University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A070SJ07
Original Database ID ref NP_417872.2
Organism Escherichia coli, Shigella sonnei, etc.
Annotation subname: full=comf family protein
{eco:0000313|embl:kdx18037.1};
Sequence Length 227

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region62-223
Protein Length227
Template PDB Code1g2qA
Template Region12-158
Sequence Identity19%
E-Value0
GA3410.92
MPQS0.817756
z-DOPE0.31
TSVMod MethodMTALL
TSVMod RMSD7.965
TSVMod NO350.486
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1g2qcrystal structure of adenine phosphoribosyltransferase ; EC: 2.4.2.7 ; PFAM: PF00156 ; SCOP: 65117
DBALI1g2qA 
CATH3.40.50.2020 Domain: 1g2qA00 Rossmann fold (83%)
JenaImageLibrary1g2q 
Target Sequence
UniProtKBI2Y8L1SubName: Full=ComF family protein;
InterProI2Y8L1 
PFAMI2Y8L1 
ProdomI2Y8L1 
UniProtKBA0A079FJM8SubName: Full=ComF family protein {ECO:0000313|EMBL:KDY55020.1};
InterProA0A079FJM8 
PFAMA0A079FJM8 
ProdomA0A079FJM8 
UniProtKBA0A079G2I8SubName: Full=ComF family protein {ECO:0000313|EMBL:KDY68635.1};
InterProA0A079G2I8 
PFAMA0A079G2I8 
ProdomA0A079G2I8 
UniProtKBA0A080FK02SubName: Full=ComF family protein {ECO:0000313|EMBL:KEN64582.1};
InterProA0A080FK02 
PFAMA0A080FK02 
ProdomA0A080FK02 
UniProtKBA0A080GGV4SubName: Full=ComF family protein {ECO:0000313|EMBL:KEN87361.1};
InterProA0A080GGV4 
PFAMA0A080GGV4 
ProdomA0A080GGV4 
UniProtKBA0A094VM63SubName: Full=DNA utilization protein GntX {ECO:0000313|EMBL:AJB53432.1};SubName: Full=Protein GntX {ECO:0000313|EMBL:KGM85222.1};
InterProA0A094VM63 
PFAMA0A094VM63 
ProdomA0A094VM63 
UniProtKBA0A0E1M6Y8SubName: Full=DNA catabolic protein {ECO:0000313|EMBL:AJF58219.1};
InterProA0A0E1M6Y8 
PFAMA0A0E1M6Y8 
ProdomA0A0E1M6Y8 
UniProtKBA0A0E3MXY5SubName: Full=Protein GntX {ECO:0000313|EMBL:AKA92592.1};
InterProA0A0E3MXY5 
PFAMA0A0E3MXY5 
ProdomA0A0E3MXY5 
UniProtKBA0A0G3I6V9SubName: Full=Protein required for the utilization of DNA as a carbon source protein {ECO:0000313|EMBL:AKK19142.1};
InterProA0A0G3I6V9 
PFAMA0A0G3I6V9 
ProdomA0A0G3I6V9 
UniProtKBL5HSM9SubName: Full=Protein GntX;
InterProL5HSM9 
PFAML5HSM9 
ProdomL5HSM9 
UniProtKBL8BZK3SubName: Full=Competence protein F homolog,phosphoribosyltransferase domain protein YhgH required for utilization of DNA as sole source of carbon and energy;
InterProL8BZK3 
PFAML8BZK3 
ProdomL8BZK3 
UniProtKBA0A074HQC5SubName: Full=ComF family protein {ECO:0000313|EMBL:KEN97078.1};
InterProA0A074HQC5 
PFAMA0A074HQC5 
ProdomA0A074HQC5 
UniProtKBA0A073GKB8SubName: Full=ComF family protein {ECO:0000313|EMBL:KEJ66004.1};
InterProA0A073GKB8 
PFAMA0A073GKB8 
ProdomA0A073GKB8 
UniProtKBA0A073FR16SubName: Full=ComF family protein {ECO:0000313|EMBL:KEJ44412.1};
InterProA0A073FR16 
PFAMA0A073FR16 
ProdomA0A073FR16 
UniProtKBS1C379SubName: Full=Protein GntX;
InterProS1C379 
