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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76164.2
Original Database ID UP P76164
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation ydfw_ecoli recname: full=uncharacterized
protein ydfw in qin prophage region
Sequence Length 75

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region1-61
Protein Length75
Template PDB Code1a35A
Template Region613-746
Sequence Identity26%
E-Value0
GA3410.13
MPQS0.786333
z-DOPE0.91
TSVMod MethodMSALL
TSVMod RMSD11.449
TSVMod NO350.061
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1a35human topoisomerase i/dna complex ; EC: 5.99.1.2 ; PFAM: PF01028 PF02919 ; SCOP: 42171 43264
DBALI1a35A 
CATH1.10.132.10 Domain: 1a35A04 Topoisomerase I; Chain A, domain 4 (81%)
JenaImageLibrary1a35 
Target Sequence
UniProtKBA0A0G3HLB1SubName: Full=Uncharacterized protein ydfW in Qin prophage region protein {ECO:0000313|EMBL:AKK12738.1};
InterProA0A0G3HLB1 
PFAMA0A0G3HLB1 
ProdomA0A0G3HLB1 
UniProtKBQ2MB83RecName: Full=Uncharacterized protein ydfW in Qin prophage region;
InterProQ2MB83 
PFAMQ2MB83 
ProdomQ2MB83 
UniProtKBC4ZWY4SubName: Full=Qin prophage; predicted protein;
InterProC4ZWY4 
PFAMC4ZWY4 
ProdomC4ZWY4 
UniProtKBP76164RecName: Full=Uncharacterized protein ydfW in Qin prophage region;
InterProP76164 
PFAMP76164 
ProdomP76164 
UniProtKBC9QV18SubName: Full=Putative uncharacterized protein;
InterProC9QV18 
PFAMC9QV18 
ProdomC9QV18 
UniProtKBC9QV18SubName: Full=Putative uncharacterized protein;
InterProC9QV18 
PFAMC9QV18 
ProdomC9QV18 
UniProtKBA0A4U9LH44SubName: Full=Qin prophage protein {ECO:0000313|EMBL:VTQ22243.1}
InterProA0A4U9LH44 
PFAMA0A4U9LH44 
ProdomA0A4U9LH44 
UniProtKBC4ZWY4SubName: Full=Qin prophage; predicted protein;
InterProC4ZWY4 
PFAMC4ZWY4 
ProdomC4ZWY4 
UniProtKBP76164.2YDFW_ECOLI RecName: Full=Uncharacterized protein ydfW in Qin prophage region
InterProP76164.2 
PFAMP76164.2 
ProdomP76164.2 
UniProtKBQ2MB83RecName: Full=Uncharacterized protein ydfW in Qin prophage region;
InterProQ2MB83 
PFAMQ2MB83 
ProdomQ2MB83 
UniProtKBP76164RecName: Full=Uncharacterized protein ydfW in Qin prophage region;
InterProP76164 
PFAMP76164 
ProdomP76164 
RefSeqNP_416085.2 Qin prophage; predicted protein [Escherichia coli K12]
RefSeqYP_002926583.1 Qin prophage; hypothetical protein [Escherichia coli BW2952]
GenPept145693137Qin prophage; predicted protein
GenPept260449310hypothetical protein EcDH1_2076
GenPept145698265 Qin prophage; predicted protein [Escherichia coli K12]
GenPept827621932Uncharacterized protein ydfW in Qin prophage region protein
GenPept827616755Uncharacterized protein ydfW in Qin prophage region protein
GenPept664683906hypothetical protein HQ24_07735
GenPept557271898Qin prophage protein
GenPept150387810YDFW_ECOLI RecName: Full=Uncharacterized protein ydfW in Qin prophage region
GenPept238900787 Qin prophage; hypothetical protein [Escherichia coli BW2952]
GenPept238863380Qin prophage; predicted protein
GenBankACX39732.1 hypothetical protein EcDH1_2076 [Escherichia coli DH1]
GenBankAAC74640.2 Qin prophage; predicted protein [Escherichia coli K12]
GenBankACR65378.1 Qin prophage; predicted protein [Escherichia coli BW2952]