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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P75838
Original Database ID ref NP_415425.4
Organism Escherichia coli, Shigella boydii, etc.
Annotation recname: full=ribosomal protein
s12 methylthiotransferase accessory
factor ycao;
Sequence Length 586

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region2-583
Protein Length586
Template PDB Code4q86A
Template Region2-583
Sequence Identity100%
E-Value0
GA3411
MPQS2.22507
z-DOPE-1.4
TSVMod MethodMSALL
TSVMod RMSD0.699
TSVMod NO350.95
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Sequence Model Coverage Summary
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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB4q86
DBALI4q86A 
JenaImageLibrary4q86 
Target Sequence
UniProtKBG2CHJ6SubName: Full=Putative uncharacterized protein;
InterProG2CHJ6 
PFAMG2CHJ6 
ProdomG2CHJ6 
UniProtKBC4ZQ31SubName: Full=Conserved protein;
InterProC4ZQ31 
PFAMC4ZQ31 
ProdomC4ZQ31 
UniProtKBB2N5Y0SubName: Full=Putative uncharacterized protein;
InterProB2N5Y0 
PFAMB2N5Y0 
ProdomB2N5Y0 
UniProtKBB1X845SubName: Full=Conserved protein;
InterProB1X845 
PFAMB1X845 
ProdomB1X845 
UniProtKBB1IW26SubName: Full=Putative uncharacterized protein;
InterProB1IW26 
PFAMB1IW26 
ProdomB1IW26 
UniProtKBG1ZWV5SubName: Full=Putative uncharacterized protein;
InterProG1ZWV5 
PFAMG1ZWV5 
ProdomG1ZWV5 
UniProtKBA0A070D313SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDV35543.1};
InterProA0A070D313 
PFAMA0A070D313 
ProdomA0A070D313 
UniProtKBA0A071ALD1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY60165.1};
InterProA0A071ALD1 
PFAMA0A071ALD1 
ProdomA0A071ALD1 
UniProtKBA0A071DAC5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ37978.1};
InterProA0A071DAC5 
PFAMA0A071DAC5 
ProdomA0A071DAC5 
UniProtKBA0A073GIC8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ64395.1};
InterProA0A073GIC8 
PFAMA0A073GIC8 
ProdomA0A073GIC8 
UniProtKBA0A073GXE1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ69854.1};
InterProA0A073GXE1 
PFAMA0A073GXE1 
ProdomA0A073GXE1 
UniProtKBC6EI77SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT29712.1};
InterProC6EI77 
PFAMC6EI77 
ProdomC6EI77 
UniProtKBC5W2C4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ACT29712.1};
InterProC5W2C4 
PFAMC5W2C4 
ProdomC5W2C4 
UniProtKBA7ZYK8SubName: Full=Putative uncharacterized protein;
InterProA7ZYK8 
PFAMA7ZYK8 
ProdomA7ZYK8 
UniProtKBG5UP77SubName: Full=UPF0142 protein ycaO;
InterProG5UP77 
PFAMG5UP77 
ProdomG5UP77 
UniProtKBE9W5Y7SubName: Full=YcaO family protein;
InterProE9W5Y7 
PFAME9W5Y7 
ProdomE9W5Y7 
UniProtKBG5WQ41SubName: Full=UPF0142 protein ycaO;
InterProG5WQ41 
PFAMG5WQ41 
ProdomG5WQ41 
UniProtKBG5W0V8SubName: Full=UPF0142 protein ycaO;
InterProG5W0V8 
PFAMG5W0V8 
ProdomG5W0V8 
UniProtKBG5TV92SubName: Full=UPF0142 protein ycaO;
InterProG5TV92 
PFAMG5TV92 
ProdomG5TV92 
UniProtKBG5XPG8SubName: Full=UPF0142 protein ycaO;
InterProG5XPG8 
PFAMG5XPG8 
ProdomG5XPG8 
UniProtKBH0QC75SubName: Full=Conserved protein;
InterProH0QC75 
PFAMH0QC75 
ProdomH0QC75 
UniProtKBG5X5K3SubName: Full=UPF0142 protein ycaO;
InterProG5X5K3 
PFAMG5X5K3 
ProdomG5X5K3 
UniProtKBG5TF67SubName: Full=UPF0142 protein ycaO;
