University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P46068.2
Original Database ID ref NP_416865.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation dsdc_ecoli recname: full=hth-type
transcriptional regulator dsdc;
altname: full= d-serine deaminase
activator
Sequence Length 311

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region18-307
Protein Length311
Template PDB Code3hhgA
Template Region6-293
Sequence Identity22%
E-Value0
GA3411
MPQS1.23488
z-DOPE-0.08
TSVMod MethodMSALL
TSVMod RMSD3.988
TSVMod NO350.706
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3hhgstructure of crga, a lysr-type transcriptional regulator from neisseria meningitidis.
DBALI3hhgA 
JenaImageLibrary3hhg 
Target Sequence
UniProtKBK5GWB8SubName: Full=D-serine deaminase transcriptional activator;
InterProK5GWB8 
PFAMK5GWB8 
ProdomK5GWB8 
UniProtKBA0A071BXU1SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDY86986.1};
InterProA0A071BXU1 
PFAMA0A071BXU1 
ProdomA0A071BXU1 
UniProtKBA0A071CC80SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDZ14993.1};
InterProA0A071CC80 
PFAMA0A071CC80 
ProdomA0A071CC80 
UniProtKBA0A071DNN1SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDZ41886.1};
InterProA0A071DNN1 
PFAMA0A071DNN1 
ProdomA0A071DNN1 
UniProtKBA0A073H397SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KEJ67927.1};
InterProA0A073H397 
PFAMA0A073H397 
ProdomA0A073H397 
UniProtKBA0A073U1F7SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KEL29080.1};
InterProA0A073U1F7 
PFAMA0A073U1F7 
ProdomA0A073U1F7 
UniProtKBA0A079F7Q8SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDY53898.1};
InterProA0A079F7Q8 
PFAMA0A079F7Q8 
ProdomA0A079F7Q8 
UniProtKBA0A079FW95SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDY67477.1};
InterProA0A079FW95 
PFAMA0A079FW95 
ProdomA0A079FW95 
UniProtKBA0A079GP56SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDY94044.1};
InterProA0A079GP56 
PFAMA0A079GP56 
ProdomA0A079GP56 
UniProtKBA0A080GJF5SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KEN89352.1};
InterProA0A080GJF5 
PFAMA0A080GJF5 
ProdomA0A080GJF5 
UniProtKBA0A071AJI5SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDY61364.1};
InterProA0A071AJI5 
PFAMA0A071AJI5 
ProdomA0A071AJI5 
UniProtKBA0A070YTP0SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDX90363.1};
InterProA0A070YTP0 
PFAMA0A070YTP0 
ProdomA0A070YTP0 
UniProtKBL3QRY5SubName: Full=D-serine deaminase transcriptional activator;
InterProL3QRY5 
PFAML3QRY5 
ProdomL3QRY5 
UniProtKBL3RG74SubName: Full=D-serine deaminase transcriptional activator;
InterProL3RG74 
PFAML3RG74 
ProdomL3RG74 
UniProtKBL3ZS31SubName: Full=D-serine deaminase transcriptional activator;
InterProL3ZS31 
PFAML3ZS31 
ProdomL3ZS31 
UniProtKBL4WCK3SubName: Full=D-serine deaminase transcriptional activator;
InterProL4WCK3 
PFAML4WCK3 
ProdomL4WCK3 
UniProtKBM2P1Z6SubName: Full=DNA-binding transcriptional regulator DsdC;
InterProM2P1Z6 
PFAMM2P1Z6 
ProdomM2P1Z6 
UniProtKBM7V5M0SubName: Full=DNA-binding transcriptional dual regulator;
InterProM7V5M0 
PFAMM7V5M0 
ProdomM7V5M0 
UniProtKBN2KLK5SubName: Full=D-serine deaminase transcriptional activator;
InterProN2KLK5 
PFAMN2KLK5 
ProdomN2KLK5 
UniProtKBA0A069XSE8SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDU32879.1};
InterProA0A069XSE8 
PFAMA0A069XSE8 
ProdomA0A069XSE8 
