University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P54901.3
Original Database ID ref NP_417030.2
Organism Escherichia coli, Shigella boydii, etc.
Annotation csie_ecoli recname: full=stationary
phase-inducible protein csie
Sequence Length 426

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region9-423
Protein Length426
Template PDB Code3sqnA
Template Region85-477
Sequence Identity15%
E-Value0
GA3411
MPQS1.09178
z-DOPE0.19
TSVMod MethodMSALL
TSVMod RMSD7.015
TSVMod NO350.492
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3sqn
DBALI3sqnA 
JenaImageLibrary3sqn 
Target Sequence
UniProtKBH5C9B7SubName: Full=PRD domain protein;
InterProH5C9B7 
PFAMH5C9B7 
ProdomH5C9B7 
UniProtKBA0A071AGX1SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDY59277.1};
InterProA0A071AGX1 
PFAMA0A071AGX1 
ProdomA0A071AGX1 
UniProtKBA0A071C2N3SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDY90436.1};
InterProA0A071C2N3 
PFAMA0A071C2N3 
ProdomA0A071C2N3 
UniProtKBA0A073GQY1SubName: Full=PRD domain protein {ECO:0000313|EMBL:KEJ67461.1};
InterProA0A073GQY1 
PFAMA0A073GQY1 
ProdomA0A073GQY1 
UniProtKBA0A079DGW1SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDY19727.1};
InterProA0A079DGW1 
PFAMA0A079DGW1 
ProdomA0A079DGW1 
UniProtKBA0A079FGX5SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDY57487.1};
InterProA0A079FGX5 
PFAMA0A079FGX5 
ProdomA0A079FGX5 
UniProtKBA0A079H2M4SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDY97707.1};
InterProA0A079H2M4 
PFAMA0A079H2M4 
ProdomA0A079H2M4 
UniProtKBA0A0A8UBY2SubName: Full=Stationary phase inducible protein {ECO:0000313|EMBL:CEK06314.1};
InterProA0A0A8UBY2 
PFAMA0A0A8UBY2 
ProdomA0A0A8UBY2 
UniProtKBA0A0E0U2Y3SubName: Full=Stationary phase-inducible protein CsiE {ECO:0000313|EMBL:AEE57744.1};
InterProA0A0E0U2Y3 
PFAMA0A0E0U2Y3 
ProdomA0A0E0U2Y3 
UniProtKBA0A0E2A493SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EIL42352.1};
InterProA0A0E2A493 
PFAMA0A0E2A493 
ProdomA0A0E2A493 
UniProtKBA0A0E3MWU6SubName: Full=Stationary phase-inducible protein CsiE {ECO:0000313|EMBL:AKA91633.1};
InterProA0A0E3MWU6 
PFAMA0A0E3MWU6 
ProdomA0A0E3MWU6 
UniProtKBA0A070SRI9SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDX20346.1};
InterProA0A070SRI9 
PFAMA0A070SRI9 
ProdomA0A070SRI9 
UniProtKBA0A037YNS9SubName: Full=Stationary phase inducible protein {ECO:0000313|EMBL:KLX33900.1};SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:AIZ88115.1};SubName: Full=Uncharacterized protein
InterProA0A037YNS9 
PFAMA0A037YNS9 
ProdomA0A037YNS9 
UniProtKBH4VJM6SubName: Full=PRD domain protein;
InterProH4VJM6 
PFAMH4VJM6 
ProdomH4VJM6 
UniProtKBB3BJ26SubName: Full=Stationary phase inducible protein CsiE;
InterProB3BJ26 
PFAMB3BJ26 
ProdomB3BJ26 
UniProtKBB5Z109SubName: Full=Stationary phase inducible protein CsiE;
InterProB5Z109 
PFAMB5Z109 
ProdomB5Z109 
UniProtKBH5DMJ4SubName: Full=PRD domain protein;
InterProH5DMJ4 
PFAMH5DMJ4 
ProdomH5DMJ4 
UniProtKBH5EM75SubName: Full=PRD domain protein;
InterProH5EM75 
PFAMH5EM75 
ProdomH5EM75 
UniProtKBC6UQU0SubName: Full=Stationary phase inducible protein;
InterProC6UQU0 
PFAMC6UQU0 
ProdomC6UQU0 
