University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76115.1
Original Database ID ref NP_415968.1
Organism Escherichia coli, Shigella sonnei, etc.
Annotation yncd_ecoli recname: full=probable
tonb-dependent receptor yncd;
flags: precursor
Sequence Length 700

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region23-697
Protein Length700
Template PDB Code1xkwA
Template Region59-720
Sequence Identity19%
E-Value0
GA3411
MPQS0.989986
z-DOPE0.84
TSVMod MethodMTALL
TSVMod RMSD4.585
TSVMod NO350.724
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1xkwpyochelin outer membrane receptor fpta from pseudomonas aeruginosa
DBALI1xkwA 
CATH2.170.130.10 Domain: 1xkwA01 Ferric Hydroxamate Uptake Protein; Chain A, domain 1 (100%)
JenaImageLibrary1xkw 
Target Sequence
UniProtKBL3LJE6SubName: Full=TonB-dependent siderophore receptor;
InterProL3LJE6 
PFAML3LJE6 
ProdomL3LJE6 
UniProtKBA0A071BRP4SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDY84677.1};
InterProA0A071BRP4 
PFAMA0A071BRP4 
ProdomA0A071BRP4 
UniProtKBA0A071CDL0SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDZ17159.1};
InterProA0A071CDL0 
PFAMA0A071CDL0 
ProdomA0A071CDL0 
UniProtKBA0A071D343SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDZ35388.1};
InterProA0A071D343 
PFAMA0A071D343 
ProdomA0A071D343 
UniProtKBA0A073TNG3SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KEL21162.1};
InterProA0A073TNG3 
PFAMA0A073TNG3 
ProdomA0A073TNG3 
UniProtKBA0A074IG18SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KEN99499.1};
InterProA0A074IG18 
PFAMA0A074IG18 
ProdomA0A074IG18 
UniProtKBA0A074IHI0SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KEO12722.1};
InterProA0A074IHI0 
PFAMA0A074IHI0 
ProdomA0A074IHI0 
UniProtKBA0A079CYR6SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDY15750.1};
InterProA0A079CYR6 
PFAMA0A079CYR6 
ProdomA0A079CYR6 
UniProtKBA0A079GLG8SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDY89714.1};
InterProA0A079GLG8 
PFAMA0A079GLG8 
ProdomA0A079GLG8 
UniProtKBA0A080GNH2SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KEN91087.1};
InterProA0A080GNH2 
PFAMA0A080GNH2 
ProdomA0A080GNH2 
UniProtKBA0A0E1LYX2SubName: Full=Putative iron outer membrane transporter {ECO:0000313|EMBL:AJF56288.1};
InterProA0A0E1LYX2 
PFAMA0A0E1LYX2 
ProdomA0A0E1LYX2 
UniProtKBA0A070Y1C0SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDX85372.1};
InterProA0A070Y1C0 
PFAMA0A070Y1C0 
ProdomA0A070Y1C0 
UniProtKBA0A070VA05SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDX47153.1};
InterProA0A070VA05 
PFAMA0A070VA05 
ProdomA0A070VA05 
