University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76073.1
Original Database ID UP P76073
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation ynae_ecoli recname: full=uncharacterized
protein ynae
Sequence Length 88

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region2-88
Protein Length88
Template PDB Code3lcaA
Template Region545-626
Sequence Identity16%
E-Value0
GA3410.14
MPQS0.884736
z-DOPE-0.12
TSVMod MethodMSALL
TSVMod RMSD9.46
TSVMod NO350.245
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3lca
DBALI3lcaA 
JenaImageLibrary3lca 
Target Sequence
UniProtKBH4FR66SubName: Full=Putative DNA-binding transcriptional regulator;
InterProH4FR66 
PFAMH4FR66 
ProdomH4FR66 
UniProtKBB1XCK2SubName: Full=Rac prophage; predicted DNA-binding transcriptional regulator;
InterProB1XCK2 
PFAMB1XCK2 
ProdomB1XCK2 
UniProtKBC4ZVB7SubName: Full=Rac prophage; predicted DNA-binding transcriptional regulator;
InterProC4ZVB7 
PFAMC4ZVB7 
ProdomC4ZVB7 
UniProtKBE6P604SubName: Full=Rac prophage predicted DNA-binding transcriptional regulator;
InterProE6P604 
PFAME6P604 
ProdomE6P604 
UniProtKBC4ZVB7SubName: Full=Rac prophage; predicted DNA-binding transcriptional regulator;
InterProC4ZVB7 
PFAMC4ZVB7 
ProdomC4ZVB7 
UniProtKBE6P604SubName: Full=Rac prophage; predicted DNA-binding transcriptional regulator;
InterProE6P604 
PFAME6P604 
ProdomE6P604 
UniProtKBH4FR66SubName: Full=Putative DNA-binding transcriptional regulator;
InterProH4FR66 
PFAMH4FR66 
ProdomH4FR66 
UniProtKBB1XCK2SubName: Full=Rac prophage; predicted DNA-binding transcriptional regulator;
InterProB1XCK2 
PFAMB1XCK2 
ProdomB1XCK2 
UniProtKBQ2MBD7Predicted DNA-binding transcriptional regulator
InterProQ2MBD7 
PFAMQ2MBD7 
ProdomQ2MBD7 
UniProtKBP76073RecName: Full=Uncharacterized protein ynaE;
InterProP76073 
PFAMP76073 
ProdomP76073 
UniProtKBP76073.1YNAE_ECOLI RecName: Full=Uncharacterized protein ynaE
InterProP76073.1 
PFAMP76073.1 
ProdomP76073.1 
UniProtKBQ2MBD7RecName: Full=Uncharacterized protein ynaE;
InterProQ2MBD7 
PFAMQ2MBD7 
ProdomQ2MBD7 
RefSeqNP_415893.1 Rac prophage; predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001730372.1 Rac prophage; DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B]
RefSeqYP_002926400.1 Rac prophage; putative DNA-binding transcriptional regulator [Escherichia coli BW2952]
RefSeqAP_002001.1 predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110]
GenPept16129336 Rac prophage; predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655]
GenPept169888887Rac prophage; predicted DNA-binding transcriptional regulator
GenPept170081052 Rac prophage; DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B]
GenPept1787639Rac prophage; predicted DNA-binding transcriptional regulator
GenPept238863412Rac prophage; predicted DNA-binding transcriptional regulator
GenPept238900604 Rac prophage; putative DNA-binding transcriptional regulator [Escherichia coli BW2952]
GenPept3025246YNAE_ECOLI RecName: Full=Uncharacterized protein ynaE
GenPept315136016Rac prophage; predicted DNA-binding transcriptional regulator
GenPept557271715Rac prophage; putative DNA-binding transcriptional regulator
GenPept7467201B64888 ynaE protein - Escherichia coli
GenPept85674931predicted DNA-binding transcriptional regulator
GenPept89108221 predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110]
GenBankAAC74457.1 Rac prophage; predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655]
GenBankACB02594.1 Rac prophage; predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B]
GenBankACR65410.1 Rac prophage; predicted DNA-binding transcriptional regulator [Escherichia coli BW2952]