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Sequence Information

Primary Database Link A0A037YJ79
Original Database ID ref NP_416986.4
Organism Escherichia coli, Shigella sonnei, etc.
Annotation subname: full=dna-binding transcriptional
activator, formate sensing {eco:000031
3|embl:cdp70494.1};subname: full=hydrogenase
{eco:0000313|embl:ajb525 ...
Sequence Length 670

Dataset Information:

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Model Information

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Target Region347-661
Protein Length670
Template PDB Code1ojlA
Template Region141-441
Sequence Identity52%
E-Value0
GA3411
MPQS1.02605
z-DOPE-0.23
TSVMod MethodMSALL
TSVMod RMSD3.799
TSVMod NO350.84
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1ojlcrystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding
DBALI1ojlA 
CATH3.40.50.300 Domain: 1ojlA01 P-loop containing nucleotide triphosphate hydrolases (99%)
CATH1.10.8.60 Domain: 1ojlA02 Helicase, Ruva Protein; domain 3 (100%)
CATH1.10.10.60 Domain: 1ojlA03 Homeodomain-like (100%)
JenaImageLibrary1ojl 
Target Sequence
UniProtKBK5GLU2SubName: Full=AAA domain family protein;
InterProK5GLU2 
PFAMK5GLU2 
ProdomK5GLU2 
UniProtKBT8ZVB8SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT8ZVB8 
PFAMT8ZVB8 
ProdomT8ZVB8 
UniProtKBP76977RecName: Full=Hydrogenase-4 transcriptional activator;
InterProP76977 
PFAMP76977 
ProdomP76977 
UniProtKBS0Z556SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS0Z556 
PFAMS0Z556 
ProdomS0Z556 
UniProtKBA0A037YJ79SubName: Full=DNA-binding transcriptional activator, formate sensing {ECO:0000313|EMBL:CDP70494.1};SubName: Full=Hydrogenase {ECO:0000313|EMBL:AJB52588.1};SubName: Full=Sigma-54 interaction domain pro
InterProA0A037YJ79 
PFAMA0A037YJ79 
ProdomA0A037YJ79 
UniProtKBA0A070SQJ1SubName: Full=AAA domain family protein {ECO:0000313|EMBL:KDX20297.1};
InterProA0A070SQJ1 
PFAMA0A070SQJ1 
ProdomA0A070SQJ1 
UniProtKBA0A070YHD9SubName: Full=AAA domain family protein {ECO:0000313|EMBL:KDX90496.1};
InterProA0A070YHD9 
PFAMA0A070YHD9 
ProdomA0A070YHD9 
UniProtKBA0A079FI64SubName: Full=AAA domain family protein {ECO:0000313|EMBL:KDY54464.1};
InterProA0A079FI64 
PFAMA0A079FI64 
ProdomA0A079FI64 
UniProtKBA0A079G1Z3SubName: Full=AAA domain family protein {ECO:0000313|EMBL:KDY68140.1};
InterProA0A079G1Z3 
PFAMA0A079G1Z3 
ProdomA0A079G1Z3 
UniProtKBT7KJW2SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT7KJW2 
PFAMT7KJW2 
ProdomT7KJW2 
UniProtKBP76567RecName: Full=Hydrogenase-4 transcriptional activator;
InterProP76567 
PFAMP76567 
ProdomP76567 
UniProtKBL3QS28SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProL3QS28 
PFAML3QS28 
ProdomL3QS28 
UniProtKBL3VRL6SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProL3VRL6 
PFAML3VRL6 
ProdomL3VRL6 
UniProtKBL3ZPV7SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProL3ZPV7 
PFAML3ZPV7 
ProdomL3ZPV7 
UniProtKBL4WB49SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProL4WB49 
PFAML4WB49 
ProdomL4WB49 
UniProtKBM7VIG3SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProM7VIG3 
PFAMM7VIG3 
ProdomM7VIG3 
UniProtKBN2RE25SubName: Full=AAA domain family protein;
InterProN2RE25 
PFAMN2RE25 
ProdomN2RE25 
UniProtKBT7ZMN5SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT7ZMN5 
