University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A094VWD6
Original Database ID ref NP_416749.4
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation subname: full=inner membrane transport
protein rhmt;subname: full=mfs
transporte r {eco:0000313|embl:ako57759.1};
Sequence Length 429

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region1-417
Protein Length429
Template PDB Code1pw4A
Template Region14-436
Sequence Identity21%
E-Value7.7e-8
GA3410.64
MPQS1.08313
z-DOPE0.65
TSVMod MethodMTALL
TSVMod RMSD25.187
TSVMod NO350.001
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1pw4crystal structure of the glycerol-3-phosphate transporter from e.coli
DBALI1pw4A 
CATH1.20.1250.20 Domain: 1pw4A01 MFS general substrate transporter like domains (100%)
CATH1.20.1250.20 Domain: 1pw4A02 MFS general substrate transporter like domains (93%)
JenaImageLibrary1pw4 
Target Sequence
UniProtKBC9QR63SubName: Full=Major facilitator superfamily MFS_1;SubName: Full=Putative transporter;
InterProC9QR63 
PFAMC9QR63 
ProdomC9QR63 
UniProtKBG2EZQ1SubName: Full=Putative transporter;
InterProG2EZQ1 
PFAMG2EZQ1 
ProdomG2EZQ1 
UniProtKBI0ZUH4SubName: Full=Putative transporter;
InterProI0ZUH4 
PFAMI0ZUH4 
ProdomI0ZUH4 
UniProtKBH0QAQ4SubName: Full=Predicted transporter;
InterProH0QAQ4 
PFAMH0QAQ4 
ProdomH0QAQ4 
UniProtKBC4ZU88SubName: Full=Predicted transporter;
InterProC4ZU88 
PFAMC4ZU88 
ProdomC4ZU88 
UniProtKBB1X8V9SubName: Full=Predicted transporter;
InterProB1X8V9 
PFAMB1X8V9 
ProdomB1X8V9 
UniProtKBM2PGW3SubName: Full=Putative transporter;
InterProM2PGW3 
PFAMM2PGW3 
ProdomM2PGW3 
UniProtKBA0A0G3HY10SubName: Full=Putative L-rhamnonate transporter protein {ECO:0000313|EMBL:AKK18206.1};
InterProA0A0G3HY10 
PFAMA0A0G3HY10 
ProdomA0A0G3HY10 
UniProtKBP76470RecName: Full=Inner membrane transport protein RhmT;
InterProP76470 
PFAMP76470 
ProdomP76470 
UniProtKBP76930RecName: Full=Inner membrane transport protein RhmT;
InterProP76930 
PFAMP76930 
ProdomP76930 
UniProtKBA0A094VWD6SubName: Full=Inner membrane transport protein RhmT;SubName: Full=MFS transporter {ECO:0000313|EMBL:AKO57759.1};
InterProA0A094VWD6 
PFAMA0A094VWD6 
ProdomA0A094VWD6 
UniProtKBF9R4W2SubName: Full=Putative transporter;
InterProF9R4W2 
PFAMF9R4W2 
ProdomF9R4W2 
UniProtKBB1X8V9SubName: Full=Predicted transporter;
InterProB1X8V9 
PFAMB1X8V9 
ProdomB1X8V9 
UniProtKBC4ZU88SubName: Full=Predicted transporter;
InterProC4ZU88 
PFAMC4ZU88 
ProdomC4ZU88 
UniProtKBA0A8G1CS16SubName: Full=MFS transporter {ECO:0000313|EMBL:QZA48087.1}
InterProA0A8G1CS16 
PFAMA0A8G1CS16 
ProdomA0A8G1CS16 
UniProtKBA0A8F8DIY3SubName: Full=MFS transporter {ECO:0000313|EMBL:QXZ38309.1}
InterProA0A8F8DIY3 
PFAMA0A8F8DIY3 
ProdomA0A8F8DIY3 
UniProtKBA0A5Q3TAR5SubName: Full=MFS transporter {ECO:0000313|EMBL:QGL41559.1}
InterProA0A5Q3TAR5 
PFAMA0A5Q3TAR5 
ProdomA0A5Q3TAR5 
UniProtKBF9R4W2SubName: Full=Putative transporter;
InterProF9R4W2 
PFAMF9R4W2 
ProdomF9R4W2 
UniProtKBG2EZQ1SubName: Full=Putative transporter;
InterProG2EZQ1 
PFAMG2EZQ1 
ProdomG2EZQ1 
UniProtKBH0QAQ4SubName: Full=Predicted transporter;
InterProH0QAQ4 
PFAMH0QAQ4 
ProdomH0QAQ4 
UniProtKBI0ZUH4SubName: Full=Putative transporter;
InterProI0ZUH4 
PFAMI0ZUH4 
ProdomI0ZUH4 