InterProG5TF67 
PFAMG5TF67 
ProdomG5TF67 
UniProtKBE9UL00SubName: Full=Putative uncharacterized protein;
InterProE9UL00 
PFAME9UL00 
ProdomE9UL00 
UniProtKBA0A074I470SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO03074.1};
InterProA0A074I470 
PFAMA0A074I470 
ProdomA0A074I470 
UniProtKBA0A079DKM4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY23384.1};
InterProA0A079DKM4 
PFAMA0A079DKM4 
ProdomA0A079DKM4 
UniProtKBE7SPU7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFW48455.1};
InterProE7SPU7 
PFAME7SPU7 
ProdomE7SPU7 
UniProtKBE1HGF9SubName: Full=YcaO-like family {ECO:0000313|EMBL:EFK92944.1};
InterProE1HGF9 
PFAME1HGF9 
ProdomE1HGF9 
UniProtKBC8TM20SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAI24347.1};
InterProC8TM20 
PFAMC8TM20 
ProdomC8TM20 
UniProtKBB7LD97SubName: Full=YcaO protein {ECO:0000313|EMBL:CAU96814.1};
InterProB7LD97 
PFAMB7LD97 
ProdomB7LD97 
UniProtKBF3VZX7SubName: Full=Putative uncharacterized protein;
InterProF3VZX7 
PFAMF3VZX7 
ProdomF3VZX7 
UniProtKBE9WR82SubName: Full=YcaO family protein;
InterProE9WR82 
PFAME9WR82 
ProdomE9WR82 
UniProtKBG0F532SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEJ55611.1};
InterProG0F532 
PFAMG0F532 
ProdomG0F532 
UniProtKBF9QW75SubName: Full=Putative uncharacterized protein;
InterProF9QW75 
PFAMF9QW75 
ProdomF9QW75 
UniProtKBG1Z1E4SubName: Full=Putative uncharacterized protein;
InterProG1Z1E4 
PFAMG1Z1E4 
ProdomG1Z1E4 
UniProtKBG2AS63SubName: Full=Putative uncharacterized protein;
InterProG2AS63 
PFAMG2AS63 
ProdomG2AS63 
UniProtKBE2WSW3SubName: Full=Uncharacterized domain protein;
InterProE2WSW3 
PFAME2WSW3 
ProdomE2WSW3 
UniProtKBE7H9G0SubName: Full=Putative uncharacterized protein;
InterProE7H9G0 
PFAME7H9G0 
ProdomE7H9G0 
UniProtKBC8ULC8SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAI34928.1};
InterProC8ULC8 
PFAMC8ULC8 
ProdomC8ULC8 
UniProtKBA0A079FQP2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY62598.1};
InterProA0A079FQP2 
PFAMA0A079FQP2 
ProdomA0A079FQP2 
UniProtKBA0A080ES37SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN50728.1};
InterProA0A080ES37 
PFAMA0A080ES37 
ProdomA0A080ES37 
UniProtKBA0A0A8UA88SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CEK03990.1};
InterProA0A0A8UA88 
PFAMA0A0A8UA88 
ProdomA0A0A8UA88 
UniProtKBA0A0E0TWC5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE55682.1};
InterProA0A0E0TWC5 
PFAMA0A0E0TWC5 
ProdomA0A0E0TWC5 
UniProtKBA0A0E1LX82SubName: Full=Ribosomal protein S12 methylthiotransferase accessory factor {ECO:0000313|EMBL:AJF55673.1};
InterProA0A0E1LX82 
PFAMA0A0E1LX82 
ProdomA0A0E1LX82 
UniProtKBA0A0E1T7S4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EDU65487.1};
InterProA0A0E1T7S4 
PFAMA0A0E1T7S4 
ProdomA0A0E1T7S4 
UniProtKBA0A0G2XPN2SubName: Full=Ribosomal protein S12 methylthiotransferase accessory factor YcaO {ECO:0000313|EMBL:AKI69538.1};
InterProA0A0G2XPN2 
PFAMA0A0G2XPN2 
ProdomA0A0G2XPN2 
UniProtKBA0A0G3HMT7SubName: Full=Ribosomal protein S12 methylthiotransferase accessory factor protein {ECO:0000313|EMBL:AKK13258.1};
InterProA0A0G3HMT7 
PFAMA0A0G3HMT7 
ProdomA0A0G3HMT7 
UniProtKBA0A0I1UH56SubName: Full=Protein ycaO {ECO:0000313|EMBL:CSS00557.1};