PFAMT7ZMN5 
ProdomT7ZMN5 
UniProtKBP71229RecName: Full=Hydrogenase-4 transcriptional activator;
InterProP71229 
PFAMP71229 
ProdomP71229 
UniProtKBA0A080GUV6SubName: Full=AAA domain family protein {ECO:0000313|EMBL:KEN89486.1};
InterProA0A080GUV6 
PFAMA0A080GUV6 
ProdomA0A080GUV6 
UniProtKBA0A0E1M080SubName: Full=Hydrogenase-4 transcriptional activator {ECO:0000313|EMBL:AJF57347.1};
InterProA0A0E1M080 
PFAMA0A0E1M080 
ProdomA0A0E1M080 
UniProtKBA0A0E3KNY8SubName: Full=Hydrogenase-4 transcriptional activator {ECO:0000313|EMBL:AKA91540.1};
InterProA0A0E3KNY8 
PFAMA0A0E3KNY8 
ProdomA0A0E3KNY8 
UniProtKBS1K9V8SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS1K9V8 
PFAMS1K9V8 
ProdomS1K9V8 
UniProtKBB1XAW6SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProB1XAW6 
PFAMB1XAW6 
ProdomB1XAW6 
UniProtKBC4ZX66SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProC4ZX66 
PFAMC4ZX66 
ProdomC4ZX66 
UniProtKBD8AW91SubName: Full=Sigma-54 interaction domain protein {ECO:0000313|EMBL:EFK12590.1};
InterProD8AW91 
PFAMD8AW91 
ProdomD8AW91 
UniProtKBD8B9G6SubName: Full=Sigma-54 interaction domain protein {ECO:0000313|EMBL:EFJ64268.1};
InterProD8B9G6 
PFAMD8B9G6 
ProdomD8B9G6 
UniProtKBD8BWX2SubName: Full=Sigma-54 interaction domain protein {ECO:0000313|EMBL:EFI88841.1};
InterProD8BWX2 
PFAMD8BWX2 
ProdomD8BWX2 
UniProtKBG2F0P4SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProG2F0P4 
PFAMG2F0P4 
ProdomG2F0P4 
UniProtKBT9KB08SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT9KB08 
PFAMT9KB08 
ProdomT9KB08 
UniProtKBG2BCE9SubName: Full=Hydrogenase-4 transcriptional activator;
InterProG2BCE9 
PFAMG2BCE9 
ProdomG2BCE9 
UniProtKBT9JFU3SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT9JFU3 
PFAMT9JFU3 
ProdomT9JFU3 
UniProtKBA0A0G3HQ92SubName: Full=DNA-binding transcriptional activator, formate sensing protein {ECO:0000313|EMBL:AKK15544.1};
InterProA0A0G3HQ92 
PFAMA0A0G3HQ92 
ProdomA0A0G3HQ92 
UniProtKBA0A0H3XAM9SubName: Full=DNA-binding transcriptional activator, formate sensing {ECO:0000313|EMBL:AKM36043.1};
InterProA0A0H3XAM9 
PFAMA0A0H3XAM9 
ProdomA0A0H3XAM9 
UniProtKBT9MC91SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT9MC91 
PFAMT9MC91 
ProdomT9MC91 
UniProtKBT9U2M9SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT9U2M9 
PFAMT9U2M9 
ProdomT9U2M9 
UniProtKBU0CER1SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProU0CER1 
PFAMU0CER1 
ProdomU0CER1 
UniProtKBC9QPT3SubName: Full=DNA-binding transcriptional activator, formate sensing;SubName: Full=Transcriptional regulator, NifA subfamily, Fis Family;
InterProC9QPT3 
PFAMC9QPT3 
ProdomC9QPT3 
UniProtKBF9QVN5SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProF9QVN5 
PFAMF9QVN5 
ProdomF9QVN5 
UniProtKBG2AXQ0SubName: Full=Hydrogenase-4 transcriptional activator;
InterProG2AXQ0 
PFAMG2AXQ0 
ProdomG2AXQ0 
UniProtKBF4SHT3SubName: Full=Hydrogenase-4 transcriptional activator {ECO:0000313|EMBL:EGI12126.1};
InterProF4SHT3 
PFAMF4SHT3 
ProdomF4SHT3 
UniProtKBK3JDI9SubName: Full=Hydrogenase-4 transcriptional activator;
InterProK3JDI9 
PFAMK3JDI9 
ProdomK3JDI9 
UniProtKBH0QB63SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProH0QB63 
PFAMH0QB63 
ProdomH0QB63 
UniProtKBI4J461SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIF84020.1};
InterProI4J461 