UniProtKBL3RJ26SubName: Full=TonB-dependent siderophore receptor;
InterProL3RJ26 
PFAML3RJ26 
ProdomL3RJ26 
UniProtKBL3VFM4SubName: Full=TonB-dependent siderophore receptor;
InterProL3VFM4 
PFAML3VFM4 
ProdomL3VFM4 
UniProtKBL3X1P2SubName: Full=TonB-dependent siderophore receptor;
InterProL3X1P2 
PFAML3X1P2 
ProdomL3X1P2 
UniProtKBL3ZYJ4SubName: Full=TonB-dependent siderophore receptor;
InterProL3ZYJ4 
PFAML3ZYJ4 
ProdomL3ZYJ4 
UniProtKBL4WPQ5SubName: Full=TonB-dependent siderophore receptor;
InterProL4WPQ5 
PFAML4WPQ5 
ProdomL4WPQ5 
UniProtKBL8C2P6SubName: Full=Probable tonB-dependent receptor yncD;
InterProL8C2P6 
PFAML8C2P6 
ProdomL8C2P6 
UniProtKBM8RIJ7SubName: Full=TonB-dependent siderophore receptor family protein;
InterProM8RIJ7 
PFAMM8RIJ7 
ProdomM8RIJ7 
UniProtKBA0A037Y7Q6SubName: Full=Iron outer membrane transporter {ECO:0000313|EMBL:KLX05909.1};SubName: Full=TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:CEE07862.1};SubName: Full=TonB-dependent recepto
InterProA0A037Y7Q6 
PFAMA0A037Y7Q6 
ProdomA0A037Y7Q6 
UniProtKBA0A069XEA9SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDU28030.1};
InterProA0A069XEA9 
PFAMA0A069XEA9 
ProdomA0A069XEA9 
UniProtKBA0A069YR79SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KDU49098.1};
InterProA0A069YR79 
PFAMA0A069YR79 
ProdomA0A069YR79 
UniProtKBA0A0E3MWJ5SubName: Full=Putative TonB-dependent receptor YncD {ECO:0000313|EMBL:AKA90494.1};
InterProA0A0E3MWJ5 
PFAMA0A0E3MWJ5 
ProdomA0A0E3MWJ5 
UniProtKBA0A0G3I082SubName: Full=Putative iron outer membrane transporter protein {ECO:0000313|EMBL:AKK17578.1};
InterProA0A0G3I082 
PFAMA0A0G3I082 
ProdomA0A0G3I082 
UniProtKBT9TWK9SubName: Full=Iron outer membrane transporter;
InterProT9TWK9 
PFAMT9TWK9 
ProdomT9TWK9 
UniProtKBS1KUV2SubName: Full=TonB-dependent siderophore receptor;
InterProS1KUV2 
PFAMS1KUV2 
ProdomS1KUV2 
UniProtKBE9WEG9SubName: Full=TonB-dependent siderophore receptor;
InterProE9WEG9 
PFAME9WEG9 
ProdomE9WEG9 
UniProtKBN2HB88SubName: Full=TonB-dependent siderophore receptor family protein;
InterProN2HB88 
PFAMN2HB88 
ProdomN2HB88 
UniProtKBN2FL81SubName: Full=TonB-dependent siderophore receptor family protein;
InterProN2FL81 
PFAMN2FL81 
ProdomN2FL81 
UniProtKBB1XDG2SubName: Full=Predicted iron outer membrane transporter;
InterProB1XDG2 
PFAMB1XDG2 
ProdomB1XDG2 
UniProtKBC4ZWM5SubName: Full=Predicted iron outer membrane transporter;
InterProC4ZWM5 
PFAMC4ZWM5 
ProdomC4ZWM5 
UniProtKBC9QW14SubName: Full=TonB-dependent receptor;Flags: Precursor;
InterProC9QW14 
PFAMC9QW14 
ProdomC9QW14 
UniProtKBD8C4R4SubName: Full=TonB-dependent siderophore receptor {ECO:0000313|EMBL:EFI86098.1};
