University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link B1XE36.1
Original Database ID ref NP_414828.1
Organism Escherichia coli, Shigella sp., etc.
Annotation mata_ecodh recname: full=probable
hth-type transcriptional regulator
mata homolo g
Sequence Length 196

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region24-191
Protein Length196
Template PDB Code1a04A
Template Region7-202
Sequence Identity17%
E-Value0
GA3410.64
MPQS1.01194
z-DOPE-0.58
TSVMod MethodMTALL
TSVMod RMSD40.982
TSVMod NO350.347
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1a04the structure of the nitrate/nitrite response regulator protein narl in the monoclinic c2 crystal form ; PFAM: PF00072 PF00196 ; SCOP: 16234 31089
DBALI1a04A 
CATH3.40.50.2300 Domain: 1a04A01 Rossmann fold (98%)
CATH1.10.10.10 Domain: 1a04A02 "winged helix" repressor DNA binding domain (84%)
JenaImageLibrary1a04 
Target Sequence
UniProtKBE9WPC7SubName: Full=LuxR family protein regulatory protein;
InterProE9WPC7 
PFAME9WPC7 
ProdomE9WPC7 
UniProtKBI2I4U8SubName: Full=Putative regulator;
InterProI2I4U8 
PFAMI2I4U8 
ProdomI2I4U8 
UniProtKBC6V6E4SubName: Full=Predicted regulator;
InterProC6V6E4 
PFAMC6V6E4 
ProdomC6V6E4 
UniProtKBG2F7F0SubName: Full=Putative regulator;
InterProG2F7F0 
PFAMG2F7F0 
ProdomG2F7F0 
UniProtKBE3PEM4SubName: Full=Putative fimbrial transcriptional regulator {ECO:0000313|EMBL:CBI99858.1};
InterProE3PEM4 
PFAME3PEM4 
ProdomE3PEM4 
UniProtKBF9R5Q7SubName: Full=Putative regulator;
InterProF9R5Q7 
PFAMF9R5Q7 
ProdomF9R5Q7 
UniProtKBF4SII0SubName: Full=Putative HTH-type transcriptional regulator YkgK {ECO:0000313|EMBL:EGI09828.1};
InterProF4SII0 
PFAMF4SII0 
ProdomF4SII0 
UniProtKBE6NX83SubName: Full=Predicted regulator;
InterProE6NX83 
PFAME6NX83 
ProdomE6NX83 
UniProtKBE9YD64SubName: Full=LuxR family protein regulatory protein {ECO:0000313|EMBL:EGB67679.1};
InterProE9YD64 
PFAME9YD64 
ProdomE9YD64 
UniProtKBM2PX65SubName: Full=Regulator;
InterProM2PX65 
PFAMM2PX65 
ProdomM2PX65 
UniProtKBC6UAY3SubName: Full=Predicted regulator;
InterProC6UAY3 
PFAMC6UAY3 
ProdomC6UAY3 
UniProtKBQ2MCC8RecName: Full=HTH-type transcriptional regulator MatA;
InterProQ2MCC8 
PFAMQ2MCC8 
ProdomQ2MCC8 
UniProtKBA0A0E3MV85SubName: Full=HTH-type transcriptional regulator EcpR {ECO:0000313|EMBL:AKA89285.1};
InterProA0A0E3MV85 
PFAMA0A0E3MV85 
ProdomA0A0E3MV85 
UniProtKBP71301RecName: Full=HTH-type transcriptional regulator MatA;
InterProP71301 
PFAMP71301 
ProdomP71301 
UniProtKBB1XE36RecName: Full=HTH-type transcriptional regulator MatA;
InterProB1XE36 
PFAMB1XE36 
ProdomB1XE36 
UniProtKBC5W2G0SubName: Full=Predicted regulator;
InterProC5W2G0 
PFAMC5W2G0 
ProdomC5W2G0 
UniProtKBE6NX83SubName: Full=Predicted regulator;
InterProE6NX83 
PFAME6NX83 
ProdomE6NX83 
UniProtKBC6UAY3SubName: Full=Predicted regulator;
InterProC6UAY3 
PFAMC6UAY3 
ProdomC6UAY3 
UniProtKBE3PEM4SubName: Full=Putative fimbrial transcriptional regulator;
InterProE3PEM4 
PFAME3PEM4 
ProdomE3PEM4 
UniProtKBC6V6E4SubName: Full=Predicted regulator;
InterProC6V6E4 
PFAMC6V6E4 
ProdomC6V6E4 
UniProtKBA0A656NWB7SubName: Full=Helix-turn-helix transcriptional regulator {ECO:0000313|EMBL:HAV82534.1}
InterProA0A656NWB7 
PFAMA0A656NWB7 
ProdomA0A656NWB7 
UniProtKBA0A236MRH5SubName: Full=Helix-turn-helix transcriptional regulator {ECO:0000313|EMBL:OLR88583.1}
InterProA0A236MRH5 
PFAMA0A236MRH5 
ProdomA0A236MRH5 
UniProtKBA0A1Q9L991SubName: Full=Helix-turn-helix transcriptional regulator {ECO:0000313|EMBL:OLR88583.1}
InterProA0A1Q9L991 
PFAMA0A1Q9L991 
ProdomA0A1Q9L991 
UniProtKBB1XE36SubName: Full=Predicted regulator;
InterProB1XE36 
PFAMB1XE36 
ProdomB1XE36 
UniProtKBE9WPC7SubName: Full=LuxR family protein regulatory protein;
InterProE9WPC7 
PFAME9WPC7 
ProdomE9WPC7 
UniProtKBE9YD64SubName: Full=LuxR family protein regulatory protein;
InterProE9YD64 
PFAME9YD64 
ProdomE9YD64 