PFAMS1C379 
ProdomS1C379 
UniProtKBI2ZTD3SubName: Full=ComF family protein;
InterProI2ZTD3 
PFAMI2ZTD3 
ProdomI2ZTD3 
UniProtKBI4J6I7SubName: Full=Protein GntX {ECO:0000313|EMBL:EIF84846.1};
InterProI4J6I7 
PFAMI4J6I7 
ProdomI4J6I7 
UniProtKBL2YYE3SubName: Full=Protein GntX;
InterProL2YYE3 
PFAML2YYE3 
ProdomL2YYE3 
UniProtKBL3KAS9SubName: Full=Protein GntX {ECO:0000313|EMBL:ELD96144.1};
InterProL3KAS9 
PFAML3KAS9 
ProdomL3KAS9 
UniProtKBL3QPQ1SubName: Full=Protein GntX;
InterProL3QPQ1 
PFAML3QPQ1 
ProdomL3QPQ1 
UniProtKBA0A070SJ07SubName: Full=ComF family protein {ECO:0000313|EMBL:KDX18037.1};
InterProA0A070SJ07 
PFAMA0A070SJ07 
ProdomA0A070SJ07 
UniProtKBA0A070YA89SubName: Full=ComF family protein {ECO:0000313|EMBL:KDX88537.1};
InterProA0A070YA89 
PFAMA0A070YA89 
ProdomA0A070YA89 
UniProtKBA0A071AR32SubName: Full=ComF family protein {ECO:0000313|EMBL:KDY65809.1};
InterProA0A071AR32 
PFAMA0A071AR32 
ProdomA0A071AR32 
UniProtKBA0A071DHA0SubName: Full=ComF family protein {ECO:0000313|EMBL:KDZ40542.1};
InterProA0A071DHA0 
PFAMA0A071DHA0 
ProdomA0A071DHA0 
UniProtKBM7UBG6SubName: Full=Gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system;
InterProM7UBG6 
PFAMM7UBG6 
ProdomM7UBG6 
UniProtKBM7VKJ5SubName: Full=Gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system;
InterProM7VKJ5 
PFAMM7VKJ5 
ProdomM7VKJ5 
UniProtKBD8AIA5SubName: Full=ComF family protein {ECO:0000313|EMBL:EFK17119.1};
InterProD8AIA5 
PFAMD8AIA5 
ProdomD8AIA5 
UniProtKBL4F8G3SubName: Full=Protein GntX;
InterProL4F8G3 
PFAML4F8G3 
ProdomL4F8G3 
UniProtKBD8B3U0SubName: Full=ComF family protein {ECO:0000313|EMBL:EFJ66247.1};
InterProD8B3U0 
PFAMD8B3U0 
ProdomD8B3U0 
UniProtKBL3WBE1SubName: Full=Protein GntX;
InterProL3WBE1 
PFAML3WBE1 
ProdomL3WBE1 
UniProtKBN4IU02SubName: Full=ComF family protein;
InterProN4IU02 
PFAMN4IU02 
ProdomN4IU02 
UniProtKBB1X759SubName: Full=Gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system;
InterProB1X759 
PFAMB1X759 
ProdomB1X759 
UniProtKBP46846RecName: Full=Protein GntX;
InterProP46846 
PFAMP46846 
ProdomP46846 
UniProtKBQ2M778RecName: Full=Protein GntX;
InterProQ2M778 
PFAMQ2M778 
ProdomQ2M778 
UniProtKBC4ZVW2SubName: Full=Gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system;
InterProC4ZVW2 
PFAMC4ZVW2 
ProdomC4ZVW2 
UniProtKBS0TUP5SubName: Full=Protein GntX;
InterProS0TUP5 
PFAMS0TUP5 
ProdomS0TUP5 
UniProtKBC9QWM0SubName: Full=ComF family protein;SubName: Full=GntX;
InterProC9QWM0 
PFAMC9QWM0 
ProdomC9QWM0 
UniProtKBN4DRK2SubName: Full=ComF family protein;
InterProN4DRK2 
PFAMN4DRK2 
ProdomN4DRK2 
UniProtKBN3PDD0SubName: Full=ComF family protein;
InterProN3PDD0 
PFAMN3PDD0 
ProdomN3PDD0 
UniProtKBM8RZ47SubName: Full=ComF family protein;
InterProM8RZ47 
PFAMM8RZ47 
ProdomM8RZ47 
UniProtKBM8VPR5SubName: Full=ComF family protein;
InterProM8VPR5 
PFAMM8VPR5 
ProdomM8VPR5 
