University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76236.1
Original Database ID ref NP_416299.1
Organism Escherichia coli, Shigella flexneri, etc.
Annotation yeai_ecoli recname: full=inner
membrane protein yeai
Sequence Length 491

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region254-487
Protein Length491
Template PDB Code1w25A
Template Region213-450
Sequence Identity28%
E-Value0
GA3411
MPQS0.799578
z-DOPE0.02
TSVMod MethodMSALL
TSVMod RMSD5.76
TSVMod NO350.711
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1w25response regulator pled in complex with c-digmp
DBALI1w25A 
CATH3.40.50.2300 Domain: 1w25A02 Rossmann fold (49%)
CATH3.30.70.270 Domain: 1w25A03 Alpha-Beta Plaits (97%)
JenaImageLibrary1w25 
Target Sequence
UniProtKBA0A071ALE5SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KDY61994.1};
InterProA0A071ALE5 
PFAMA0A071ALE5 
ProdomA0A071ALE5 
UniProtKBA0A0E1LY77SubName: Full=Putative membrane-anchored diguanylate cyclase {ECO:0000313|EMBL:AJF56680.1};
InterProA0A0E1LY77 
PFAMA0A0E1LY77 
ProdomA0A0E1LY77 
UniProtKBA0A0E2TQC5SubName: Full=Membrane protein {ECO:0000313|EMBL:EYV11225.1};
InterProA0A0E2TQC5 
PFAMA0A0E2TQC5 
ProdomA0A0E2TQC5 
UniProtKBA0A0E3H350SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:AKA90801.1};
InterProA0A0E3H350 
PFAMA0A0E3H350 
ProdomA0A0E3H350 
UniProtKBA0A0G3I388SubName: Full=Putative membrane-anchored diguanylate cyclase protein {ECO:0000313|EMBL:AKK17847.1};
InterProA0A0G3I388 
PFAMA0A0G3I388 
ProdomA0A0G3I388 
UniProtKBA0A0H4RUB5SubName: Full=Diguanylate cyclase {ECO:0000313|EMBL:AKP84510.1};
InterProA0A0H4RUB5 
PFAMA0A0H4RUB5 
ProdomA0A0H4RUB5 
UniProtKBI2R289SubName: Full=Inner membrane protein YeaI;
InterProI2R289 
PFAMI2R289 
ProdomI2R289 
UniProtKBI2VGM4SubName: Full=Diguanylate cyclase (GGDEF) domain protein;
InterProI2VGM4 
PFAMI2VGM4 
ProdomI2VGM4 
UniProtKBI2W6V8SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EII20386.1};
InterProI2W6V8 
PFAMI2W6V8 
ProdomI2W6V8 
UniProtKBI2YN66SubName: Full=Diguanylate cyclase (GGDEF) domain protein;
InterProI2YN66 
PFAMI2YN66 
ProdomI2YN66 
UniProtKBI2ZRN3SubName: Full=Diguanylate cyclase (GGDEF) domain protein;
InterProI2ZRN3 
PFAMI2ZRN3 
ProdomI2ZRN3 
UniProtKBA0A0E0TZ37SubName: Full=Diguanylate cyclase {ECO:0000313|EMBL:AEE56840.1};
InterProA0A0E0TZ37 
PFAMA0A0E0TZ37 
ProdomA0A0E0TZ37 
UniProtKBA0A080FWX6SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KEN69146.1};
InterProA0A080FWX6 
PFAMA0A080FWX6 
ProdomA0A080FWX6 
UniProtKBA0A080FED8SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KEN56718.1};
InterProA0A080FED8 
PFAMA0A080FED8 
ProdomA0A080FED8 
UniProtKBA0A071BR84SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KDY84500.1};
InterProA0A071BR84 
PFAMA0A071BR84 
ProdomA0A071BR84 
UniProtKBA0A071C9K7SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KDZ11669.1};
InterProA0A071C9K7 
PFAMA0A071C9K7 
ProdomA0A071C9K7 
UniProtKBA0A073FX88SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KEJ47575.1};
InterProA0A073FX88 
PFAMA0A073FX88 
ProdomA0A073FX88 
UniProtKBA0A073TXV4SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KEL27062.1};
