University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A029KWI9
Original Database ID ref NP_415955.2
Organism Escherichia coli, Shigella boydii, etc.
Annotation subname: full=antitoxin hicb {eco:0000313|embl:ezj77236.1};
Sequence Length 138

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region1-134
Protein Length138
Template PDB Code4p7dA
Template Region1-134
Sequence Identity15%
E-Value0
GA3410.09
MPQS1.01161
z-DOPE0.58
TSVMod MethodMSALL
TSVMod RMSD11.544
TSVMod NO350.204
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB4p7d
DBALI4p7dA 
JenaImageLibrary4p7d 
Target Sequence
UniProtKBI5UGJ2SubName: Full=Uncharacterized protein;
InterProI5UGJ2 
PFAMI5UGJ2 
ProdomI5UGJ2 
UniProtKBE9XYT8SubName: Full=Helix-turn-helix protein;
InterProE9XYT8 
PFAME9XYT8 
ProdomE9XYT8 
UniProtKBE9Y9S3SubName: Full=Helix-turn-helix protein {ECO:0000313|EMBL:EGB68826.1};
InterProE9Y9S3 
PFAME9Y9S3 
ProdomE9Y9S3 
UniProtKBG1ZIF7SubName: Full=Helix-turn-helix family protein;
InterProG1ZIF7 
PFAMG1ZIF7 
ProdomG1ZIF7 
UniProtKBG2AEZ0SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EGW92954.1};
InterProG2AEZ0 
PFAMG2AEZ0 
ProdomG2AEZ0 
UniProtKBG2BN93SubName: Full=Helix-turn-helix family protein;
InterProG2BN93 
PFAMG2BN93 
ProdomG2BN93 
UniProtKBG2C3E2SubName: Full=Helix-turn-helix family protein;
InterProG2C3E2 
PFAMG2C3E2 
ProdomG2C3E2 
UniProtKBH4UZZ0SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EHV61151.1};
InterProH4UZZ0 
PFAMH4UZZ0 
ProdomH4UZZ0 
UniProtKBH4VFF0SubName: Full=Antitoxin HicB;
InterProH4VFF0 
PFAMH4VFF0 
ProdomH4VFF0 
UniProtKBH4WQP0SubName: Full=Antitoxin HicB;
InterProH4WQP0 
PFAMH4WQP0 
ProdomH4WQP0 
UniProtKBH4X508SubName: Full=Helix-turn-helix family protein;
InterProH4X508 
PFAMH4X508 
ProdomH4X508 
UniProtKBE7J1U6SubName: Full=Helix-turn-helix family protein;
InterProE7J1U6 
PFAME7J1U6 
ProdomE7J1U6 
UniProtKBE7ISF8SubName: Full=Helix-turn-helix family protein;
InterProE7ISF8 
PFAME7ISF8 
ProdomE7ISF8 
UniProtKBK3BSW1SubName: Full=Uncharacterized protein;
InterProK3BSW1 
PFAMK3BSW1 
ProdomK3BSW1 
UniProtKBI5ULK3SubName: Full=Uncharacterized protein;
InterProI5ULK3 
PFAMI5ULK3 
ProdomI5ULK3 
UniProtKBI5VJ53SubName: Full=Uncharacterized protein;
InterProI5VJ53 
PFAMI5VJ53 
ProdomI5VJ53 
UniProtKBI5WCG4SubName: Full=Uncharacterized protein;
InterProI5WCG4 
PFAMI5WCG4 
ProdomI5WCG4 
UniProtKBI5X2N4SubName: Full=Uncharacterized protein;
InterProI5X2N4 
PFAMI5X2N4 
ProdomI5X2N4 
UniProtKBI5ZT16SubName: Full=Uncharacterized protein;
InterProI5ZT16 
PFAMI5ZT16 
ProdomI5ZT16 
UniProtKBI6EEY0SubName: Full=Antitoxin HicB;
InterProI6EEY0 
PFAMI6EEY0 
ProdomI6EEY0 
UniProtKBI6F5T5SubName: Full=Helix-turn-helix family protein;
InterProI6F5T5 
PFAMI6F5T5 
ProdomI6F5T5 
UniProtKBI6GR58SubName: Full=Helix-turn-helix family protein;
InterProI6GR58 
PFAMI6GR58 
ProdomI6GR58 
UniProtKBK3A3A8SubName: Full=Uncharacterized protein;