UniProtKBM9BDS4SubName: Full=ComF family protein;
InterProM9BDS4 
PFAMM9BDS4 
ProdomM9BDS4 
UniProtKBM9EHT5SubName: Full=ComF family protein {ECO:0000313|EMBL:EMW92792.1};
InterProM9EHT5 
PFAMM9EHT5 
ProdomM9EHT5 
UniProtKBM9JBM4SubName: Full=ComF family protein;
InterProM9JBM4 
PFAMM9JBM4 
ProdomM9JBM4 
UniProtKBM9L099SubName: Full=ComF family protein;
InterProM9L099 
PFAMM9L099 
ProdomM9L099 
UniProtKBN3FSK4SubName: Full=ComF family protein;
InterProN3FSK4 
PFAMN3FSK4 
ProdomN3FSK4 
UniProtKBN3FYV8SubName: Full=ComF family protein;
InterProN3FYV8 
PFAMN3FYV8 
ProdomN3FYV8 
UniProtKBN3GGL9SubName: Full=ComF family protein;
InterProN3GGL9 
PFAMN3GGL9 
ProdomN3GGL9 
UniProtKBN3HED7SubName: Full=ComF family protein;
InterProN3HED7 
PFAMN3HED7 
ProdomN3HED7 
UniProtKBC6EFG1SubName: Full=ComF family protein {ECO:0000313|EMBL:ACT27404.1};
InterProC6EFG1 
PFAMC6EFG1 
ProdomC6EFG1 
UniProtKBH4WGT5SubName: Full=ComF family protein;
InterProH4WGT5 
PFAMH4WGT5 
ProdomH4WGT5 
UniProtKBL3R948SubName: Full=Protein GntX;
InterProL3R948 
PFAML3R948 
ProdomL3R948 
UniProtKBL4NH35SubName: Full=Protein GntX;
InterProL4NH35 
PFAML4NH35 
ProdomL4NH35 
UniProtKBE3PLL9SubName: Full=Putative competence protein {ECO:0000313|EMBL:CBJ03164.1};
InterProE3PLL9 
PFAME3PLL9 
ProdomE3PLL9 
UniProtKBM8QU08SubName: Full=ComF family protein;
InterProM8QU08 
PFAMM8QU08 
ProdomM8QU08 
UniProtKBF9QZU1SubName: Full=DNA utilization protein GntX;
InterProF9QZU1 
PFAMF9QZU1 
ProdomF9QZU1 
UniProtKBG2A5D5SubName: Full=Protein gntX;
InterProG2A5D5 
PFAMG2A5D5 
ProdomG2A5D5 
UniProtKBN3N329SubName: Full=ComF family protein;
InterProN3N329 
PFAMN3N329 
ProdomN3N329 
UniProtKBN3KQC5SubName: Full=ComF family protein;
InterProN3KQC5 
PFAMN3KQC5 
ProdomN3KQC5 
UniProtKBI2I395SubName: Full=DNA utilization protein GntX;
InterProI2I395 
PFAMI2I395 
ProdomI2I395 
UniProtKBS0X9S2SubName: Full=Protein GntX;
InterProS0X9S2 
PFAMS0X9S2 
ProdomS0X9S2 
UniProtKBK3IGA4SubName: Full=Putative amidophosphoribosyltransferase;
InterProK3IGA4 
PFAMK3IGA4 
ProdomK3IGA4 
UniProtKBS1ECJ9SubName: Full=Protein GntX;
InterProS1ECJ9 
PFAMS1ECJ9 
ProdomS1ECJ9 
UniProtKBI2QWA4SubName: Full=Protein GntX;
InterProI2QWA4 
PFAMI2QWA4 
ProdomI2QWA4 
UniProtKBG2F484SubName: Full=DNA utilization protein GntX;
InterProG2F484 
PFAMG2F484 
ProdomG2F484 
UniProtKBI2PIX4SubName: Full=Protein GntX;
InterProI2PIX4 
PFAMI2PIX4 
ProdomI2PIX4 
UniProtKBL3ZJV5SubName: Full=Protein GntX;
InterProL3ZJV5 
PFAML3ZJV5 
ProdomL3ZJV5 
UniProtKBN4D4N6SubName: Full=ComF family protein;
InterProN4D4N6 
PFAMN4D4N6 
ProdomN4D4N6 
UniProtKBN4PWC2SubName: Full=ComF family protein;
InterProN4PWC2 
PFAMN4PWC2 
ProdomN4PWC2 
UniProtKBI4TNR8SubName: Full=Gluconate periplasmic binding protein;
InterProI4TNR8 
PFAMI4TNR8 
ProdomI4TNR8 
UniProtKBD8BVW4SubName: Full=ComF family protein {ECO:0000313|EMBL:EFI89203.1};