PFAMI4J461 
ProdomI4J461 
UniProtKBI2R1A8SubName: Full=Uncharacterized protein;
InterProI2R1A8 
PFAMI2R1A8 
ProdomI2R1A8 
UniProtKBH4V421SubName: Full=Sigma-54 interaction domain protein {ECO:0000313|EMBL:EHV55405.1};
InterProH4V421 
PFAMH4V421 
ProdomH4V421 
UniProtKBS1CAT5SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS1CAT5 
PFAMS1CAT5 
ProdomS1CAT5 
UniProtKBI2I7F6SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProI2I7F6 
PFAMI2I7F6 
ProdomI2I7F6 
UniProtKBS0UQC2SubName: Full=DNA-binding transcriptional activator, formate sensing {ECO:0000313|EMBL:EOU57578.1};
InterProS0UQC2 
PFAMS0UQC2 
ProdomS0UQC2 
UniProtKBT8SI43SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT8SI43 
PFAMT8SI43 
ProdomT8SI43 
UniProtKBM7VDF4SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProM7VDF4 
PFAMM7VDF4 
ProdomM7VDF4 
UniProtKBL3KHL9SubName: Full=DNA-binding transcriptional activator, formate sensing {ECO:0000313|EMBL:ELD98379.1};
InterProL3KHL9 
PFAML3KHL9 
ProdomL3KHL9 
UniProtKBI2PC77SubName: Full=Uncharacterized protein;
InterProI2PC77 
PFAMI2PC77 
ProdomI2PC77 
UniProtKBT9MBS9SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT9MBS9 
PFAMT9MBS9 
ProdomT9MBS9 
UniProtKBS0UD68SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS0UD68 
PFAMS0UD68 
ProdomS0UD68 
UniProtKBN2EZ04SubName: Full=AAA domain family protein;
InterProN2EZ04 
PFAMN2EZ04 
ProdomN2EZ04 
UniProtKBI2ZRS8SubName: Full=Formate hydrogenlyase transcriptional activator;
InterProI2ZRS8 
PFAMI2ZRS8 
ProdomI2ZRS8 
UniProtKBL8C5U6SubName: Full=Formate hydrogenlyase transcriptional activator;
InterProL8C5U6 
PFAML8C5U6 
ProdomL8C5U6 
UniProtKBH4WDZ6SubName: Full=Sigma-54 interaction domain protein;
InterProH4WDZ6 
PFAMH4WDZ6 
ProdomH4WDZ6 
UniProtKBL3M5G6SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProL3M5G6 
PFAML3M5G6 
ProdomL3M5G6 
UniProtKBL3WUS4SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProL3WUS4 
PFAML3WUS4 
ProdomL3WUS4 
UniProtKBM8ZZJ2SubName: Full=AAA domain family protein;
InterProM8ZZJ2 
PFAMM8ZZJ2 
ProdomM8ZZJ2 
UniProtKBH4VZI0SubName: Full=Sigma-54 interaction domain protein;
InterProH4VZI0 
PFAMH4VZI0 
ProdomH4VZI0 
UniProtKBH4VJJ3SubName: Full=Sigma-54 interaction domain protein;
InterProH4VJJ3 
PFAMH4VJJ3 
ProdomH4VJJ3 
UniProtKBT9KCU5SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT9KCU5 
PFAMT9KCU5 
ProdomT9KCU5 
UniProtKBS1K200SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS1K200 
PFAMS1K200 
ProdomS1K200 
UniProtKBS1EAM5SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS1EAM5 
PFAMS1EAM5 
ProdomS1EAM5 
UniProtKBH9UV92SubName: Full=Hydrogenase-4 transcriptional activator {ECO:0000313|EMBL:AFG41435.1};
InterProH9UV92 
PFAMH9UV92 
ProdomH9UV92 
UniProtKBS0ZM81SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS0ZM81 
PFAMS0ZM81 
ProdomS0ZM81 
UniProtKBS0XHI9SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS0XHI9 
PFAMS0XHI9 
ProdomS0XHI9 
UniProtKBT8Z8P4SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProT8Z8P4 
PFAMT8Z8P4 
ProdomT8Z8P4 
UniProtKBP76976RecName: Full=Hydrogenase-4 transcriptional activator;
InterProP76976 
PFAMP76976 
ProdomP76976 
UniProtKBA0A080HZ07SubName: Full=AAA domain family protein {ECO:0000313|EMBL:KEO23064.1};
InterProA0A080HZ07 
PFAMA0A080HZ07 
ProdomA0A080HZ07 