InterProK3A3A8 
PFAMK3A3A8 
ProdomK3A3A8 
UniProtKBK3APL5SubName: Full=Uncharacterized protein;
InterProK3APL5 
PFAMK3APL5 
ProdomK3APL5 
UniProtKBH4YVS8SubName: Full=Antitoxin HicB;
InterProH4YVS8 
PFAMH4YVS8 
ProdomH4YVS8 
UniProtKBH4ZVH4SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EHW19205.1};
InterProH4ZVH4 
PFAMH4ZVH4 
ProdomH4ZVH4 
UniProtKBI2V8F6SubName: Full=Uncharacterized protein;
InterProI2V8F6 
PFAMI2V8F6 
ProdomI2V8F6 
UniProtKBI2WFC9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EII23357.1};
InterProI2WFC9 
PFAMI2WFC9 
ProdomI2WFC9 
UniProtKBI2XWM2SubName: Full=Uncharacterized protein;
InterProI2XWM2 
PFAMI2XWM2 
ProdomI2XWM2 
UniProtKBI3ADN9SubName: Full=Uncharacterized protein;
InterProI3ADN9 
PFAMI3ADN9 
ProdomI3ADN9 
UniProtKBI5E1A1SubName: Full=Uncharacterized protein;
InterProI5E1A1 
PFAMI5E1A1 
ProdomI5E1A1 
UniProtKBI5K657SubName: Full=Uncharacterized protein;
InterProI5K657 
PFAMI5K657 
ProdomI5K657 
UniProtKBI5LIS7SubName: Full=Uncharacterized protein;
InterProI5LIS7 
PFAMI5LIS7 
ProdomI5LIS7 
UniProtKBI5LPF7SubName: Full=Uncharacterized protein;
InterProI5LPF7 
PFAMI5LPF7 
ProdomI5LPF7 
UniProtKBI5NI37SubName: Full=Uncharacterized protein;
InterProI5NI37 
PFAMI5NI37 
ProdomI5NI37 
UniProtKBI5RL92SubName: Full=Uncharacterized protein;
InterProI5RL92 
PFAMI5RL92 
ProdomI5RL92 
UniProtKBI2UG54SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIH77180.1};
InterProI2UG54 
PFAMI2UG54 
ProdomI2UG54 
UniProtKBI1B5B0SubName: Full=Toxin-antitoxin system, antitoxin component, HicB family;
InterProI1B5B0 
PFAMI1B5B0 
ProdomI1B5B0 
UniProtKBI0ZRK3SubName: Full=Toxin-antitoxin system, antitoxin component, HicB family;
InterProI0ZRK3 
PFAMI0ZRK3 
ProdomI0ZRK3 
UniProtKBH5ACT9SubName: Full=Helix-turn-helix family protein;
InterProH5ACT9 
PFAMH5ACT9 
ProdomH5ACT9 
UniProtKBH5ATF3SubName: Full=Helix-turn-helix family protein;
InterProH5ATF3 
PFAMH5ATF3 
ProdomH5ATF3 
UniProtKBH5E141SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EHW71184.1};
InterProH5E141 
PFAMH5E141 
ProdomH5E141 
UniProtKBH5EHU8SubName: Full=Helix-turn-helix family protein;
InterProH5EHU8 
PFAMH5EHU8 
ProdomH5EHU8 
UniProtKBH5EYH2SubName: Full=Helix-turn-helix family protein;
InterProH5EYH2 
PFAMH5EYH2 
ProdomH5EYH2 
UniProtKBH5H6M9SubName: Full=Antitoxin HicB;
InterProH5H6M9 
PFAMH5H6M9 
ProdomH5H6M9 
UniProtKBH5I3A6SubName: Full=Antitoxin HicB;
InterProH5I3A6 
PFAMH5I3A6 
ProdomH5I3A6 
UniProtKBH5II92SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:EHX33166.1};
InterProH5II92 
PFAMH5II92 
ProdomH5II92 
UniProtKBH5JH98SubName: Full=Antitoxin HicB;
InterProH5JH98 
PFAMH5JH98 
ProdomH5JH98 
UniProtKBH5MSB0SubName: Full=Antitoxin HicB;
InterProH5MSB0 
PFAMH5MSB0 
ProdomH5MSB0 
UniProtKBI5T6D6SubName: Full=Uncharacterized protein;
InterProI5T6D6 
PFAMI5T6D6 
ProdomI5T6D6 
UniProtKBE7IHQ1SubName: Full=Helix-turn-helix family protein;
