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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link A0A094VVD8
Original Database ID ref NP_417117.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation subname: full=uncharacterized
protein {eco:0000313|embl:ako58127.1};
Sequence Length 538

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region102-250
Protein Length538
Template PDB Code3tmkC
Template Region2-175
Sequence Identity31%
E-Value0.069
GA3410.26
MPQS0.372752
z-DOPE0.82
TSVMod MethodMTALL
TSVMod RMSD9.179
TSVMod NO350.279
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3tmkcrystal structure of yeast thymidylate kinase complexed with the bisubstrate inhibitor tp5a at 2.0 a resolution: implications for catalysis and azt activation ; EC: 2.7.4.9 ; PFAM: PF02223 ; SCOP: 31922
DBALI3tmkC 
CATH3.40.50.300 Domain: 3tmkC00 P-loop containing nucleotide triphosphate hydrolases (80%)
JenaImageLibrary3tmk 
Target Sequence
UniProtKBI0ZWN9SubName: Full=Uncharacterized protein;
InterProI0ZWN9 
PFAMI0ZWN9 
ProdomI0ZWN9 
UniProtKBF9QWJ2SubName: Full=Putative uncharacterized protein;
InterProF9QWJ2 
PFAMF9QWJ2 
ProdomF9QWJ2 
UniProtKBM2NYE9SubName: Full=Uncharacterized protein;
InterProM2NYE9 
PFAMM2NYE9 
ProdomM2NYE9 
UniProtKBC9R0Z9SubName: Full=Uncharacterized protein;
InterProC9R0Z9 
PFAMC9R0Z9 
ProdomC9R0Z9 
UniProtKBC4ZYP4SubName: Full=CP4-57 prophage; predicted protein;
InterProC4ZYP4 
PFAMC4ZYP4 
ProdomC4ZYP4 
UniProtKBP52127RecName: Full=Uncharacterized protein YfjL;
InterProP52127 
PFAMP52127 
ProdomP52127 
UniProtKBB1XBU6SubName: Full=CP4-57 prophage; predicted protein;
InterProB1XBU6 
PFAMB1XBU6 
ProdomB1XBU6 
UniProtKBQ2MAE3RecName: Full=Uncharacterized protein YfjL;
InterProQ2MAE3 
PFAMQ2MAE3 
ProdomQ2MAE3 
UniProtKBS1IBN1SubName: Full=Phage protein {ECO:0000313|EMBL:EOW17066.1};
InterProS1IBN1 
PFAMS1IBN1 
ProdomS1IBN1 
UniProtKBA0A094VVD8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKO58127.1};
InterProA0A094VVD8 
PFAMA0A094VVD8 
ProdomA0A094VVD8 
UniProtKBG2F779SubName: Full=Putative uncharacterized protein;
InterProG2F779 
PFAMG2F779 
ProdomG2F779 
UniProtKBC4ZYP4SubName: Full=CP4-57 prophage; predicted protein;
InterProC4ZYP4 
PFAMC4ZYP4 
ProdomC4ZYP4 
UniProtKBB1XBU6SubName: Full=CP4-57 prophage; predicted protein;
InterProB1XBU6 
PFAMB1XBU6 
ProdomB1XBU6 
UniProtKBC9R0Z9SubName: Full=Putative uncharacterized protein yfjL;
InterProC9R0Z9 
PFAMC9R0Z9 
ProdomC9R0Z9 
UniProtKBA0A8F8DP85SubName: Full=Anti-bacteriophage protein AbpA {ECO:0000313|EMBL:QXZ37955.1}
InterProA0A8F8DP85 
PFAMA0A8F8DP85 
ProdomA0A8F8DP85 
UniProtKBG2F779SubName: Full=Putative uncharacterized protein;
InterProG2F779 
PFAMG2F779 
ProdomG2F779 
UniProtKBI0ZWN9SubName: Full=Uncharacterized protein;
InterProI0ZWN9 
PFAMI0ZWN9 
ProdomI0ZWN9 
UniProtKBF9QWJ2SubName: Full=Putative uncharacterized protein;
InterProF9QWJ2 
PFAMF9QWJ2 
ProdomF9QWJ2 
UniProtKBA0A5Q3TD80SubName: Full=DUF4297 domain-containing protein {ECO:0000313|EMBL:QGL41910.1}
InterProA0A5Q3TD80 
PFAMA0A5Q3TD80 
ProdomA0A5Q3TD80 
UniProtKBA0A4C4ZHR0SubName: Full=CP4-57 prophage protein {ECO:0000313|EMBL:VTQ20993.1}SubName: Full=DUF4297 domain-containing protein {ECO:0000313|EMBL:QGF37196.1}
InterProA0A4C4ZHR0 
PFAMA0A4C4ZHR0 
ProdomA0A4C4ZHR0 
UniProtKBQ2MAE3Hypothetical protein yfjL
InterProQ2MAE3 
PFAMQ2MAE3 
ProdomQ2MAE3 
UniProtKBA0A8F9HD50SubName: Full=Anti-bacteriophage protein AbpA {ECO:0000313|EMBL:QYE26734.1}
InterProA0A8F9HD50 