InterProD8C4R4 
PFAMD8C4R4 
ProdomD8C4R4 
UniProtKBE1HLS5SubName: Full=TonB-dependent siderophore receptor {ECO:0000313|EMBL:EFK91125.1};
InterProE1HLS5 
PFAME1HLS5 
ProdomE1HLS5 
UniProtKBT9IBH9SubName: Full=Iron outer membrane transporter;
InterProT9IBH9 
PFAMT9IBH9 
ProdomT9IBH9 
UniProtKBT9E637SubName: Full=Iron outer membrane transporter {ECO:0000313|EMBL:EQY25061.1};
InterProT9E637 
PFAMT9E637 
ProdomT9E637 
UniProtKBP76115RecName: Full=Probable TonB-dependent receptor YncD;Flags: Precursor;
InterProP76115 
PFAMP76115 
ProdomP76115 
UniProtKBQ2MBB2RecName: Full=Probable TonB-dependent receptor YncD;Flags: Precursor;
InterProQ2MBB2 
PFAMQ2MBB2 
ProdomQ2MBB2 
UniProtKBS0UQZ5SubName: Full=TonB-dependent siderophore receptor;
InterProS0UQZ5 
PFAMS0UQZ5 
ProdomS0UQZ5 
UniProtKBS0VJN8SubName: Full=TonB-dependent siderophore receptor {ECO:0000313|EMBL:EOU67813.1};
InterProS0VJN8 
PFAMS0VJN8 
ProdomS0VJN8 
UniProtKBS1AIZ0SubName: Full=TonB-dependent siderophore receptor;
InterProS1AIZ0 
PFAMS1AIZ0 
ProdomS1AIZ0 
UniProtKBS1KGZ2SubName: Full=TonB-dependent siderophore receptor;
InterProS1KGZ2 
PFAMS1KGZ2 
ProdomS1KGZ2 
UniProtKBS1M0W5SubName: Full=TonB-dependent siderophore receptor;
InterProS1M0W5 
PFAMS1M0W5 
ProdomS1M0W5 
UniProtKBS1P9N7SubName: Full=TonB-dependent siderophore receptor;
InterProS1P9N7 
PFAMS1P9N7 
ProdomS1P9N7 
UniProtKBT7Z5D3SubName: Full=Iron outer membrane transporter;
InterProT7Z5D3 
PFAMT7Z5D3 
ProdomT7Z5D3 
UniProtKBT8SG59SubName: Full=Iron outer membrane transporter;
InterProT8SG59 
PFAMT8SG59 
ProdomT8SG59 
UniProtKBE3PLV2SubName: Full=TonB-dependent receptor {ECO:0000313|EMBL:CBJ01026.1};
InterProE3PLV2 
PFAME3PLV2 
ProdomE3PLV2 
UniProtKBT8YWL3SubName: Full=Iron outer membrane transporter;
InterProT8YWL3 
PFAMT8YWL3 
ProdomT8YWL3 
UniProtKBM8Z973SubName: Full=TonB-dependent siderophore receptor family protein;
InterProM8Z973 
PFAMM8Z973 
ProdomM8Z973 
UniProtKBN3KK57SubName: Full=TonB-dependent siderophore receptor family protein;
InterProN3KK57 
PFAMN3KK57 
ProdomN3KK57 
UniProtKBS0Y353SubName: Full=TonB-dependent siderophore receptor;
InterProS0Y353 
PFAMS0Y353 
ProdomS0Y353 
UniProtKBH0QCQ2SubName: Full=Predicted iron outer membrane transporter;
InterProH0QCQ2 
PFAMH0QCQ2 
ProdomH0QCQ2 
UniProtKBH4VVR5SubName: Full=TonB-dependent Receptor Plug domain protein;
InterProH4VVR5 
PFAMH4VVR5 
ProdomH4VVR5 
UniProtKBU0E5E3SubName: Full=Iron outer membrane transporter;
InterProU0E5E3 
PFAMU0E5E3 
ProdomU0E5E3 
UniProtKBF4SIN7SubName: Full=Putative TonB-dependent receptor yncD {ECO:0000313|EMBL:EGI11048.1};