UniProtKBC8TVN0SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:BAI26780.1};
InterProC8TVN0 
PFAMC8TVN0 
ProdomC8TVN0 
UniProtKBH9UVD4SubName: Full=Transcriptional antiterminator {ECO:0000313|EMBL:AFG41477.1};
InterProH9UVD4 
PFAMH9UVD4 
ProdomH9UVD4 
UniProtKBC9QPN8SubName: Full=Stationary phase inducible protein;SubName: Full=Transcriptional antiterminator, BglG;
InterProC9QPN8 
PFAMC9QPN8 
ProdomC9QPN8 
UniProtKBH6MDR4SubName: Full=Stationary phase inducible protein CsiE;
InterProH6MDR4 
PFAMH6MDR4 
ProdomH6MDR4 
UniProtKBD8BUU9SubName: Full=PRD domain protein {ECO:0000313|EMBL:EFI89574.1};
InterProD8BUU9 
PFAMD8BUU9 
ProdomD8BUU9 
UniProtKBA0A0G3I0D2SubName: Full=Stationary phase inducible protein {ECO:0000313|EMBL:AKK18440.1};
InterProA0A0G3I0D2 
PFAMA0A0G3I0D2 
ProdomA0A0G3I0D2 
UniProtKBA0A0H3PW60SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EDU90699.1};
InterProA0A0H3PW60 
PFAMA0A0H3PW60 
ProdomA0A0H3PW60 
UniProtKBH4U5T4SubName: Full=PRD domain protein;
InterProH4U5T4 
PFAMH4U5T4 
ProdomH4U5T4 
UniProtKBH4RIY2SubName: Full=PRD domain protein;
InterProH4RIY2 
PFAMH4RIY2 
ProdomH4RIY2 
UniProtKBH0Q8Z2SubName: Full=Stationary phase inducible protein;
InterProH0Q8Z2 
PFAMH0Q8Z2 
ProdomH0Q8Z2 
UniProtKBE2K5Q1SubName: Full=Stationary phase inducible protein CsiE;
InterProE2K5Q1 
PFAME2K5Q1 
ProdomE2K5Q1 
UniProtKBH4ZHL9SubName: Full=PRD domain protein;
InterProH4ZHL9 
PFAMH4ZHL9 
ProdomH4ZHL9 
UniProtKBH5BD91SubName: Full=PRD domain protein;
InterProH5BD91 
PFAMH5BD91 
ProdomH5BD91 
UniProtKBB2PEF6SubName: Full=Stationary phase inducible protein CsiE;
InterProB2PEF6 
PFAMB2PEF6 
ProdomB2PEF6 
UniProtKBA0A023Z1U9SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:AHY71854.1};
InterProA0A023Z1U9 
PFAMA0A023Z1U9 
ProdomA0A023Z1U9 
UniProtKBA0A024KYM0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDP70000.1};
InterProA0A024KYM0 
PFAMA0A024KYM0 
ProdomA0A024KYM0 
UniProtKBA0A025CDZ1SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EYV13633.1};
InterProA0A025CDZ1 
PFAMA0A025CDZ1 
ProdomA0A025CDZ1 
UniProtKBH4RZC1SubName: Full=PRD domain protein;
InterProH4RZC1 
PFAMH4RZC1 
ProdomH4RZC1 
UniProtKBH4SEH8SubName: Full=PRD domain protein;
InterProH4SEH8 
PFAMH4SEH8 
ProdomH4SEH8 
UniProtKBH4LVL2SubName: Full=PRD domain protein;
InterProH4LVL2 
PFAMH4LVL2 
ProdomH4LVL2 
UniProtKBE8J4F6SubName: Full=Stationary phase inducible protein CsiE;
InterProE8J4F6 
PFAME8J4F6 
ProdomE8J4F6 
UniProtKBF1XMJ5SubName: Full=Stationary phase inducible protein CsiE;
InterProF1XMJ5 
PFAMF1XMJ5 
ProdomF1XMJ5 
UniProtKBE8H522SubName: Full=Stationary phase inducible protein CsiE;
InterProE8H522 
PFAME8H522 
ProdomE8H522 
UniProtKBG2AXV0SubName: Full=Stationary phase-inducible protein csiE;
InterProG2AXV0 
PFAMG2AXV0 
ProdomG2AXV0 
UniProtKBG2A0A0SubName: Full=Stationary phase-inducible protein csiE;
InterProG2A0A0 
PFAMG2A0A0 
ProdomG2A0A0 
UniProtKBG2CNL0SubName: Full=Stationary phase-inducible protein csiE;
InterProG2CNL0 
PFAMG2CNL0 
ProdomG2CNL0 
UniProtKBG0FG05SubName: Full=Stationary phase-inducible protein csiE {ECO:0000313|EMBL:AEJ57757.1};
InterProG0FG05 
PFAMG0FG05 
ProdomG0FG05 
