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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P75978.1
Original Database ID UP P75978
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation ymfn_ecoli recname: full=uncharacterized
protein ymfn
Sequence Length 455

Dataset Information:

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Model Information

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Target Region1-112
Protein Length455
Template PDB Code3fm5A
Template Region18-129
Sequence Identity19%
E-Value0
GA3410.45
MPQS0.388754
z-DOPE-0.37
TSVMod MethodMTALL
TSVMod RMSD8.453
TSVMod NO350.12
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3fm5x-ray crystal structure of transcriptional regulator (marr family) from rhodococcus sp. rha1
DBALI3fm5A 
CATH1.10.10.10 Domain: 3fm5A00 "winged helix" repressor DNA binding domain (77%)
JenaImageLibrary3fm5 
Target Sequence
UniProtKBM2N4N4SubName: Full=DNA-binding transcriptional regulator;
InterProM2N4N4 
PFAMM2N4N4 
ProdomM2N4N4 
UniProtKBA0A094Y388SubName: Full=Phage Terminase family protein {ECO:0000313|EMBL:CEE03629.1};SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKO56699.1};
InterProA0A094Y388 
PFAMA0A094Y388 
ProdomA0A094Y388 
UniProtKBP75978RecName: Full=Uncharacterized protein YmfN;
InterProP75978 
PFAMP75978 
ProdomP75978 
UniProtKBC9QYG3SubName: Full=Predicted DNA-binding transcriptional regulator;SubName: Full=Terminase;
InterProC9QYG3 
PFAMC9QYG3 
ProdomC9QYG3 
UniProtKBG2F4E8SubName: Full=Phage terminase;
InterProG2F4E8 
PFAMG2F4E8 
ProdomG2F4E8 
UniProtKBA0A8F8DGK0SubName: Full=Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:QXZ35329.1}
InterProA0A8F8DGK0 
PFAMA0A8F8DGK0 
ProdomA0A8F8DGK0 
UniProtKBA0A4P9SJS8SubName: Full=GntR family transcriptional regulator {ECO:0000313|EMBL:QGF38585.1}SubName: Full=Terminase {ECO:0000313|EMBL:VTQ22729.1}
InterProA0A4P9SJS8 
PFAMA0A4P9SJS8 
ProdomA0A4P9SJS8 
UniProtKBA0A5Q3T7T5SubName: Full=GntR family transcriptional regulator {ECO:0000313|EMBL:QGL40509.1}
InterProA0A5Q3T7T5 
PFAMA0A5Q3T7T5 
ProdomA0A5Q3T7T5 
UniProtKBA0A507W2W6SubName: Full=GntR family transcriptional regulator {ECO:0000313|EMBL:TQC94509.1}SubName: Full=Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:QQQ36595.1}
InterProA0A507W2W6 
PFAMA0A507W2W6 
ProdomA0A507W2W6 
UniProtKBA0A8F9H808SubName: Full=Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:QYE24170.1}
InterProA0A8F9H808 
PFAMA0A8F9H808 
ProdomA0A8F9H808 
UniProtKBC9QYG3SubName: Full=Predicted DNA-binding transcriptional regulator;SubName: Full=Terminase;
InterProC9QYG3 
PFAMC9QYG3 
ProdomC9QYG3 
UniProtKBG2F4E8SubName: Full=Phage terminase;
InterProG2F4E8 
PFAMG2F4E8 
ProdomG2F4E8 
UniProtKBP75978RecName: Full=Uncharacterized protein YmfN;
InterProP75978 
PFAMP75978 
ProdomP75978 
UniProtKBP75978.1YMFN_ECOLI RecName: Full=Uncharacterized protein ymfN
InterProP75978.1 
PFAMP75978.1 
ProdomP75978.1 
UniProtKBA0A385XMZ2Protein YmfN
InterProA0A385XMZ2 
PFAMA0A385XMZ2 
ProdomA0A385XMZ2 
RefSeqAP_001775.1 predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110]
RefSeqNP_415667.1 e14 prophage; predicted DNA-binding transcriptional regulator [Escherichia coli K12]
RefSeqYP_009518764.1e14 prophage; chimeric replication protein/phage terminase YmfN
GenPept899730882hypothetical protein ADZ28_05805
GenPept1787395e14 prophage; predicted DNA-binding transcriptional regulator
GenPept260449712Terminase
GenPept3025235YMFN_ECOLI RecName: Full=Uncharacterized protein ymfN
GenPept315135782predicted DNA-binding transcriptional regulator
GenPept4062724predicted DNA-binding transcriptional regulator
GenPept4062735unnamed protein product
GenPept732684931hypothetical protein EO53_12390
GenPept7467196B64860 ymfN protein - Escherichia coli
GenPept808699899hypothetical protein SH05_09680
GenPept808704274hypothetical protein SH02_09635
GenPept808708646hypothetical protein SH08_09680
GenPept89107995 predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110]
GenPept899722132hypothetical protein ADS71_05800
GenPept899726487hypothetical protein ADZ27_05800
GenPept16129112 (NC_000913) orf, hypothetical protein [Escherichia coli K12]
GenBankACX40134.1 Terminase [Escherichia coli DH1]
GenBankAAC74233.1 e14 prophage; predicted DNA-binding transcriptional regulator [Escherichia coli K12]