InterProF4SIN7 
PFAMF4SIN7 
ProdomF4SIN7 
UniProtKBT9NYA4SubName: Full=Iron outer membrane transporter;
InterProT9NYA4 
PFAMT9NYA4 
ProdomT9NYA4 
UniProtKBL2ZCX0SubName: Full=TonB-dependent siderophore receptor;
InterProL2ZCX0 
PFAML2ZCX0 
ProdomL2ZCX0 
UniProtKBM7URD9SubName: Full=Putative iron outer membrane receptor;
InterProM7URD9 
PFAMM7URD9 
ProdomM7URD9 
UniProtKBL3VVS1SubName: Full=TonB-dependent siderophore receptor;
InterProL3VVS1 
PFAML3VVS1 
ProdomL3VVS1 
UniProtKBI4JAE3SubName: Full=TonB-dependent siderophore receptor {ECO:0000313|EMBL:EIF86202.1};
InterProI4JAE3 
PFAMI4JAE3 
ProdomI4JAE3 
UniProtKBE9WSP7SubName: Full=TonB-dependent siderophore receptor protein;
InterProE9WSP7 
PFAME9WSP7 
ProdomE9WSP7 
UniProtKBI2P7T4SubName: Full=TonB-dependent siderophore receptor;
InterProI2P7T4 
PFAMI2P7T4 
ProdomI2P7T4 
UniProtKBT8XLC0SubName: Full=Iron outer membrane transporter {ECO:0000313|EMBL:EQX53721.1};
InterProT8XLC0 
PFAMT8XLC0 
ProdomT8XLC0 
UniProtKBM2PPV1SubName: Full=TonB-dependent receptor;
InterProM2PPV1 
PFAMM2PPV1 
ProdomM2PPV1 
UniProtKBN2N9W5SubName: Full=TonB-dependent siderophore receptor family protein;
InterProN2N9W5 
PFAMN2N9W5 
ProdomN2N9W5 
UniProtKBG2B8I5SubName: Full=Putative tonB-dependent receptor yncD;
InterProG2B8I5 
PFAMG2B8I5 
ProdomG2B8I5 
UniProtKBU0D8C8SubName: Full=Iron outer membrane transporter;
InterProU0D8C8 
PFAMU0D8C8 
ProdomU0D8C8 
UniProtKBI4TMB1SubName: Full=Putative iron outer membrane transporter;
InterProI4TMB1 
PFAMI4TMB1 
ProdomI4TMB1 
UniProtKBL3QZX8SubName: Full=TonB-dependent siderophore receptor;
InterProL3QZX8 
PFAML3QZX8 
ProdomL3QZX8 
UniProtKBM9GT50SubName: Full=TonB-dependent siderophore receptor family protein;
InterProM9GT50 
PFAMM9GT50 
ProdomM9GT50 
UniProtKBL4P4E9SubName: Full=TonB-dependent siderophore receptor;
InterProL4P4E9 
PFAML4P4E9 
ProdomL4P4E9 
UniProtKBH4UIU0SubName: Full=TonB-dependent Receptor Plug domain protein {ECO:0000313|EMBL:EHV59490.1};
InterProH4UIU0 
PFAMH4UIU0 
ProdomH4UIU0 
UniProtKBT9NM61SubName: Full=Iron outer membrane transporter;
InterProT9NM61 
PFAMT9NM61 
ProdomT9NM61 
UniProtKBH4W9Q2SubName: Full=TonB-dependent Receptor Plug domain protein;
InterProH4W9Q2 
PFAMH4W9Q2 
ProdomH4W9Q2 
UniProtKBH9USP0SubName: Full=Putative tonB-dependent receptor yncD {ECO:0000313|EMBL:AFG40533.1};
InterProH9USP0 
PFAMH9USP0 
ProdomH9USP0 
UniProtKBI2HZF9SubName: Full=Putative iron outer membrane transporter;
InterProI2HZF9 
PFAMI2HZF9 
ProdomI2HZF9 
UniProtKBI2R3K0SubName: Full=TonB-dependent siderophore receptor;
InterProI2R3K0 
PFAMI2R3K0 
ProdomI2R3K0 