UniProtKBE7TVK9SubName: Full=Stationary phase inducible protein CsiE;
InterProE7TVK9 
PFAME7TVK9 
ProdomE7TVK9 
UniProtKBH4PLY8SubName: Full=PRD domain protein;
InterProH4PLY8 
PFAMH4PLY8 
ProdomH4PLY8 
UniProtKBH4MUZ1SubName: Full=PRD domain protein;
InterProH4MUZ1 
PFAMH4MUZ1 
ProdomH4MUZ1 
UniProtKBA0A025FKI1SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EYV52959.1};
InterProA0A025FKI1 
PFAMA0A025FKI1 
ProdomA0A025FKI1 
UniProtKBB3AN32SubName: Full=Stationary phase inducible protein CsiE;
InterProB3AN32 
PFAMB3AN32 
ProdomB3AN32 
UniProtKBA0A026HDR5SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EYY79909.1};
InterProA0A026HDR5 
PFAMA0A026HDR5 
ProdomA0A026HDR5 
UniProtKBC8UEA3SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:BAI37075.1};
InterProC8UEA3 
PFAMC8UEA3 
ProdomC8UEA3 
UniProtKBA0A028E2P8SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EZE54130.1};
InterProA0A028E2P8 
PFAMA0A028E2P8 
ProdomA0A028E2P8 
UniProtKBA0A071CHZ9SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDZ18500.1};
InterProA0A071CHZ9 
PFAMA0A071CHZ9 
ProdomA0A071CHZ9 
UniProtKBA0A080GJX7SubName: Full=PRD domain protein {ECO:0000313|EMBL:KEN89537.1};
InterProA0A080GJX7 
PFAMA0A080GJX7 
ProdomA0A080GJX7 
UniProtKBA0A0F6C7L9SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:AFJ30225.1};
InterProA0A0F6C7L9 
PFAMA0A0F6C7L9 
ProdomA0A0F6C7L9 
UniProtKBF9QVJ0SubName: Full=Stationary phase inducible protein CsiE;
InterProF9QVJ0 
PFAMF9QVJ0 
ProdomF9QVJ0 
UniProtKBG2F0T9SubName: Full=Stationary phase inducible protein CsiE;
InterProG2F0T9 
PFAMG2F0T9 
ProdomG2F0T9 
UniProtKBH4R2H2SubName: Full=PRD domain protein;
InterProH4R2H2 
PFAMH4R2H2 
ProdomH4R2H2 
UniProtKBH4UMH5SubName: Full=PRD domain protein {ECO:0000313|EMBL:EHV57133.1};
InterProH4UMH5 
PFAMH4UMH5 
ProdomH4UMH5 
UniProtKBH5AGH3SubName: Full=PRD domain protein;
InterProH5AGH3 
PFAMH5AGH3 
ProdomH5AGH3 
UniProtKBH5G055SubName: Full=PRD domain protein;
InterProH5G055 
PFAMH5G055 
ProdomH5G055 
UniProtKBH5D5Z3SubName: Full=PRD domain protein;
InterProH5D5Z3 
PFAMH5D5Z3 
ProdomH5D5Z3 
UniProtKBE2JQU1SubName: Full=Stationary phase inducible protein CsiE;
InterProE2JQU1 
PFAME2JQU1 
ProdomE2JQU1 
UniProtKBA0A027TYD0SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EZD30403.1};
InterProA0A027TYD0 
PFAMA0A027TYD0 
ProdomA0A027TYD0 
UniProtKBH5A018SubName: Full=PRD domain protein {ECO:0000313|EMBL:EHW15761.1};
InterProH5A018 
PFAMH5A018 
ProdomH5A018 
UniProtKBA0A027YTW6SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EZD89759.1};
InterProA0A027YTW6 
PFAMA0A027YTW6 
ProdomA0A027YTW6 
UniProtKBE8IPB6SubName: Full=Stationary phase inducible protein CsiE;
InterProE8IPB6 
PFAME8IPB6 
ProdomE8IPB6 
UniProtKBH4YZH0SubName: Full=PRD domain protein;
InterProH4YZH0 
PFAMH4YZH0 
ProdomH4YZH0 
UniProtKBB6ZWT4SubName: Full=Stationary phase inducible protein CsiE;
InterProB6ZWT4 
PFAMB6ZWT4 
ProdomB6ZWT4 
UniProtKBA0A028ATF6SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:EZE14190.1};
InterProA0A028ATF6 
PFAMA0A028ATF6 
ProdomA0A028ATF6 
UniProtKBA0A080EGC3SubName: Full=PRD domain protein {ECO:0000313|EMBL:KEN47648.1};
InterProA0A080EGC3 
PFAMA0A080EGC3 