InterProA0A073TXV4 
PFAMA0A073TXV4 
ProdomA0A073TXV4 
UniProtKBA0A073VYA7SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KEL85485.1};
InterProA0A073VYA7 
PFAMA0A073VYA7 
ProdomA0A073VYA7 
UniProtKBA0A074HUC0SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KEN98598.1};
InterProA0A074HUC0 
PFAMA0A074HUC0 
ProdomA0A074HUC0 
UniProtKBA0A074I2G7SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KEO01078.1};
InterProA0A074I2G7 
PFAMA0A074I2G7 
ProdomA0A074I2G7 
UniProtKBA0A079F836SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KDY53162.1};
InterProA0A079F836 
PFAMA0A079F836 
ProdomA0A079F836 
UniProtKBA0A079FSR9SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KDY64795.1};
InterProA0A079FSR9 
PFAMA0A079FSR9 
ProdomA0A079FSR9 
UniProtKBA0A080ESN6SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KEN48807.1};
InterProA0A080ESN6 
PFAMA0A080ESN6 
ProdomA0A080ESN6 
UniProtKBI4JB27SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:EIF86436.1};
InterProI4JB27 
PFAMI4JB27 
ProdomI4JB27 
UniProtKBI4SWH8SubName: Full=Putative diguanylate cyclase {ECO:0000313|EMBL:EIL54819.1};
InterProI4SWH8 
PFAMI4SWH8 
ProdomI4SWH8 
UniProtKBL4FF10SubName: Full=Inner membrane protein YeaI;
InterProL4FF10 
PFAML4FF10 
ProdomL4FF10 
UniProtKBL4HKV5SubName: Full=Inner membrane protein YeaI;
InterProL4HKV5 
PFAML4HKV5 
ProdomL4HKV5 
UniProtKBL4JNQ6SubName: Full=Inner membrane protein YeaI;
InterProL4JNQ6 
PFAML4JNQ6 
ProdomL4JNQ6 
UniProtKBL4MY95SubName: Full=Inner membrane protein YeaI;
InterProL4MY95 
PFAML4MY95 
ProdomL4MY95 
UniProtKBL4PA78SubName: Full=Inner membrane protein YeaI;
InterProL4PA78 
PFAML4PA78 
ProdomL4PA78 
UniProtKBL5DGL7SubName: Full=Inner membrane protein YeaI;
InterProL5DGL7 
PFAML5DGL7 
ProdomL5DGL7 
UniProtKBL5I5K4SubName: Full=Inner membrane protein YeaI;
InterProL5I5K4 
PFAML5I5K4 
ProdomL5I5K4 
UniProtKBM2NU20SubName: Full=Diguanylate cyclase;
InterProM2NU20 
PFAMM2NU20 
ProdomM2NU20 
UniProtKBM4JL40SubName: Full=Diguanylate cyclase;
InterProM4JL40 
PFAMM4JL40 
ProdomM4JL40 
UniProtKBM8JXJ8SubName: Full=Inner membrane protein YeaI;
InterProM8JXJ8 
PFAMM8JXJ8 
ProdomM8JXJ8 
UniProtKBL3ZZJ5SubName: Full=Inner membrane protein YeaI;
InterProL3ZZJ5 
PFAML3ZZJ5 
ProdomL3ZZJ5 
UniProtKBL3VTW3SubName: Full=Inner membrane protein YeaI;
InterProL3VTW3 
PFAML3VTW3 
ProdomL3VTW3 
UniProtKBL3TNW9SubName: Full=Inner membrane protein YeaI;
InterProL3TNW9 
PFAML3TNW9 
ProdomL3TNW9 
UniProtKBI4URT9SubName: Full=Putative diguanylate cyclase;
InterProI4URT9 
PFAMI4URT9 
ProdomI4URT9 
UniProtKBJ2XML6SubName: Full=Diguanylate cyclase domain protein;
InterProJ2XML6 
PFAMJ2XML6 
ProdomJ2XML6 
UniProtKBK5C6J1SubName: Full=Putative diguanylate cyclase {ECO:0000313|EMBL:EKJ84550.1};
InterProK5C6J1 
PFAMK5C6J1 
ProdomK5C6J1 
UniProtKBK5GTI3SubName: Full=Inner membrane protein YeaI;
InterProK5GTI3 
PFAMK5GTI3 
ProdomK5GTI3 
UniProtKBL2W3L8SubName: Full=Inner membrane protein YeaI;
InterProL2W3L8 
PFAML2W3L8 
ProdomL2W3L8 
UniProtKBL2ZAG6SubName: Full=Inner membrane protein YeaI;
InterProL2ZAG6 
PFAML2ZAG6 
ProdomL2ZAG6 
UniProtKBL3ECG1SubName: Full=Inner membrane protein YeaI;