UniProtKBA0A2S5ZG55SubName: Full=MFS transporter {ECO:0000313|EMBL:EAC1714269.1}SubName: Full=Transport protein YfaV {ECO:0000313|EMBL:SVF25451.1}
InterProA0A2S5ZG55 
PFAMA0A2S5ZG55 
ProdomA0A2S5ZG55 
UniProtKBC9QR63SubName: Full=Major facilitator superfamily MFS_1;SubName: Full=Putative transporter;
InterProC9QR63 
PFAMC9QR63 
ProdomC9QR63 
UniProtKBA0A8F9MME4SubName: Full=MFS transporter {ECO:0000313|EMBL:QYE27088.1}
InterProA0A8F9MME4 
PFAMA0A8F9MME4 
ProdomA0A8F9MME4 
UniProtKBP76470RecName: Full=Inner membrane transport protein RhmT;
InterProP76470 
PFAMP76470 
ProdomP76470 
UniProtKBP76470.2RHMT_ECOLI RecName: Full=Inner membrane transport protein RhmT
InterProP76470.2 
PFAMP76470.2 
ProdomP76470.2 
UniProtKBP76930RecName: Full=Inner membrane transport protein RhmT;
InterProP76930 
PFAMP76930 
ProdomP76930 
RefSeqAP_002843.1 predicted transporter [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_002927216.1 putative transporter [Escherichia coli BW2952]
RefSeqNP_416749.4 predicted L-rhamnonate transporter [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001731184.1 transporter [Escherichia coli str. K-12 substr. DH10B]
GenPept817583783putative L-rhamnonate transporter
GenPept549813678putative L-rhamnonate transporter
GenPept932860196Inner membrane transport protein YfaV
GenPept90111406 predicted L-rhamnonate transporter [Escherichia coli str. K-12 substr. MG1655]
GenPept899731995MFS transporter
GenPept899727560MFS transporter
GenPept899723205MFS transporter
GenPept808700965MFS transporter
GenPept732683875MFS transporter
GenPept731471180putative L-rhamnonate transporter
GenPept730583451putative L-rhamnonate transporter
GenPept687677387predicted transporter
GenPept687673094predicted transporter
GenPept682119729putative L-rhamnonate transporter
GenPept664684550MFS transporter
GenPept557272530putative transporter
GenPept4033491RHMT_ECOLI RecName: Full=Inner membrane transport protein RhmT
GenPept359332589predicted transporter
GenPept315136879putative transporter
GenPept260448662major facilitator superfamily MFS_1
GenPept238901420 putative transporter [Escherichia coli BW2952]
GenPept238863170predicted transporter
GenPept1799599predicted transporter
GenPept170081864 transporter [Escherichia coli str. K-12 substr. DH10B]
GenPept808705339MFS transporter
GenPept808709700MFS transporter
GenPept89109063 predicted transporter [Escherichia coli str. K-12 substr. W3110]
GenPept87082071putative L-rhamnonate transporter
GenPept827622472putative L-rhamnonate transporter protein
GenPept827619756putative L-rhamnonate transporter protein
GenPept817592064putative L-rhamnonate transporter
GenPept817587924putative L-rhamnonate transporter
GenPept817579644putative L-rhamnonate transporter
GenPept817575502putative L-rhamnonate transporter
GenPept808735578MFS transporter
GenPept808731159MFS transporter
GenPept808722842MFS transporter
GenPept808718470MFS transporter
GenPept808714061MFS transporter
GenPept169889699predicted transporter
GenBankAAC75306.2 predicted L-rhamnonate transporter [Escherichia coli str. K-12 substr. MG1655]
GenBankACB03406.1 predicted transporter [Escherichia coli str. K-12 substr. DH10B]
GenBankACR65168.1 predicted transporter [Escherichia coli BW2952]
GenBankACX39084.1 major facilitator superfamily MFS_1 [Escherichia coli DH1]