UniProtKBA0A069Z2L8SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KDU53804.1};
InterProA0A069Z2L8 
PFAMA0A069Z2L8 
ProdomA0A069Z2L8 
UniProtKBA0A080I2R5SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:KEO23496.1};
InterProA0A080I2R5 
PFAMA0A080I2R5 
ProdomA0A080I2R5 
UniProtKBA0A094VTS3SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:CEE03456.1};SubName: Full=HTH-type transcriptional regulator DsdC {ECO:0000313|EMBL:KGM82399.1};SubName: Full=Transcription
InterProA0A094VTS3 
PFAMA0A094VTS3 
ProdomA0A094VTS3 
UniProtKBS0ZG46SubName: Full=D-serine deaminase transcriptional activator;
InterProS0ZG46 
PFAMS0ZG46 
ProdomS0ZG46 
UniProtKBB1X9N7SubName: Full=DNA-binding transcriptional dual regulator;
InterProB1X9N7 
PFAMB1X9N7 
ProdomB1X9N7 
UniProtKBB5AXC4SubName: Full=Putative transcriptional regulator {ECO:0000313|EMBL:ACG50160.1};
InterProB5AXC4 
PFAMB5AXC4 
ProdomB5AXC4 
UniProtKBC4ZVQ1SubName: Full=DNA-binding transcriptional dual regulator;
InterProC4ZVQ1 
PFAMC4ZVQ1 
ProdomC4ZVQ1 
UniProtKBC9QQH3SubName: Full=DNA-binding transcriptional regulator DsdC;SubName: Full=Transcriptional regulator, LysR family;
InterProC9QQH3 
PFAMC9QQH3 
ProdomC9QQH3 
UniProtKBD8BWJ0SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:EFI88951.1};
InterProD8BWJ0 
PFAMD8BWJ0 
ProdomD8BWJ0 
UniProtKBE1HSH9SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:EFK89144.1};
InterProE1HSH9 
PFAME1HSH9 
ProdomE1HSH9 
UniProtKBE9WVP0SubName: Full=D-serine deaminase transcriptional activator protein;
InterProE9WVP0 
PFAME9WVP0 
ProdomE9WVP0 
UniProtKBG2EZD0SubName: Full=DNA-binding transcriptional regulator DsdC;
InterProG2EZD0 
PFAMG2EZD0 
ProdomG2EZD0 
UniProtKBG2CMZ2SubName: Full=D-serine deaminase transcriptional activator;
InterProG2CMZ2 
PFAMG2CMZ2 
ProdomG2CMZ2 
UniProtKBS1LD17SubName: Full=D-serine deaminase transcriptional activator;
InterProS1LD17 
PFAMS1LD17 
ProdomS1LD17 
UniProtKBA0A0G3HY92SubName: Full=DNA-binding transcriptional dual regulator protein {ECO:0000313|EMBL:AKK18301.1};
InterProA0A0G3HY92 
PFAMA0A0G3HY92 
ProdomA0A0G3HY92 
UniProtKBT8X2L0SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:EQX51072.1};
InterProT8X2L0 
PFAMT8X2L0 
ProdomT8X2L0 
UniProtKBT8YVV6SubName: Full=D-serine deaminase transcriptional activator;
InterProT8YVV6 
PFAMT8YVV6 
ProdomT8YVV6 
UniProtKBT9J9B2SubName: Full=D-serine deaminase transcriptional activator;
InterProT9J9B2 
PFAMT9J9B2 
ProdomT9J9B2 
UniProtKBT9MPP4SubName: Full=D-serine deaminase transcriptional activator;
InterProT9MPP4 
PFAMT9MPP4 
ProdomT9MPP4 
UniProtKBT9UYZ3SubName: Full=D-serine deaminase transcriptional activator;
InterProT9UYZ3 
PFAMT9UYZ3 
ProdomT9UYZ3 
UniProtKBU0DBW9SubName: Full=D-serine deaminase transcriptional activator;
InterProU0DBW9 
PFAMU0DBW9 
ProdomU0DBW9 
UniProtKBG0FEV3SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:AEJ57590.1};
InterProG0FEV3 
PFAMG0FEV3 
ProdomG0FEV3 
UniProtKBG2BC32SubName: Full=D-serine deaminase transcriptional activator;
InterProG2BC32 
PFAMG2BC32 
ProdomG2BC32 
UniProtKBF9R4Q8SubName: Full=DNA-binding transcriptional regulator DsdC;
InterProF9R4Q8 
PFAMF9R4Q8 
ProdomF9R4Q8 
UniProtKBH4VZ56SubName: Full=D-serine deaminase transcriptional activator;
InterProH4VZ56 
PFAMH4VZ56 
ProdomH4VZ56 
UniProtKBL3WW52SubName: Full=D-serine deaminase transcriptional activator;