InterProL3ECG1 
PFAML3ECG1 
ProdomL3ECG1 
UniProtKBL3HTV7SubName: Full=Inner membrane protein YeaI;
InterProL3HTV7 
PFAML3HTV7 
ProdomL3HTV7 
UniProtKBL3KNV9SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:ELE00593.1};
InterProL3KNV9 
PFAML3KNV9 
ProdomL3KNV9 
UniProtKBL3QXK7SubName: Full=Inner membrane protein YeaI;
InterProL3QXK7 
PFAML3QXK7 
ProdomL3QXK7 
UniProtKBI0VLZ2SubName: Full=Putative diguanylate cyclase {ECO:0000313|EMBL:EID65158.1};
InterProI0VLZ2 
PFAMI0VLZ2 
ProdomI0VLZ2 
UniProtKBA0A070F2E8SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV56779.1};
InterProA0A070F2E8 
PFAMA0A070F2E8 
ProdomA0A070F2E8 
UniProtKBM7U7U5SubName: Full=Putative diguanylate cyclase;
InterProM7U7U5 
PFAMM7U7U5 
ProdomM7U7U5 
UniProtKBH5RA82SubName: Full=Diguanylate cyclase domain protein;
InterProH5RA82 
PFAMH5RA82 
ProdomH5RA82 
UniProtKBB6IBK6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:BAG77480.1};
InterProB6IBK6 
PFAMB6IBK6 
ProdomB6IBK6 
UniProtKBI2TB59SubName: Full=Diguanylate cyclase (GGDEF) domain protein;
InterProI2TB59 
PFAMI2TB59 
ProdomI2TB59 
UniProtKBI4TDQ9SubName: Full=Putative diguanylate cyclase;
InterProI4TDQ9 
PFAMI4TDQ9 
ProdomI4TDQ9 
UniProtKBF4MBU7SubName: Full=Diguanylate cyclase;
InterProF4MBU7 
PFAMF4MBU7 
ProdomF4MBU7 
UniProtKBL3I745SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:ELD70499.1};
InterProL3I745 
PFAML3I745 
ProdomL3I745 
UniProtKBG2CKQ1SubName: Full=Diguanylate cyclase domain protein;
InterProG2CKQ1 
PFAMG2CKQ1 
ProdomG2CKQ1 
UniProtKBH0Q8J6SubName: Full=Predicted diguanylate cyclase;
InterProH0Q8J6 
PFAMH0Q8J6 
ProdomH0Q8J6 
UniProtKBI0ZSV9SubName: Full=Putative diguanylate cyclase;
InterProI0ZSV9 
PFAMI0ZSV9 
ProdomI0ZSV9 
UniProtKBH4X5W2SubName: Full=Diguanylate cyclase domain protein;
InterProH4X5W2 
PFAMH4X5W2 
ProdomH4X5W2 
UniProtKBL4ZW14SubName: Full=Inner membrane protein YeaI;
InterProL4ZW14 
PFAML4ZW14 
ProdomL4ZW14 
UniProtKBM8LF75SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:EMU69924.1};
InterProM8LF75 
PFAMM8LF75 
ProdomM8LF75 
UniProtKBI2I921SubName: Full=Putative diguanylate cyclase;
InterProI2I921 
PFAMI2I921 
ProdomI2I921 
UniProtKBH4VWQ8SubName: Full=Inner membrane protein YeaI;
InterProH4VWQ8 
PFAMH4VWQ8 
ProdomH4VWQ8 
UniProtKBB1XGP5SubName: Full=Predicted diguanylate cyclase;
InterProB1XGP5 
PFAMB1XGP5 
ProdomB1XGP5 
UniProtKBJ7RH64SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:CCK47014.1};
InterProJ7RH64 
PFAMJ7RH64 
ProdomJ7RH64 
UniProtKBL5CN68SubName: Full=Inner membrane protein YeaI;
InterProL5CN68 
PFAML5CN68 
ProdomL5CN68 
UniProtKBH5PK42SubName: Full=Diguanylate cyclase domain protein;
InterProH5PK42 
PFAMH5PK42 
ProdomH5PK42 
UniProtKBI2PTS3SubName: Full=Inner membrane protein YeaI;
InterProI2PTS3 
PFAMI2PTS3 
ProdomI2PTS3 
UniProtKBC9QTS3SubName: Full=Diguanylate cyclase;SubName: Full=Predicted diguanylate cyclase;
InterProC9QTS3 
PFAMC9QTS3 
ProdomC9QTS3 
UniProtKBG2A151SubName: Full=Diguanylate cyclase domain protein;
InterProG2A151 
PFAMG2A151 
ProdomG2A151 
UniProtKBL4GXS2SubName: Full=Inner membrane protein YeaI;
InterProL4GXS2 