InterProA0A0I1UH56 
PFAMA0A0I1UH56 
ProdomA0A0I1UH56 
UniProtKBC9QZU7SubName: Full=Uncharacterized protein;
InterProC9QZU7 
PFAMC9QZU7 
ProdomC9QZU7 
UniProtKBG2B7D3SubName: Full=Putative uncharacterized protein;
InterProG2B7D3 
PFAMG2B7D3 
ProdomG2B7D3 
UniProtKBA0A024KTL0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CDP68272.1};
InterProA0A024KTL0 
PFAMA0A024KTL0 
ProdomA0A024KTL0 
UniProtKBG5UJK0SubName: Full=UPF0142 protein ycaO;
InterProG5UJK0 
PFAMG5UJK0 
ProdomG5UJK0 
UniProtKBA0A027U700SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZD33428.1};
InterProA0A027U700 
PFAMA0A027U700 
ProdomA0A027U700 
UniProtKBA0A029MZ94SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZK03024.1};
InterProA0A029MZ94 
PFAMA0A029MZ94 
ProdomA0A029MZ94 
UniProtKBA0A070U156SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX36297.1};
InterProA0A070U156 
PFAMA0A070U156 
ProdomA0A070U156 
UniProtKBA0A073TYI3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEL27541.1};
InterProA0A073TYI3 
PFAMA0A073TYI3 
ProdomA0A073TYI3 
UniProtKBA0A080GUM6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN91669.1};
InterProA0A080GUM6 
PFAMA0A080GUM6 
ProdomA0A080GUM6 
UniProtKBA0A0E2A373SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIL42024.1};
InterProA0A0E2A373 
PFAMA0A0E2A373 
ProdomA0A0E2A373 
UniProtKBD8EAG6SubName: Full=YcaO-like family {ECO:0000313|EMBL:EFK44913.1};
InterProD8EAG6 
PFAMD8EAG6 
ProdomD8EAG6 
UniProtKBE7TG10SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFW59076.1};
InterProE7TG10 
PFAME7TG10 
ProdomE7TG10 
UniProtKBF9CFV2SubName: Full=Putative uncharacterized protein;
InterProF9CFV2 
PFAMF9CFV2 
ProdomF9CFV2 
UniProtKBG5XUB4SubName: Full=UPF0142 protein ycaO;
InterProG5XUB4 
PFAMG5XUB4 
ProdomG5XUB4 
UniProtKBG2ADA0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGW95863.1};
InterProG2ADA0 
PFAMG2ADA0 
ProdomG2ADA0 
UniProtKBF8YDY2SubName: Full=Putative uncharacterized protein;
InterProF8YDY2 
PFAMF8YDY2 
ProdomF8YDY2 
UniProtKBA0A025CHI4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYV15114.1};
InterProA0A025CHI4 
PFAMA0A025CHI4 
ProdomA0A025CHI4 
UniProtKBF4LXY0SubName: Full=Putative uncharacterized protein;
InterProF4LXY0 
PFAMF4LXY0 
ProdomF4LXY0 
UniProtKBA0A026GWY9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EYY74393.1};
InterProA0A026GWY9 
PFAMA0A026GWY9 
ProdomA0A026GWY9 
UniProtKBA0A080FIJ0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN58597.1};
InterProA0A080FIJ0 
PFAMA0A080FIJ0 
ProdomA0A080FIJ0 
UniProtKBE9XX94SubName: Full=YcaO family protein;
InterProE9XX94 
PFAME9XX94 
ProdomE9XX94 
UniProtKBG5VLA8SubName: Full=UPF0142 protein ycaO;
InterProG5VLA8 
PFAMG5VLA8 
ProdomG5VLA8 
UniProtKBA0A026UID6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZA29371.1};
InterProA0A026UID6 
PFAMA0A026UID6 
ProdomA0A026UID6 
UniProtKBA0A070STJ3SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX20730.1};
InterProA0A070STJ3 
PFAMA0A070STJ3 
ProdomA0A070STJ3 
UniProtKBA0A080G6X0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEN72659.1};
InterProA0A080G6X0 
PFAMA0A080G6X0 
ProdomA0A080G6X0 
UniProtKBD8AQT2SubName: Full=YcaO-like family {ECO:0000313|EMBL:EFK14502.1};
InterProD8AQT2 
PFAMD8AQT2 
