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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76507.1
Original Database ID ref NP_416853.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation yfdi_ecoli recname: full=uncharacterized
protein yfdi
Sequence Length 443

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region221-319
Protein Length443
Template PDB Code2fgtA
Template Region171-270
Sequence Identity32%
E-Value0.6
GA3410.07
MPQS0.177276
z-DOPE2.33
TSVMod MethodMSALL
TSVMod RMSD16.857
TSVMod NO350.05
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2fgtcrystal structure of yych from bacillus subtilis
DBALI2fgtA 
JenaImageLibrary2fgt 
Target Sequence
UniProtKBB1X9M4SubName: Full=CPS-53 (KpLE1) prophage; predicted inner membrane protein;
InterProB1X9M4 
PFAMB1X9M4 
ProdomB1X9M4 
UniProtKBA0A094VRG6SubName: Full=Putative membrane protein;SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKO57863.1};
InterProA0A094VRG6 
PFAMA0A094VRG6 
ProdomA0A094VRG6 
UniProtKBA0A073TK92SubName: Full=Putative membrane protein {ECO:0000313|EMBL:KEL29068.1};
InterProA0A073TK92 
PFAMA0A073TK92 
ProdomA0A073TK92 
UniProtKBC4ZVP2SubName: Full=CPS-53 (KpLE1) prophage; predicted inner membrane protein;
InterProC4ZVP2 
PFAMC4ZVP2 
ProdomC4ZVP2 
UniProtKBC9QQI5SubName: Full=CPS-53 (KpLE1) prophage predicted inner membrane protein;
InterProC9QQI5 
PFAMC9QQI5 
ProdomC9QQI5 
UniProtKBF9QZX1SubName: Full=CPS-53 (KpLE1) prophage; putative inner membrane protein;
InterProF9QZX1 
PFAMF9QZX1 
ProdomF9QZX1 
UniProtKBG2EZE4SubName: Full=CPS-53 (KpLE1) prophage; putative inner membrane protein;
InterProG2EZE4 
PFAMG2EZE4 
ProdomG2EZE4 
UniProtKBA0A069Z2H1SubName: Full=Putative membrane protein {ECO:0000313|EMBL:KDU53792.1};
InterProA0A069Z2H1 
PFAMA0A069Z2H1 
ProdomA0A069Z2H1 
UniProtKBM2PGD1SubName: Full=CPS-53 (KpLE1) prophage inner membrane protein;
InterProM2PGD1 
PFAMM2PGD1 
ProdomM2PGD1 
UniProtKBA0A0G3I4K1SubName: Full=Serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage protein {ECO:0000313|EMBL:AKK18297.1};
InterProA0A0G3I4K1 
PFAMA0A0G3I4K1 
ProdomA0A0G3I4K1 
UniProtKBP76507RecName: Full=Uncharacterized protein YfdI;
InterProP76507 
PFAMP76507 
ProdomP76507 
UniProtKBA0A069XRK5SubName: Full=Putative membrane protein {ECO:0000313|EMBL:KDU32891.1};
InterProA0A069XRK5 
PFAMA0A069XRK5 
ProdomA0A069XRK5 
UniProtKBQ2MAL2RecName: Full=Uncharacterized protein YfdI;
InterProQ2MAL2 
PFAMQ2MAL2 
ProdomQ2MAL2 
UniProtKBA0A7U1PH94SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QQZ94730.1}
InterProA0A7U1PH94 
PFAMA0A7U1PH94 
ProdomA0A7U1PH94 
UniProtKBA0A8F8DI71SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QXZ38207.1}
InterProA0A8F8DI71 
PFAMA0A8F8DI71 
ProdomA0A8F8DI71 
UniProtKBA0A8F9MST9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QYE26986.1}
InterProA0A8F9MST9 
PFAMA0A8F9MST9 
ProdomA0A8F9MST9 
UniProtKBB1X9M4SubName: Full=CPS-53 (KpLE1) prophage; predicted inner membrane protein;
InterProB1X9M4 
PFAMB1X9M4 
ProdomB1X9M4 
UniProtKBC4ZVP2SubName: Full=CPS-53 (KpLE1) prophage; predicted inner membrane protein;
InterProC4ZVP2 
PFAMC4ZVP2 
ProdomC4ZVP2 
UniProtKBA0A6G6ZKU9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:QIH03326.1}
InterProA0A6G6ZKU9 
PFAMA0A6G6ZKU9 
ProdomA0A6G6ZKU9 
UniProtKBC9QQI5SubName: Full=CPS-53 (KpLE1) prophage; predicted inner membrane protein;
InterProC9QQI5 
PFAMC9QQI5 
ProdomC9QQI5 
UniProtKBQ2MAL2Predicted inner membrane protein
InterProQ2MAL2 
PFAMQ2MAL2 
ProdomQ2MAL2 
UniProtKBF9QZX1SubName: Full=CPS-53 (KpLE1) prophage; putative inner membrane protein;
InterProF9QZX1 
PFAMF9QZX1 
ProdomF9QZX1 
UniProtKBG2EZE4SubName: Full=CPS-53 (KpLE1) prophage; putative inner membrane protein;
InterProG2EZE4 
PFAMG2EZE4 
ProdomG2EZE4 
UniProtKBP76507.1YFDI_ECOLI RecName: Full=Uncharacterized protein yfdI
InterProP76507.1 