PFAML4GXS2 
ProdomL4GXS2 
UniProtKBH4XLQ3SubName: Full=Diguanylate cyclase domain protein;
InterProH4XLQ3 
PFAMH4XLQ3 
ProdomH4XLQ3 
UniProtKBH4Y1N7SubName: Full=Diguanylate cyclase domain protein;
InterProH4Y1N7 
PFAMH4Y1N7 
ProdomH4Y1N7 
UniProtKBM8LYQ5SubName: Full=Inner membrane protein YeaI;
InterProM8LYQ5 
PFAMM8LYQ5 
ProdomM8LYQ5 
UniProtKBG2BA47SubName: Full=Diguanylate cyclase domain protein;
InterProG2BA47 
PFAMG2BA47 
ProdomG2BA47 
UniProtKBJ7Q7W4SubName: Full=Diguanylate cyclase {ECO:0000313|EMBL:AJE56217.1};SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KGM69710.1};SubName: Full=Strain O157 SvETEC scaffold4.1, whole genome shotg
InterProJ7Q7W4 
PFAMJ7Q7W4 
ProdomJ7Q7W4 
UniProtKBL3WWQ7SubName: Full=Inner membrane protein YeaI;
InterProL3WWQ7 
PFAML3WWQ7 
ProdomL3WWQ7 
UniProtKBG2EXN6SubName: Full=Putative diguanylate cyclase;
InterProG2EXN6 
PFAMG2EXN6 
ProdomG2EXN6 
UniProtKBL3RJI2SubName: Full=Inner membrane protein YeaI;
InterProL3RJI2 
PFAML3RJI2 
ProdomL3RJI2 
UniProtKBH4FFW2SubName: Full=Putative diguanylate cyclase;
InterProH4FFW2 
PFAMH4FFW2 
ProdomH4FFW2 
UniProtKBH4V1F0SubName: Full=Diguanylate cyclase domain protein {ECO:0000313|EMBL:EHV58076.1};
InterProH4V1F0 
PFAMH4V1F0 
ProdomH4V1F0 
UniProtKBA0A069X6R9SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KDU25575.1};
InterProA0A069X6R9 
PFAMA0A069X6R9 
ProdomA0A069X6R9 
UniProtKBA0A069XTH7SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KDU30887.1};
InterProA0A069XTH7 
PFAMA0A069XTH7 
ProdomA0A069XTH7 
UniProtKBA0A069Z7K8SubName: Full=Inner membrane protein YeaI {ECO:0000313|EMBL:KDU54879.1};
InterProA0A069Z7K8 
PFAMA0A069Z7K8 
ProdomA0A069Z7K8 
UniProtKBF9QV51SubName: Full=Putative diguanylate cyclase;
InterProF9QV51 
PFAMF9QV51 
ProdomF9QV51 
UniProtKBK3UF01SubName: Full=Inner membrane protein YeaI;
InterProK3UF01 
PFAMK3UF01 
ProdomK3UF01 
UniProtKBA0A070CK22SubName: Full=Membrane protein {ECO:0000313|EMBL:KDV28690.1};
InterProA0A070CK22 
PFAMA0A070CK22 
ProdomA0A070CK22 
UniProtKBH5QEX1SubName: Full=Diguanylate cyclase domain protein;
InterProH5QEX1 
PFAMH5QEX1 
ProdomH5QEX1 
UniProtKBM8MCX5SubName: Full=Inner membrane protein YeaI;
InterProM8MCX5 
PFAMM8MCX5 
ProdomM8MCX5 
UniProtKBL4WK91SubName: Full=Inner membrane protein YeaI;
InterProL4WK91 
PFAML4WK91 
ProdomL4WK91 
UniProtKBH9URL6SubName: Full=Putative diguanylate cyclase {ECO:0000313|EMBL:AFG40159.1};
InterProH9URL6 
PFAMH9URL6 
ProdomH9URL6 
UniProtKBI2P6Y5SubName: Full=Inner membrane protein YeaI;
InterProI2P6Y5 
PFAMI2P6Y5 
ProdomI2P6Y5 
UniProtKBB7M1J9SubName: Full=Putative diguanylate cyclase;
InterProB7M1J9 
PFAMB7M1J9 
ProdomB7M1J9 
UniProtKBC4ZZE1SubName: Full=Predicted diguanylate cyclase;
InterProC4ZZE1 
PFAMC4ZZE1 
ProdomC4ZZE1 
UniProtKBI2STD3SubName: Full=Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EIH24054.1};
InterProI2STD3 
PFAMI2STD3 
ProdomI2STD3 
UniProtKBD6HXR6SubName: Full=Inner membrane protein yeaI {ECO:0000313|EMBL:EFE62415.2};
InterProD6HXR6 
PFAMD6HXR6 
ProdomD6HXR6 
UniProtKBI2S9C4SubName: Full=Diguanylate cyclase (GGDEF) domain protein;
InterProI2S9C4 
PFAMI2S9C4 
ProdomI2S9C4