InterProL3WW52 
PFAML3WW52 
ProdomL3WW52 
UniProtKBL3KK05SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:ELD98696.1};
InterProL3KK05 
PFAML3KK05 
ProdomL3KK05 
UniProtKBK3HRH8SubName: Full=D-serine deaminase transcriptional activator;
InterProK3HRH8 
PFAMK3HRH8 
ProdomK3HRH8 
UniProtKBT9MF45SubName: Full=D-serine deaminase transcriptional activator;
InterProT9MF45 
PFAMT9MF45 
ProdomT9MF45 
UniProtKBH0QB08SubName: Full=DNA-binding transcriptional dual regulator;
InterProH0QB08 
PFAMH0QB08 
ProdomH0QB08 
UniProtKBP77443RecName: Full=HTH-type transcriptional regulator DsdC;AltName: Full=D-serine deaminase activator;
InterProP77443 
PFAMP77443 
ProdomP77443 
UniProtKBP46068RecName: Full=HTH-type transcriptional regulator DsdC;AltName: Full=D-serine deaminase activator;
InterProP46068 
PFAMP46068 
ProdomP46068 
UniProtKBM7WJC8SubName: Full=DNA-binding transcriptional dual regulator;
InterProM7WJC8 
PFAMM7WJC8 
ProdomM7WJC8 
UniProtKBL4P0H6SubName: Full=D-serine deaminase transcriptional activator;
InterProL4P0H6 
PFAML4P0H6 
ProdomL4P0H6 
UniProtKBI4J3G2SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:EIF83771.1};
InterProI4J3G2 
PFAMI4J3G2 
ProdomI4J3G2 
UniProtKBT7ZMX4SubName: Full=D-serine deaminase transcriptional activator;
InterProT7ZMX4 
PFAMT7ZMX4 
ProdomT7ZMX4 
UniProtKBS1CC05SubName: Full=D-serine deaminase transcriptional activator;
InterProS1CC05 
PFAMS1CC05 
ProdomS1CC05 
UniProtKBL3VR77SubName: Full=D-serine deaminase transcriptional activator;
InterProL3VR77 
PFAML3VR77 
ProdomL3VR77 
UniProtKBI2XCA1SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:EII46621.1};
InterProI2XCA1 
PFAMI2XCA1 
ProdomI2XCA1 
UniProtKBS1KQU6SubName: Full=D-serine deaminase transcriptional activator;
InterProS1KQU6 
PFAMS1KQU6 
ProdomS1KQU6 
UniProtKBL3VC67SubName: Full=D-serine deaminase transcriptional activator;
InterProL3VC67 
PFAML3VC67 
ProdomL3VC67 
UniProtKBH9UUY1SubName: Full=HTH-type transcriptional regulator dsdC {ECO:0000313|EMBL:AFG41324.1};
InterProH9UUY1 
PFAMH9UUY1 
ProdomH9UUY1 
UniProtKBL8C661SubName: Full=D-serine dehydratase transcriptional activator;
InterProL8C661 
PFAML8C661 
ProdomL8C661 
UniProtKBN1SIE6SubName: Full=D-serine deaminase transcriptional activator;
InterProN1SIE6 
PFAMN1SIE6 
ProdomN1SIE6 
UniProtKBH4ULY7SubName: Full=D-serine deaminase transcriptional activator {ECO:0000313|EMBL:EHV56945.1};
InterProH4ULY7 
PFAMH4ULY7 
ProdomH4ULY7 
UniProtKBI2YKH5SubName: Full=D-serine deaminase transcriptional activator;
InterProI2YKH5 
PFAMI2YKH5 
ProdomI2YKH5 
UniProtKBH4VIY6SubName: Full=D-serine deaminase transcriptional activator;
InterProH4VIY6 
PFAMH4VIY6 
ProdomH4VIY6 
UniProtKBT9K7F0SubName: Full=D-serine deaminase transcriptional activator;
InterProT9K7F0 
PFAMT9K7F0 
ProdomT9K7F0 
UniProtKBH4WDE7SubName: Full=D-serine deaminase transcriptional activator;
InterProH4WDE7 
PFAMH4WDE7 
ProdomH4WDE7 
UniProtKBI2Y9B7SubName: Full=D-serine deaminase transcriptional activator;
InterProI2Y9B7 
PFAMI2Y9B7 
ProdomI2Y9B7 
UniProtKBI2R0Z7SubName: Full=D-serine deaminase transcriptional activator;
InterProI2R0Z7 
PFAMI2R0Z7 
ProdomI2R0Z7 
UniProtKBS0U788SubName: Full=D-serine deaminase transcriptional activator;
InterProS0U788 
PFAMS0U788 
ProdomS0U788 
UniProtKBI2PA23SubName: Full=D-serine deaminase transcriptional activator;