UniProtKBS1P1Y2SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProS1P1Y2 
PFAMS1P1Y2 
ProdomS1P1Y2 
UniProtKBI2Y8S5SubName: Full=Formate hydrogenlyase transcriptional activator;
InterProI2Y8S5 
PFAMI2Y8S5 
ProdomI2Y8S5 
UniProtKBC9QPT3SubName: Full=DNA-binding transcriptional activator, formate sensing;SubName: Full=Transcriptional regulator, NifA subfamily, Fis Family;
InterProC9QPT3 
PFAMC9QPT3 
ProdomC9QPT3 
UniProtKBA0A8F9MKX8SubName: Full=DNA-binding transcriptional regulator HyfR {ECO:0000313|EMBL:QYE26862.1}
InterProA0A8F9MKX8 
PFAMA0A8F9MKX8 
ProdomA0A8F9MKX8 
UniProtKBF4SHT3SubName: Full=Hydrogenase-4 transcriptional activator;
InterProF4SHT3 
PFAMF4SHT3 
ProdomF4SHT3 
UniProtKBI2I7F6SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProI2I7F6 
PFAMI2I7F6 
ProdomI2I7F6 
UniProtKBD8BWX2SubName: Full=GAF domain protein;
InterProD8BWX2 
PFAMD8BWX2 
ProdomD8BWX2 
UniProtKBD8AW91SubName: Full=GAF domain protein;
InterProD8AW91 
PFAMD8AW91 
ProdomD8AW91 
UniProtKBI2PC77SubName: Full=Uncharacterized protein;
InterProI2PC77 
PFAMI2PC77 
ProdomI2PC77 
UniProtKBA0A7Z8FFL5SubName: Full=Hydrogenase-4 transcriptional activator {ECO:0000313|EMBL:TFB44760.1}
InterProA0A7Z8FFL5 
PFAMA0A7Z8FFL5 
ProdomA0A7Z8FFL5 
UniProtKBG2F0P4SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProG2F0P4 
PFAMG2F0P4 
ProdomG2F0P4 
UniProtKBD8B9G6SubName: Full=GAF domain protein;
InterProD8B9G6 
PFAMD8B9G6 
ProdomD8B9G6 
UniProtKBC4ZX66SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProC4ZX66 
PFAMC4ZX66 
ProdomC4ZX66 
UniProtKBH4WDZ6SubName: Full=Sigma-54 interaction domain protein;
InterProH4WDZ6 
PFAMH4WDZ6 
ProdomH4WDZ6 
UniProtKBI2R1A8SubName: Full=Uncharacterized protein;
InterProI2R1A8 
PFAMI2R1A8 
ProdomI2R1A8 
UniProtKBI2ZRS8SubName: Full=Formate hydrogenlyase transcriptional activator;
InterProI2ZRS8 
PFAMI2ZRS8 
ProdomI2ZRS8 
UniProtKBH9UV92SubName: Full=Hydrogenase-4 transcriptional activator;
InterProH9UV92 
PFAMH9UV92 
ProdomH9UV92 
UniProtKBH4VZI0SubName: Full=Sigma-54 interaction domain protein;
InterProH4VZI0 
PFAMH4VZI0 
ProdomH4VZI0 
UniProtKBI4J461SubName: Full=Uncharacterized protein;
InterProI4J461 
PFAMI4J461 
ProdomI4J461 
UniProtKBA0A829FN52SubName: Full=DNA-binding transcriptional activator, formate sensing {ECO:0000313|EMBL:EOU57578.1}
InterProA0A829FN52 
PFAMA0A829FN52 
ProdomA0A829FN52 
UniProtKBA0A8A5HB71SubName: Full=DNA-binding transcriptional regulator HyfR {ECO:0000313|EMBL:QTF27613.1}
InterProA0A8A5HB71 
PFAMA0A8A5HB71 
ProdomA0A8A5HB71 
UniProtKBA0A8A5HLY7SubName: Full=DNA-binding transcriptional regulator HyfR {ECO:0000313|EMBL:QTF32222.1}
InterProA0A8A5HLY7 
PFAMA0A8A5HLY7 
ProdomA0A8A5HLY7 
UniProtKBA0A8F8H0K9SubName: Full=DNA-binding transcriptional regulator HyfR {ECO:0000313|EMBL:QXZ38083.1}
InterProA0A8F8H0K9 
PFAMA0A8F8H0K9 
ProdomA0A8F8H0K9 
UniProtKBG2AXQ0SubName: Full=Hydrogenase-4 transcriptional activator;
InterProG2AXQ0 
PFAMG2AXQ0 
ProdomG2AXQ0 
UniProtKBI2Y8S5SubName: Full=Formate hydrogenlyase transcriptional activator;
InterProI2Y8S5 
PFAMI2Y8S5 
ProdomI2Y8S5 
UniProtKBB1XAW6SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProB1XAW6 
PFAMB1XAW6 
ProdomB1XAW6 
UniProtKBF9QVN5SubName: Full=DNA-binding transcriptional activator, formate sensing;
InterProF9QVN5 
PFAMF9QVN5 
ProdomF9QVN5