UniProtKBI2X4Z8SubName: Full=TonB-dependent siderophore receptor {ECO:0000313|EMBL:EII44068.1};
InterProI2X4Z8 
PFAMI2X4Z8 
ProdomI2X4Z8 
UniProtKBI2ZVS9SubName: Full=TonB-dependent siderophore receptor;
InterProI2ZVS9 
PFAMI2ZVS9 
ProdomI2ZVS9 
UniProtKBL3KQ46SubName: Full=TonB-dependent siderophore receptor {ECO:0000313|EMBL:ELE01068.1};
InterProL3KQ46 
PFAML3KQ46 
ProdomL3KQ46 
UniProtKBT7JSV9SubName: Full=Iron outer membrane transporter;
InterProT7JSV9 
PFAMT7JSV9 
ProdomT7JSV9 
UniProtKBN2RM96SubName: Full=TonB-dependent siderophore receptor family protein;
InterProN2RM96 
PFAMN2RM96 
ProdomN2RM96 
UniProtKBG2F6T5SubName: Full=Putative iron outer membrane transporter;
InterProG2F6T5 
PFAMG2F6T5 
ProdomG2F6T5 
UniProtKBM9CRS2SubName: Full=TonB-dependent siderophore receptor family protein;
InterProM9CRS2 
PFAMM9CRS2 
ProdomM9CRS2 
UniProtKBM8U7F1SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:EMV62059.1};
InterProM8U7F1 
PFAMM8U7F1 
ProdomM8U7F1 
UniProtKBN2J2G2SubName: Full=TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:ENA33832.1};
InterProN2J2G2 
PFAMN2J2G2 
ProdomN2J2G2 
UniProtKBF9R2S8SubName: Full=Putative iron outer membrane transporter;
InterProF9R2S8 
PFAMF9R2S8 
ProdomF9R2S8 
UniProtKBG0FFC4SubName: Full=Putative tonB-dependent receptor yncD {ECO:0000313|EMBL:AEJ56498.1};
InterProG0FFC4 
PFAMG0FFC4 
ProdomG0FFC4 
UniProtKBN2SUT7SubName: Full=TonB-dependent siderophore receptor family protein;
InterProN2SUT7 
PFAMN2SUT7 
ProdomN2SUT7 
UniProtKBM7WQS1SubName: Full=Putative iron outer membrane receptor;
InterProM7WQS1 
PFAMM7WQS1 
ProdomM7WQS1 
UniProtKBM9B0K6SubName: Full=TonB-dependent siderophore receptor family protein;
InterProM9B0K6 
PFAMM9B0K6 
ProdomM9B0K6 
UniProtKBD8C4R4SubName: Full=TonB-dependent siderophore receptor;
InterProD8C4R4 
PFAMD8C4R4 
ProdomD8C4R4 
UniProtKBI4JAE3SubName: Full=TonB-dependent siderophore receptor;
InterProI4JAE3 
PFAMI4JAE3 
ProdomI4JAE3 
UniProtKBE1HLS5SubName: Full=TonB-dependent siderophore receptor;
InterProE1HLS5 
PFAME1HLS5 
ProdomE1HLS5 
UniProtKBC4ZWM5SubName: Full=Predicted iron outer membrane transporter;
InterProC4ZWM5 
PFAMC4ZWM5 
ProdomC4ZWM5 
UniProtKBI4TMB1SubName: Full=Putative iron outer membrane transporter;
InterProI4TMB1 
PFAMI4TMB1 
ProdomI4TMB1 
UniProtKBI2R3K0SubName: Full=TonB-dependent siderophore receptor;
InterProI2R3K0 
PFAMI2R3K0 
ProdomI2R3K0 
UniProtKBI2X4Z8SubName: Full=TonB-dependent siderophore receptor;
InterProI2X4Z8 
PFAMI2X4Z8 
ProdomI2X4Z8 
UniProtKBC9QW14SubName: Full=TonB-dependent receptor;Flags: Precursor;
InterProC9QW14 
PFAMC9QW14 
ProdomC9QW14