InterProI2PA23 
PFAMI2PA23 
ProdomI2PA23 
UniProtKBS1PTS4SubName: Full=D-serine deaminase transcriptional activator;
InterProS1PTS4 
PFAMS1PTS4 
ProdomS1PTS4 
UniProtKBK3HZB3SubName: Full=D-serine deaminase transcriptional activator;
InterProK3HZB3 
PFAMK3HZB3 
ProdomK3HZB3 
UniProtKBS0Y1H6SubName: Full=D-serine deaminase transcriptional activator;
InterProS0Y1H6 
PFAMS0Y1H6 
ProdomS0Y1H6 
UniProtKBI2ZRA2SubName: Full=D-serine deaminase transcriptional activator;
InterProI2ZRA2 
PFAMI2ZRA2 
ProdomI2ZRA2 
UniProtKBS0ZZU5SubName: Full=D-serine deaminase transcriptional activator;
InterProS0ZZU5 
PFAMS0ZZU5 
ProdomS0ZZU5 
UniProtKBS1K0D4SubName: Full=D-serine deaminase transcriptional activator;
InterProS1K0D4 
PFAMS1K0D4 
ProdomS1K0D4 
UniProtKBS1EWS9SubName: Full=D-serine deaminase transcriptional activator;
InterProS1EWS9 
PFAMS1EWS9 
ProdomS1EWS9 
UniProtKBC9QQH3SubName: Full=DNA-binding transcriptional regulator DsdC;SubName: Full=Transcriptional regulator, LysR family;
InterProC9QQH3 
PFAMC9QQH3 
ProdomC9QQH3 
UniProtKBD8BWJ0SubName: Full=D-serine deaminase transcriptional activator;
InterProD8BWJ0 
PFAMD8BWJ0 
ProdomD8BWJ0 
UniProtKBE9WVP0SubName: Full=D-serine deaminase transcriptional activator protein;
InterProE9WVP0 
PFAME9WVP0 
ProdomE9WVP0 
UniProtKBF9R4Q8SubName: Full=DNA-binding transcriptional regulator DsdC;
InterProF9R4Q8 
PFAMF9R4Q8 
ProdomF9R4Q8 
UniProtKBI4J3G2SubName: Full=D-serine deaminase transcriptional activator;
InterProI4J3G2 
PFAMI4J3G2 
ProdomI4J3G2 
UniProtKBG2EZD0SubName: Full=DNA-binding transcriptional regulator DsdC;
InterProG2EZD0 
PFAMG2EZD0 
ProdomG2EZD0 
UniProtKBE1HSH9SubName: Full=D-serine deaminase transcriptional activator;
InterProE1HSH9 
PFAME1HSH9 
ProdomE1HSH9 
UniProtKBC4ZVQ1SubName: Full=DNA-binding transcriptional dual regulator;
InterProC4ZVQ1 
PFAMC4ZVQ1 
ProdomC4ZVQ1 
UniProtKBI2ZRA2SubName: Full=D-serine deaminase transcriptional activator;
InterProI2ZRA2 
PFAMI2ZRA2 
ProdomI2ZRA2 
UniProtKBI2YKH5SubName: Full=D-serine deaminase transcriptional activator;
InterProI2YKH5 
PFAMI2YKH5 
ProdomI2YKH5 
UniProtKBI2PA23SubName: Full=D-serine deaminase transcriptional activator;
InterProI2PA23 
PFAMI2PA23 
ProdomI2PA23 
UniProtKBH4WDE7SubName: Full=D-serine deaminase transcriptional activator;
InterProH4WDE7 
PFAMH4WDE7 
ProdomH4WDE7 
UniProtKBH9UUY1SubName: Full=HTH-type transcriptional regulator dsdC;
InterProH9UUY1 
PFAMH9UUY1 
ProdomH9UUY1 
UniProtKBG0FEV3SubName: Full=D-serine deaminase transcriptional activator;
InterProG0FEV3 
PFAMG0FEV3 
ProdomG0FEV3 
UniProtKBA0A8F9I686SubName: Full=DNA-binding transcriptional regulator DsdC {ECO:0000313|EMBL:QYE40826.1}
InterProA0A8F9I686 
PFAMA0A8F9I686 
ProdomA0A8F9I686 
UniProtKBG2BC32SubName: Full=D-serine deaminase transcriptional activator;
InterProG2BC32 
PFAMG2BC32 
ProdomG2BC32 
UniProtKBI2Y9B7SubName: Full=D-serine deaminase transcriptional activator;
InterProI2Y9B7 
PFAMI2Y9B7 
ProdomI2Y9B7 
UniProtKBB1X9N7SubName: Full=DNA-binding transcriptional dual regulator;
InterProB1X9N7 
PFAMB1X9N7 
ProdomB1X9N7 
UniProtKBI2XCA1SubName: Full=D-serine deaminase transcriptional activator;
InterProI2XCA1 
PFAMI2XCA1 
ProdomI2XCA1 
UniProtKBB5AXC4SubName: Full=DNA-binding transcriptional regulator DsdC;SubName: Full=Putative transcriptional regulator;
InterProB5AXC4 
PFAMB5AXC4 
ProdomB5AXC4