InterProE7IHQ1 
PFAME7IHQ1 
ProdomE7IHQ1 
UniProtKBC8U8B4SubName: Full=Predicted DNA-binding transcriptional regulator {ECO:0000313|EMBL:BAI30392.1};
InterProC8U8B4 
PFAMC8U8B4 
ProdomC8U8B4 
UniProtKBG2AUD9SubName: Full=Helix-turn-helix family protein;
InterProG2AUD9 
PFAMG2AUD9 
ProdomG2AUD9 
UniProtKBH4UIS7SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:EHV59477.1};
InterProH4UIS7 
PFAMH4UIS7 
ProdomH4UIS7 
UniProtKBH4TN03SubName: Full=Helix-turn-helix family protein;
InterProH4TN03 
PFAMH4TN03 
ProdomH4TN03 
UniProtKBH5HN66SubName: Full=Antitoxin HicB;
InterProH5HN66 
PFAMH5HN66 
ProdomH5HN66 
UniProtKBI2VPZ4SubName: Full=Uncharacterized protein;
InterProI2VPZ4 
PFAMI2VPZ4 
ProdomI2VPZ4 
UniProtKBH5N952SubName: Full=Helix-turn-helix family protein;
InterProH5N952 
PFAMH5N952 
ProdomH5N952 
UniProtKBE2WUD1SubName: Full=Helix-turn-helix family protein;
InterProE2WUD1 
PFAME2WUD1 
ProdomE2WUD1 
UniProtKBI5J831SubName: Full=Uncharacterized protein;
InterProI5J831 
PFAMI5J831 
ProdomI5J831 
UniProtKBI5VTS3SubName: Full=Uncharacterized protein;
InterProI5VTS3 
PFAMI5VTS3 
ProdomI5VTS3 
UniProtKBK2YY98SubName: Full=Uncharacterized protein;
InterProK2YY98 
PFAMK2YY98 
ProdomK2YY98 
UniProtKBI5FJ14SubName: Full=Uncharacterized protein;
InterProI5FJ14 
PFAMI5FJ14 
ProdomI5FJ14 
UniProtKBB3H806SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AIF60494.1};
InterProB3H806 
PFAMB3H806 
ProdomB3H806 
UniProtKBE7JTA3SubName: Full=Helix-turn-helix family protein;
InterProE7JTA3 
PFAME7JTA3 
ProdomE7JTA3 
UniProtKBI5QH11SubName: Full=Uncharacterized protein;
InterProI5QH11 
PFAMI5QH11 
ProdomI5QH11 
UniProtKBE7HNW1SubName: Full=Helix-turn-helix family protein;
InterProE7HNW1 
PFAME7HNW1 
ProdomE7HNW1 
UniProtKBH5D234SubName: Full=Helix-turn-helix family protein;
InterProH5D234 
PFAMH5D234 
ProdomH5D234 
UniProtKBI5GTD4SubName: Full=Uncharacterized protein;
InterProI5GTD4 
PFAMI5GTD4 
ProdomI5GTD4 
UniProtKBC4ZVH7SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC4ZVH7 
PFAMC4ZVH7 
ProdomC4ZVH7 
UniProtKBG1Y8P5SubName: Full=Helix-turn-helix family protein;
InterProG1Y8P5 
PFAMG1Y8P5 
ProdomG1Y8P5 
UniProtKBH4YEL2SubName: Full=Antitoxin HicB;
InterProH4YEL2 
PFAMH4YEL2 
ProdomH4YEL2 
UniProtKBI0VMR7SubName: Full=Toxin-antitoxin system, antitoxin component, HicB family {ECO:0000313|EMBL:EID65433.1};
InterProI0VMR7 
PFAMI0VMR7 
ProdomI0VMR7 
UniProtKBH5B926SubName: Full=Helix-turn-helix family protein;
InterProH5B926 
PFAMH5B926 
ProdomH5B926 
UniProtKBB3IER2SubName: Full=Putative uncharacterized protein;
InterProB3IER2 
PFAMB3IER2 
ProdomB3IER2 
UniProtKBB3XAK0SubName: Full=Putative uncharacterized protein;
InterProB3XAK0 
PFAMB3XAK0 
ProdomB3XAK0 
UniProtKBI6EKU5SubName: Full=Antitoxin HicB;
InterProI6EKU5 
PFAMI6EKU5 
ProdomI6EKU5 
UniProtKBA0A069WZT2SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:KDU22416.1};
InterProA0A069WZT2 
