University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P75718.3
Original Database ID UP P75718
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation rend_ecoli recname: full=putative
defective protein ren from dlp12
prophage
Sequence Length 100

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region3-99
Protein Length100
Template PDB Code2oqgA
Template Region20-108
Sequence Identity20%
E-Value0.00047
GA3410.46
MPQS1.0933
z-DOPE0.32
TSVMod MethodMTALL
TSVMod RMSD11.567
TSVMod NO350.099
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2oqgarsr-like transcriptional regulator from rhodococcus sp. rha1
DBALI2oqgA 
CATH1.10.10.10 Domain: 2oqgA00 "winged helix" repressor DNA binding domain (81%)
JenaImageLibrary2oqg 
Target Sequence
UniProtKBQ2MBN9RecName: Full=Putative defective protein Ren from DLP12 prophage;
InterProQ2MBN9 
PFAMQ2MBN9 
ProdomQ2MBN9 
UniProtKBP75718RecName: Full=Putative defective protein Ren from DLP12 prophage;
InterProP75718 
PFAMP75718 
ProdomP75718 
UniProtKBI2XGA7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EII48027.1};
InterProI2XGA7 
PFAMI2XGA7 
ProdomI2XGA7 
UniProtKBP77082RecName: Full=Putative defective protein Ren from DLP12 prophage;
InterProP77082 
PFAMP77082 
ProdomP77082 
UniProtKBG0FDK7SubName: Full=Ren protein {ECO:0000313|EMBL:AEJ55166.1};
InterProG0FDK7 
PFAMG0FDK7 
ProdomG0FDK7 
UniProtKBG0FDK7SubName: Full=Ren protein;
InterProG0FDK7 
PFAMG0FDK7 
ProdomG0FDK7 
UniProtKBA0A8F9I1E3SubName: Full=Protein ren {ECO:0000313|EMBL:QYE38302.1}
InterProA0A8F9I1E3 
PFAMA0A8F9I1E3 
ProdomA0A8F9I1E3 
UniProtKBA0A2Y0SPX7SubName: Full=Phage exclusion protein {ECO:0000313|EMBL:GDO46695.1}SubName: Full=Protein ren {ECO:0000313|EMBL:EAC1717396.1}SubName: Full=Ren protein from phage origin {ECO:0000313|EMBL:SVF47833.1}
InterProA0A2Y0SPX7 
PFAMA0A2Y0SPX7 
ProdomA0A2Y0SPX7 
UniProtKBI2XGA7SubName: Full=Uncharacterized protein;
InterProI2XGA7 
PFAMI2XGA7 
ProdomI2XGA7 
UniProtKBQ2MBN9RecName: Full=Putative defective protein Ren from DLP12 prophage;
InterProQ2MBN9 
PFAMQ2MBN9 
ProdomQ2MBN9 
UniProtKBP77082RecName: Full=Putative defective protein Ren from DLP12 prophage;
InterProP77082 
PFAMP77082 
ProdomP77082 
UniProtKBP75718.3REND_ECOLI RecName: Full=Putative defective protein ren from DLP12 prophage
InterProP75718.3 
PFAMP75718.3 
ProdomP75718.3 
UniProtKBP75718RecName: Full=Putative defective protein Ren from DLP12 prophage;
InterProP75718 
PFAMP75718 
ProdomP75718 
GenPept115502618REND_ECOLI RecName: Full=Putative defective protein Ren from DLP12 prophage