InterProD8BVW4 
PFAMD8BVW4 
ProdomD8BVW4 
UniProtKBM2MFD9SubName: Full=DNA utilization protein GntX;
InterProM2MFD9 
PFAMM2MFD9 
ProdomM2MFD9 
UniProtKBN2KCU2SubName: Full=ComF family protein;
InterProN2KCU2 
PFAMN2KCU2 
ProdomN2KCU2 
UniProtKBN4E2N3SubName: Full=ComF family protein;
InterProN4E2N3 
PFAMN4E2N3 
ProdomN4E2N3 
UniProtKBI2X5C1SubName: Full=ComF family protein {ECO:0000313|EMBL:EII44191.1};
InterProI2X5C1 
PFAMI2X5C1 
ProdomI2X5C1 
UniProtKBI2YPT6SubName: Full=ComF family protein;
InterProI2YPT6 
PFAMI2YPT6 
ProdomI2YPT6 
UniProtKBN4K157SubName: Full=ComF family protein;
InterProN4K157 
PFAMN4K157 
ProdomN4K157 
UniProtKBN2FMA5SubName: Full=ComF family protein;
InterProN2FMA5 
PFAMN2FMA5 
ProdomN2FMA5 
UniProtKBG2B0Q4SubName: Full=Protein gntX;
InterProG2B0Q4 
PFAMG2B0Q4 
ProdomG2B0Q4 
UniProtKBG2CRF4SubName: Full=Protein gntX;
InterProG2CRF4 
PFAMG2CRF4 
ProdomG2CRF4 
UniProtKBN3PRU1SubName: Full=ComF family protein;
InterProN3PRU1 
PFAMN3PRU1 
ProdomN3PRU1 
UniProtKBH0Q7F5SubName: Full=Gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system;
InterProH0Q7F5 
PFAMH0Q7F5 
ProdomH0Q7F5 
UniProtKBH4UQC6SubName: Full=ComF family protein {ECO:0000313|EMBL:EHV53901.1};
InterProH4UQC6 
PFAMH4UQC6 
ProdomH4UQC6 
UniProtKBN3I2P4SubName: Full=ComF family protein;
InterProN3I2P4 
PFAMN3I2P4 
ProdomN3I2P4 
UniProtKBN4SRA6SubName: Full=ComF family protein;
InterProN4SRA6 
PFAMN4SRA6 
ProdomN4SRA6 
UniProtKBI2VLT2SubName: Full=ComF family protein;
InterProI2VLT2 
PFAMI2VLT2 
ProdomI2VLT2 
UniProtKBN4KIM3SubName: Full=ComF family protein;
InterProN4KIM3 
PFAMN4KIM3 
ProdomN4KIM3 
UniProtKBG0F782SubName: Full=Protein gntX {ECO:0000313|EMBL:AEJ58811.1};
InterProG0F782 
PFAMG0F782 
ProdomG0F782 
UniProtKBM9FD56SubName: Full=ComF family protein;
InterProM9FD56 
PFAMM9FD56 
ProdomM9FD56 
UniProtKBK5HG77SubName: Full=ComF family protein;
InterProK5HG77 
PFAMK5HG77 
ProdomK5HG77 
UniProtKBL3LZF3SubName: Full=Protein GntX;
InterProL3LZF3 
PFAML3LZF3 
ProdomL3LZF3 
UniProtKBL3TIV7SubName: Full=Protein GntX;
InterProL3TIV7 
PFAML3TIV7 
ProdomL3TIV7 
UniProtKBL3V860SubName: Full=Protein GntX;
InterProL3V860 
PFAML3V860 
ProdomL3V860 
UniProtKBD8EG76SubName: Full=ComF family protein {ECO:0000313|EMBL:EFK53342.1};
InterProD8EG76 
PFAMD8EG76 
ProdomD8EG76 
UniProtKBL3WN49SubName: Full=Protein GntX;
InterProL3WN49 
PFAML3WN49 
ProdomL3WN49 
UniProtKBL4W7Z7SubName: Full=Protein GntX;
InterProL4W7Z7 
PFAML4W7Z7 
ProdomL4W7Z7 
UniProtKBE6BBY5SubName: Full=Protein gntX {ECO:0000313|EMBL:EFU95321.1};
InterProE6BBY5 
PFAME6BBY5 
ProdomE6BBY5 
UniProtKBE9WMC9SubName: Full=ComF family protein;
InterProE9WMC9 
PFAME9WMC9 
ProdomE9WMC9 
UniProtKBL4NTX5SubName: Full=Protein GntX;
InterProL4NTX5 
PFAML4NTX5 
ProdomL4NTX5 
UniProtKBS1A0I2SubName: Full=Protein GntX;
InterProS1A0I2 
PFAMS1A0I2 
ProdomS1A0I2