PFAMA0A069WZT2 
ProdomA0A069WZT2 
UniProtKBA0A070UXW9SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:KDX47167.1};
InterProA0A070UXW9 
PFAMA0A070UXW9 
ProdomA0A070UXW9 
UniProtKBA0A073FYH9SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:KEJ48755.1};
InterProA0A073FYH9 
PFAMA0A073FYH9 
ProdomA0A073FYH9 
UniProtKBA0A073GDE8SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:KEJ63419.1};
InterProA0A073GDE8 
PFAMA0A073GDE8 
ProdomA0A073GDE8 
UniProtKBA0A073GVQ8SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:KEJ69249.1};
InterProA0A073GVQ8 
PFAMA0A073GVQ8 
ProdomA0A073GVQ8 
UniProtKBA0A074J4Q9SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:KEO12708.1};
InterProA0A074J4Q9 
PFAMA0A074J4Q9 
ProdomA0A074J4Q9 
UniProtKBA0A080EPG5SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:KEN49803.1};
InterProA0A080EPG5 
PFAMA0A080EPG5 
ProdomA0A080EPG5 
UniProtKBA0A080FC09SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:KEN57710.1};
InterProA0A080FC09 
PFAMA0A080FC09 
ProdomA0A080FC09 
UniProtKBA0A090J8B8SubName: Full=Antitoxin HicB;
InterProA0A090J8B8 
PFAMA0A090J8B8 
ProdomA0A090J8B8 
UniProtKBA0A0A0F9B8SubName: Full=Putative HTH-type transcriptional regulator YdcQ {ECO:0000313|EMBL:KGM58958.1};
InterProA0A0A0F9B8 
PFAMA0A0A0F9B8 
ProdomA0A0A0F9B8 
UniProtKBA0A029MV67SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:EZK01530.1};
InterProA0A029MV67 
PFAMA0A029MV67 
ProdomA0A029MV67 
UniProtKBA0A0E3KMD5SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:AKA90478.1};
InterProA0A0E3KMD5 
PFAMA0A0E3KMD5 
ProdomA0A0E3KMD5 
UniProtKBA0A029KWI9SubName: Full=Antitoxin HicB {ECO:0000313|EMBL:EZJ77236.1};
InterProA0A029KWI9 
PFAMA0A029KWI9 
ProdomA0A029KWI9 
UniProtKBC8TRG3SubName: Full=Predicted DNA-binding transcriptional regulator {ECO:0000313|EMBL:BAI25313.1};
InterProC8TRG3 
PFAMC8TRG3 
ProdomC8TRG3 
UniProtKBJ2NRD1SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EJL17022.1};
InterProJ2NRD1 
PFAMJ2NRD1 
ProdomJ2NRD1 
UniProtKBI5E2E2SubName: Full=Uncharacterized protein;
InterProI5E2E2 
PFAMI5E2E2 
ProdomI5E2E2 
UniProtKBC8UPN2SubName: Full=Predicted DNA-binding transcriptional regulator {ECO:0000313|EMBL:BAI35732.1};
InterProC8UPN2 
PFAMC8UPN2 
ProdomC8UPN2 
UniProtKBF7MWD4SubName: Full=Putative HTH-type transcriptional regulator ydcQ;
InterProF7MWD4 
PFAMF7MWD4 
ProdomF7MWD4 
UniProtKBE6AYD3SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EFV00142.1};
InterProE6AYD3 
PFAME6AYD3 
ProdomE6AYD3 
UniProtKBH4VVQ1SubName: Full=Antitoxin HicB;
InterProH4VVQ1 
PFAMH4VVQ1 
ProdomH4VVQ1 
UniProtKBH4U2R3SubName: Full=Antitoxin HicB;
InterProH4U2R3 
PFAMH4U2R3 
ProdomH4U2R3 
UniProtKBE2XGJ8SubName: Full=Helix-turn-helix family protein {ECO:0000313|EMBL:EFP69087.1};
InterProE2XGJ8 
PFAME2XGJ8 
ProdomE2XGJ8 
UniProtKBH5DIJ0SubName: Full=Helix-turn-helix family protein;
InterProH5DIJ0 
PFAMH5DIJ0 
ProdomH5DIJ0