ProdomD8AQT2 
UniProtKBF9HTC6SubName: Full=UPF0142 protein ycaO;SubName: Full=YcaO;
InterProF9HTC6 
PFAMF9HTC6 
ProdomF9HTC6 
UniProtKBG2EZ38SubName: Full=Putative uncharacterized protein;
InterProG2EZ38 
PFAMG2EZ38 
ProdomG2EZ38 
UniProtKBG5WHH6SubName: Full=UPF0142 protein ycaO;
InterProG5WHH6 
PFAMG5WHH6 
ProdomG5WHH6 
UniProtKBA0A080IA97SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO26869.1};
InterProA0A080IA97 
PFAMA0A080IA97 
ProdomA0A080IA97 
UniProtKBA0A0E0Y1C9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AFS75238.1};
InterProA0A0E0Y1C9 
PFAMA0A0E0Y1C9 
ProdomA0A0E0Y1C9 
UniProtKBA0A0E3KLX2SubName: Full=Ribosomal protein S12 methylthiotransferase accessory factor YcaO {ECO:0000313|EMBL:AKA89884.1};
InterProA0A0E3KLX2 
PFAMA0A0E3KLX2 
ProdomA0A0E3KLX2 
UniProtKBA0A0H3X3G9SubName: Full=Ribosomal protein S12 methylthiotransferase accessory factor {ECO:0000313|EMBL:AKM34470.1};
InterProA0A0H3X3G9 
PFAMA0A0H3X3G9 
ProdomA0A0H3X3G9 
UniProtKBD7ZT24SubName: Full=YcaO-like family {ECO:0000313|EMBL:EFK25929.1};
InterProD7ZT24 
PFAMD7ZT24 
ProdomD7ZT24 
UniProtKBE7I4Y8SubName: Full=Putative uncharacterized protein;
InterProE7I4Y8 
PFAME7I4Y8 
ProdomE7I4Y8 
UniProtKBE7K3Z7SubName: Full=Putative uncharacterized protein;
InterProE7K3Z7 
PFAME7K3Z7 
ProdomE7K3Z7 
UniProtKBC6UEP0SubName: Full=Putative uncharacterized protein ycaO;
InterProC6UEP0 
PFAMC6UEP0 
ProdomC6UEP0 
UniProtKBF4UKN0SubName: Full=Putative uncharacterized protein;
InterProF4UKN0 
PFAMF4UKN0 
ProdomF4UKN0 
UniProtKBG1Y778SubName: Full=Putative uncharacterized protein;
InterProG1Y778 
PFAMG1Y778 
ProdomG1Y778 
UniProtKBA0A079F5N6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY52083.1};
InterProA0A079F5N6 
PFAMA0A079F5N6 
ProdomA0A079F5N6 
UniProtKBA0A074HWW9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEO00529.1};
InterProA0A074HWW9 
PFAMA0A074HWW9 
ProdomA0A074HWW9 
UniProtKBH4FG69SubName: Full=Uncharacterized protein;
InterProH4FG69 
PFAMH4FG69 
ProdomH4FG69 
UniProtKBG5YED5SubName: Full=UPF0142 protein ycaO;
InterProG5YED5 
PFAMG5YED5 
ProdomG5YED5 
UniProtKBG2C1S3SubName: Full=Putative uncharacterized protein;
InterProG2C1S3 
PFAMG2C1S3 
ProdomG2C1S3 
UniProtKBB3XGN0SubName: Full=Putative uncharacterized protein;
InterProB3XGN0 
PFAMB3XGN0 
ProdomB3XGN0 
UniProtKBA0A028E609SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZE55622.1};
InterProA0A028E609 
PFAMA0A028E609 
ProdomA0A028E609 
UniProtKBA0A029KZU7SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EZJ78391.1};
InterProA0A029KZU7 
PFAMA0A029KZU7 
ProdomA0A029KZU7 
UniProtKBA0A069XPY6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU32233.1};
InterProA0A069XPY6 
PFAMA0A069XPY6 
ProdomA0A069XPY6 
UniProtKBA0A069ZDD1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU55361.1};
InterProA0A069ZDD1 
PFAMA0A069ZDD1 
ProdomA0A069ZDD1 
UniProtKBA0A070YHX1SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX90059.1};
InterProA0A070YHX1 
PFAMA0A070YHX1 
ProdomA0A070YHX1 
UniProtKBA0A073G0A9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KEJ50610.1};
InterProA0A073G0A9 
PFAMA0A073G0A9 
ProdomA0A073G0A9 
UniProtKBE9WCW3SubName: Full=YcaO family protein;
InterProE9WCW3 
PFAME9WCW3 
ProdomE9WCW3