PFAMA0A8F9HD50 
ProdomA0A8F9HD50 
UniProtKBP52127RecName: Full=Uncharacterized protein YfjL;
InterProP52127 
PFAMP52127 
ProdomP52127 
UniProtKBP52127.1YFJL_ECOLI RecName: Full=Uncharacterized protein yfjL
InterProP52127.1 
PFAMP52127.1 
ProdomP52127.1 
UniProtKBQ2MAE3RecName: Full=Uncharacterized protein YfjL;
InterProQ2MAE3 
PFAMQ2MAE3 
ProdomQ2MAE3 
RefSeqAP_003207.1 hypothetical protein [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_002927582.1 CP4-57 prophage; hypothetical protein [Escherichia coli BW2952]
RefSeqNP_417117.1 CP4-57 prophage; predicted protein [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001731548.1 CP4-57 prophage; hypothetical protein [Escherichia coli str. K-12 substr. DH10B]
GenPept899723564hypothetical protein ADS71_13535
GenPept899727919hypothetical protein ADZ27_13535
GenPept899732368hypothetical protein ADZ28_13535
GenPept932860698hypothetical protein BN1843_31960
GenPept315137244CP4-57 prophage; hypothetical protein
GenPept89109427 hypothetical protein [Escherichia coli str. K-12 substr. W3110]
GenPept85675491hypothetical protein
GenPept732683510hypothetical protein EO53_04640
GenPept731471561CP4-57 prophage; putative protein
GenPept730583832CP4-57 prophage; putative protein
GenPept687677756CP4-57 prophage; predicted protein
GenPept687673471CP4-57 prophage; predicted protein
GenPept682120098CP4-57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein
GenPept664684922hypothetical protein HQ24_13115
GenPept557274108CP4-57 prophage protein
GenPept549814042CP4-57 prophage; putative protein
GenPept260448300Domain of unknown function DUF1837
GenPept238901786 CP4-57 prophage; hypothetical protein [Escherichia coli BW2952]
GenPept238860631CP4-57 prophage; predicted protein
GenPept1788981CP4-57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein
GenPept1723624YFJL_ECOLI RecName: Full=Uncharacterized protein yfjL
GenPept170082228 CP4-57 prophage; hypothetical protein [Escherichia coli str. K-12 substr. DH10B]
GenPept169890063CP4-57 prophage; predicted protein
GenPept16130546 CP4-57 prophage; predicted protein [Escherichia coli str. K-12 substr. MG1655]
GenPept7452143T08640 hypothetical protein b2628 - Escherichia coli (strain K-12)
GenPept802136007CP4-57 prophage; putative protein
GenPept808701324hypothetical protein SH05_17395
GenPept817592432CP4-57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein
GenPept817588292CP4-57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein
GenPept817584151CP4-57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein
GenPept817580012CP4-57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein
GenPept817575870CP4-57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein
GenPept808735947hypothetical protein SF31_17640
GenPept808731518hypothetical protein SH07_17285
GenPept808723202hypothetical protein SH04_17280
GenPept808718830hypothetical protein SH06_17595
GenPept808714420hypothetical protein SH03_17290
GenPept808710058hypothetical protein SH08_17390
GenPept808705698hypothetical protein SH02_17350
GenPept1033123ORF_f538
GenBankAAA79797.1 ORF_f538 [Escherichia coli str. K-12 substr. MG1655]
GenBankAAC75676.1 CP4-57 prophage; predicted protein [Escherichia coli str. K-12 substr. MG1655]
GenBankACB03770.1 CP4-57 prophage; predicted protein [Escherichia coli str. K-12 substr. DH10B]
GenBankACR62629.1 CP4-57 prophage; predicted protein [Escherichia coli BW2952]
GenBankACX38722.1 Domain of unknown function DUF1837 [Escherichia coli DH1]