PFAMP76507.1 
ProdomP76507.1 
UniProtKBP76507RecName: Full=Uncharacterized protein YfdI;
InterProP76507 
PFAMP76507 
ProdomP76507 
UniProtKBQ2MAL2RecName: Full=Uncharacterized protein YfdI;
InterProQ2MAL2 
PFAMQ2MAL2 
ProdomQ2MAL2 
RefSeqAP_002951.1 predicted inner membrane protein [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_002927320.1 CPS-53 (KpLE1) prophage; putative inner membrane protein [Escherichia coli BW2952]
RefSeqNP_416853.1 serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001731287.1 CPS-53 (KpLE1) prophage; inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
GenPept808735682hypothetical protein SF31_16190
GenPept89109171 predicted inner membrane protein [Escherichia coli str. K-12 substr. W3110]
GenPept899723308hypothetical protein ADS71_12135
GenPept899727663hypothetical protein ADZ27_12135
GenPept899732100hypothetical protein ADZ28_12135
GenPept932860415putative ligase
GenPept33757484Sequence 462 from patent US 6589738
GenPept85675368predicted inner membrane protein
GenPept827622563serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage protein
GenPept557272634CPS-53 (KpLE1) prophage; putative inner membrane protein
GenPept63089159unnamed protein product
GenPept664684655hypothetical protein HQ24_11700
GenPept682119833serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept687673201CPS-53 (KpLE1) prophage; predicted inner membrane protein
GenPept687677495CPS-53 (KpLE1) prophage; predicted inner membrane protein
GenPept730583561serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept731471290serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept549813780serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept47265938Sequence 276 from patent US 6720139
GenPept16130284 serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage [Escherichia coli str. K-12 substr. MG1655]
GenPept169889802CPS-53 (KpLE1) prophage; predicted inner membrane protein
GenPept170081967 CPS-53 (KpLE1) prophage; inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
GenPept1788693serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept238860657CPS-53 (KpLE1) prophage; predicted inner membrane protein
GenPept238901524 CPS-53 (KpLE1) prophage; putative inner membrane protein [Escherichia coli BW2952]
GenPept260448557hypothetical protein EcDH1_1306
GenPept315136986CPS-53 (KpLE1) prophage; predicted inner membrane protein
GenPept732683771hypothetical protein EO53_06090
GenPept7466332E65008 hypothetical protein b2352 - Escherichia coli (strain K-12)
GenPept808722945hypothetical protein SH04_15875
GenPept808731262hypothetical protein SH07_15880
GenPept817575606serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept817579748serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept817583887serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept817588028serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept817592168serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept827619665serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage protein
GenPept808718573hypothetical protein SH06_16190
GenPept808714164hypothetical protein SH03_15885
GenPept14195553YFDI_ECOLI RecName: Full=Uncharacterized protein yfdI
GenPept802135769serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage
GenPept808701068hypothetical protein SH05_15990
GenPept808705442hypothetical protein SH02_15945
GenPept808709803hypothetical protein SH08_15985
GenBankACB03509.1 CPS-53 (KpLE1) prophage; predicted inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
GenBankACR62655.1 CPS-53 (KpLE1) prophage; predicted inner membrane protein [Escherichia coli BW2952]
GenBankACX38979.1 hypothetical protein EcDH1_1306 [Escherichia coli DH1]
GenBankAAC75411.1 serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage [Escherichia coli str. K-12 substr. MG1655]