacterized protein;
InterProK3J058 
PFAMK3J058 
ProdomK3J058 
UniProtKBM2PGX3SubName: Full=Uncharacterized protein;
InterProM2PGX3 
PFAMM2PGX3 
ProdomM2PGX3 
UniProtKBE9WPU2SubName: Full=Putative uncharacterized protein;
InterProE9WPU2 
PFAME9WPU2 
ProdomE9WPU2 
UniProtKBE9YDN9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGB67530.1};
InterProE9YDN9 
PFAME9YDN9 
ProdomE9YDN9 
UniProtKBL4X1I0SubName: Full=Uncharacterized protein;
InterProL4X1I0 
PFAML4X1I0 
ProdomL4X1I0 
UniProtKBG2C0J4SubName: Full=Putative uncharacterized protein;
InterProG2C0J4 
PFAMG2C0J4 
ProdomG2C0J4 
UniProtKBH4VC99SubName: Full=Uncharacterized protein;
InterProH4VC99 
PFAMH4VC99 
ProdomH4VC99 
UniProtKBH4VST5SubName: Full=Uncharacterized protein;
InterProH4VST5 
PFAMH4VST5 
ProdomH4VST5 
UniProtKBI2PT53SubName: Full=Uncharacterized protein;
InterProI2PT53 
PFAMI2PT53 
ProdomI2PT53 
UniProtKBI2XG55SubName: Full=PF10689 family protein {ECO:0000313|EMBL:EII47975.1};
InterProI2XG55 
PFAMI2XG55 
ProdomI2XG55 
UniProtKBL4N5P9SubName: Full=Uncharacterized protein;
InterProL4N5P9 
PFAML4N5P9 
ProdomL4N5P9