UniProtKBC5W2G0SubName: Full=Predicted regulator;
InterProC5W2G0 
PFAMC5W2G0 
ProdomC5W2G0 
UniProtKBQ2MCC8Predicted regulator
InterProQ2MCC8 
PFAMQ2MCC8 
ProdomQ2MCC8 
UniProtKBI2I4U8SubName: Full=Putative regulator;
InterProI2I4U8 
PFAMI2I4U8 
ProdomI2I4U8 
UniProtKBG2F7F0SubName: Full=Putative regulator;
InterProG2F7F0 
PFAMG2F7F0 
ProdomG2F7F0 
UniProtKBF4SII0SubName: Full=Putative HTH-type transcriptional regulator YkgK;
InterProF4SII0 
PFAMF4SII0 
ProdomF4SII0 
UniProtKBF9R5Q7SubName: Full=Putative regulator;
InterProF9R5Q7 
PFAMF9R5Q7 
ProdomF9R5Q7 
UniProtKBQ2MCC8RecName: Full=HTH-type transcriptional regulator EcpR;
InterProQ2MCC8 
PFAMQ2MCC8 
ProdomQ2MCC8 
UniProtKBB1XE36.1MATA_ECODH RecName: Full=Probable HTH-type transcriptional regulator matA homolog
InterProB1XE36.1 
PFAMB1XE36.1 
ProdomB1XE36.1 
UniProtKBB1XE36RecName: Full=HTH-type transcriptional regulator EcpR;
InterProB1XE36 
PFAMB1XE36 
ProdomB1XE36 
UniProtKBP71301.1MATA_ECOLI RecName: Full=Probable HTH-type transcriptional regulator matA homolog
InterProP71301.1 
PFAMP71301.1 
ProdomP71301.1 
UniProtKBP71301RecName: Full=HTH-type transcriptional regulator EcpR;
InterProP71301 
PFAMP71301 
ProdomP71301 
RefSeqYP_002998118.1 hypothetical protein B21_00256 [Escherichia coli BL21]
RefSeqYP_003052923.1 predicted regulator [Escherichia coli BL21(DE3)]
RefSeqNP_414828.1 predicted regulator [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_003043480.1 putative regulator [Escherichia coli B str. REL606]
RefSeqAP_000948.1 predicted regulator [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_001729238.1 regulator [Escherichia coli str. K-12 substr. DH10B]
GenPept254160372 putative regulator [Escherichia coli B str. REL606]
GenPept85674438predicted regulator
GenPept682117880putative transcriptional regulator for the ecp operon
GenPept549811839putative regulator
GenPept331037608putative HTH-type transcriptional regulator YkgK
GenPept315134980predicted regulator
GenPept309700562putative fimbrial transcriptional regulator
GenPept3025203MATA_ECOLI RecName: Full=Probable HTH-type transcriptional regulator matA homolog
GenPept254287175 predicted regulator [Escherichia coli BL21(DE3)]
GenPept253976482predicted regulator
GenPept253972273predicted regulator
GenPept251783814 hypothetical protein B21_00256 [Escherichia coli BL21]
GenPept242376087predicted regulator
GenPept2367106putative transcriptional regulator for the ecp operon
GenPept226699051MATA_ECODH RecName: Full=Probable HTH-type transcriptional regulator matA homolog
GenPept170079918 regulator [Escherichia coli str. K-12 substr. DH10B]
GenPept169887753predicted regulator
GenPept1657495hypothetical protein
GenPept687671228predicted regulator
GenPept687675514predicted regulator
GenPept730584110putative regulator
GenPept89107168 predicted regulator [Escherichia coli str. K-12 substr. W3110]
GenPept817590217putative transcriptional regulator for the ecp operon
GenPept16128279 predicted regulator [Escherichia coli str. K-12 substr. MG1655]
GenPept817586076putative transcriptional regulator for the ecp operon
GenPept817581935putative transcriptional regulator for the ecp operon
GenPept817577796putative transcriptional regulator for the ecp operon
GenPept817573654putative transcriptional regulator for the ecp operon
GenPept731471839putative regulator
GenPept7467187F64755 ykgK protein - Escherichia coli
GenPept801066788HTH-type transcriptional regulator EcpR
GenPept802133896putative regulator
GenBankACT42152.1 predicted regulator [Escherichia coli BL21(DE3)]
GenBankAAB18023.1 hypothetical protein [Escherichia coli str. K-12 substr. MG1655]
GenBankAAC73397.1 predicted regulator [Escherichia coli str. K-12 substr. MG1655]
GenBankACB01460.1 predicted regulator [Escherichia coli str. K-12 substr. DH10B]
GenBankACT37944.1 predicted regulator [Escherichia coli B str. REL606]
EMBLCAQ30773.1