ProdomA0A080EGC3 
UniProtKBF4M8G1SubName: Full=Stationary phase-inducible protein CsiE;
InterProF4M8G1 
PFAMF4M8G1 
ProdomF4M8G1 
UniProtKBH4QLB1SubName: Full=PRD domain protein;
InterProH4QLB1 
PFAMH4QLB1 
ProdomH4QLB1 
UniProtKBB3ACL2SubName: Full=Stationary phase inducible protein CsiE;
InterProB3ACL2 
PFAMB3ACL2 
ProdomB3ACL2 
UniProtKBB3B0L6SubName: Full=Stationary phase inducible protein CsiE;
InterProB3B0L6 
PFAMB3B0L6 
ProdomB3B0L6 
UniProtKBF1Y8N2SubName: Full=Stationary phase inducible protein CsiE;
InterProF1Y8N2 
PFAMF1Y8N2 
ProdomF1Y8N2 
UniProtKBG2BAV4SubName: Full=Stationary phase-inducible protein csiE;
InterProG2BAV4 
PFAMG2BAV4 
ProdomG2BAV4 
UniProtKBG2C7G5SubName: Full=Stationary phase-inducible protein csiE;
InterProG2C7G5 
PFAMG2C7G5 
ProdomG2C7G5 
UniProtKBH4NAC9SubName: Full=PRD domain protein;
InterProH4NAC9 
PFAMH4NAC9 
ProdomH4NAC9 
UniProtKBH4Q4D5SubName: Full=PRD domain protein;
InterProH4Q4D5 
PFAMH4Q4D5 
ProdomH4Q4D5 
UniProtKBH4TAY5SubName: Full=PRD domain protein;
InterProH4TAY5 
PFAMH4TAY5 
ProdomH4TAY5 
UniProtKBH4TRJ1SubName: Full=PRD domain protein;
InterProH4TRJ1 
PFAMH4TRJ1 
ProdomH4TRJ1 
UniProtKBE2KQZ7SubName: Full=Stationary phase inducible protein CsiE;
InterProE2KQZ7 
PFAME2KQZ7 
ProdomE2KQZ7 
UniProtKBB1XB10SubName: Full=Stationary phase inducible protein;
InterProB1XB10 
PFAMB1XB10 
ProdomB1XB10 
UniProtKBH4X7U5SubName: Full=PRD domain protein;
InterProH4X7U5 
PFAMH4X7U5 
ProdomH4X7U5 
UniProtKBA0A0H4S0T5SubName: Full=Stationary phase inducible protein {ECO:0000313|EMBL:AKP85346.1};
InterProA0A0H4S0T5 
PFAMA0A0H4S0T5 
ProdomA0A0H4S0T5 
UniProtKBA0A0F6FAQ2SubName: Full=Stationary phase inducible protein CsiE {ECO:0000313|EMBL:AJA27492.1};
InterProA0A0F6FAQ2 
PFAMA0A0F6FAQ2 
ProdomA0A0F6FAQ2 
UniProtKBA0A0E1M027SubName: Full=Stationary phase inducible protein {ECO:0000313|EMBL:AJF57391.1};
InterProA0A0E1M027 
PFAMA0A0E1M027 
ProdomA0A0E1M027 
UniProtKBH4WE45SubName: Full=PRD domain protein;
InterProH4WE45 
PFAMH4WE45 
ProdomH4WE45 
UniProtKBC4ZXB0SubName: Full=Stationary phase inducible protein;
InterProC4ZXB0 
PFAMC4ZXB0 
ProdomC4ZXB0 
UniProtKBI1ZYV1SubName: Full=Stationary phase inducible protein CsiE;
InterProI1ZYV1 
PFAMI1ZYV1 
ProdomI1ZYV1 
UniProtKBD3QN26SubName: Full=Transcriptional antiterminator {ECO:0000313|EMBL:ADD57594.1};
InterProD3QN26 
PFAMD3QN26 
ProdomD3QN26 
UniProtKBA0A029LG35SubName: Full=PRD domain protein {ECO:0000313|EMBL:EZJ84438.1};
InterProA0A029LG35 
PFAMA0A029LG35 
ProdomA0A029LG35 
UniProtKBA0A070THQ1SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDX25568.1};
InterProA0A070THQ1 
PFAMA0A070THQ1 
ProdomA0A070THQ1 
UniProtKBA0A071D3M2SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDZ34017.1};
InterProA0A071D3M2 
PFAMA0A071D3M2 
ProdomA0A071D3M2 
UniProtKBA0A079F711SubName: Full=PRD domain protein {ECO:0000313|EMBL:KDY51701.1};
InterProA0A079F711 
PFAMA0A079F711 
ProdomA0A079F711 
UniProtKBA0A080IN45SubName: Full=PRD domain protein {ECO:0000313|EMBL:KEO31304.1};
InterProA0A080IN45 
PFAMA0A080IN45 
ProdomA0A080IN45 
UniProtKBH5BU31SubName: Full=PRD domain protein;
InterProH5BU31 
PFAMH5BU31 
ProdomH5BU31