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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76521.1
Original Database ID ref NP_416878.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation yfdy_ecoli recname: full=uncharacterized
protein yfdy
Sequence Length 80

Dataset Information:

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Model Information

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Target Region8-51
Protein Length80
Template PDB Code3kcuC
Template Region79-136
Sequence Identity39%
E-Value0.25
GA3410.07
MPQS0.4438
z-DOPE3.37
TSVMod MethodMSRED
TSVMod RMSD6.186
TSVMod NO350.224
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Sequence Model Coverage Summary
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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3kcustructure of formate channel
DBALI3kcuC 
JenaImageLibrary3kcu 
Target Sequence
UniProtKBL2UXI6SubName: Full=Inner membrane protein {ECO:0000313|EMBL:ELC07753.1};
InterProL2UXI6 
PFAML2UXI6 
ProdomL2UXI6 
UniProtKBA0A0G3HWY6SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:AKK15632.1};
InterProA0A0G3HWY6 
PFAMA0A0G3HWY6 
ProdomA0A0G3HWY6 
UniProtKBA0A0H3X7W1SubName: Full=Inner membrane protein {ECO:0000313|EMBL:AKM35940.1};
InterProA0A0H3X7W1 
PFAMA0A0H3X7W1 
ProdomA0A0H3X7W1 
UniProtKBM7VQR2SubName: Full=Uncharacterized protein;
InterProM7VQR2 
PFAMM7VQR2 
ProdomM7VQR2 
UniProtKBM8R8H6SubName: Full=Uncharacterized protein;
InterProM8R8H6 
PFAMM8R8H6 
ProdomM8R8H6 
UniProtKBM8Z751SubName: Full=Uncharacterized protein;
InterProM8Z751 
PFAMM8Z751 
ProdomM8Z751 
UniProtKBM9BWP7SubName: Full=Uncharacterized protein;
InterProM9BWP7 
PFAMM9BWP7 
ProdomM9BWP7 
UniProtKBN2FMS2SubName: Full=Uncharacterized protein;
InterProN2FMS2 
PFAMN2FMS2 
ProdomN2FMS2 
UniProtKBN2GXW3SubName: Full=Uncharacterized protein;
InterProN2GXW3 
PFAMN2GXW3 
ProdomN2GXW3 
UniProtKBN2HN77SubName: Full=Uncharacterized protein;
InterProN2HN77 
PFAMN2HN77 
ProdomN2HN77 
UniProtKBN2I3I6SubName: Full=Uncharacterized protein;
InterProN2I3I6 
PFAMN2I3I6 
ProdomN2I3I6 
UniProtKBA0A0E3KG13SubName: Full=Uncharacterized protein YfdY {ECO:0000313|EMBL:AKA91437.1};
InterProA0A0E3KG13 
PFAMA0A0E3KG13 
ProdomA0A0E3KG13 
UniProtKBA0A0E1LZX8SubName: Full=Putative inner membrane protein {ECO:0000313|EMBL:AJF57247.1};
InterProA0A0E1LZX8 
PFAMA0A0E1LZX8 
ProdomA0A0E1LZX8 
UniProtKBA0A0E0U2D0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE57539.1};
InterProA0A0E0U2D0 
PFAMA0A0E0U2D0 
ProdomA0A0E0U2D0 
UniProtKBL2Z458SubName: Full=Inner membrane protein;
InterProL2Z458 
PFAML2Z458 
ProdomL2Z458 
UniProtKBL3KIJ1SubName: Full=Inner membrane protein {ECO:0000313|EMBL:ELD98709.1};
InterProL3KIJ1 
PFAML3KIJ1 
ProdomL3KIJ1 
UniProtKBL3M631SubName: Full=Inner membrane protein;
InterProL3M631 
PFAML3M631 
ProdomL3M631 
UniProtKBA0A069Z2K0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDU53817.1};
InterProA0A069Z2K0 
PFAMA0A069Z2K0 
ProdomA0A069Z2K0 
UniProtKBA0A070YH13SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDX90376.1};
InterProA0A070YH13 
PFAMA0A070YH13 
ProdomA0A070YH13 
UniProtKBA0A071AKL4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY59734.1};
InterProA0A071AKL4 
PFAMA0A071AKL4 
ProdomA0A071AKL4 
UniProtKBA0A071BVP2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY86973.1};
InterProA0A071BVP2 
PFAMA0A071BVP2 
ProdomA0A071BVP2 
UniProtKBA0A071CA47SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDZ15006.1};
InterProA0A071CA47 
PFAMA0A071CA47 
ProdomA0A071CA47 
UniProtKBA0A079D4Z2SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY15527.1};
InterProA0A079D4Z2 
PFAMA0A079D4Z2 
ProdomA0A079D4Z2 
UniProtKBA0A079G074SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:KDY67493.1};
InterProA0A079G074 
PFAMA0A079G074 
ProdomA0A079G074 
UniProtKBN2J252SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENA31400.1};
InterProN2J252 
PFAMN2J252 
ProdomN2J252 
UniProtKBN2KSZ3SubName: Full=Uncharacterized protein;
InterProN2KSZ3 
PFAMN2KSZ3 
ProdomN2KSZ3 
UniProtKBN3J8I7SubName: Full=Uncharacterized protein;
InterProN3J8I7 
PFAMN3J8I7 
ProdomN3J8I7 
UniProtKBB1X9P9SubName: Full=Predicted inner membrane protein;
InterProB1X9P9 
PFAMB1X9P9 
ProdomB1X9P9 
UniProtKBN4DXB2SubName: Full=Uncharacterized protein;
InterProN4DXB2 
PFAMN4DXB2 
ProdomN4DXB2 
UniProtKBC4ZVR4SubName: Full=Predicted inner membrane protein;
InterProC4ZVR4 
PFAMC4ZVR4 
ProdomC4ZVR4 
UniProtKBN4E3M0SubName: Full=Uncharacterized protein;
InterProN4E3M0 
PFAMN4E3M0 
ProdomN4E3M0 
UniProtKBC9QQG0SubName: Full=Putative inner membrane protein;Flags: Precursor;
InterProC9QQG0 
PFAMC9QQG0 
ProdomC9QQG0 
UniProtKBD8BWK4SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EFI88965.1};
InterProD8BWK4 
PFAMD8BWK4 
ProdomD8BWK4 
UniProtKBN4H225SubName: Full=Uncharacterized protein;
InterProN4H225 
PFAMN4H225 
ProdomN4H225 
UniProtKBE3PEY4SubName: Full=Putative membrane protein {ECO:0000313|EMBL:CBJ02000.1};
InterProE3PEY4 
PFAME3PEY4 
ProdomE3PEY4 
UniProtKBN4HC92SubName: Full=Uncharacterized protein;
InterProN4HC92 
PFAMN4HC92 
ProdomN4HC92 
UniProtKBL4WCE7SubName: Full=Inner membrane protein;
InterProL4WCE7 
PFAML4WCE7 
ProdomL4WCE7 
UniProtKBL5G4P8SubName: Full=Inner membrane protein;
InterProL5G4P8 
PFAML5G4P8 
ProdomL5G4P8 
UniProtKBE9WVM8SubName: Full=GyfdY;
InterProE9WVM8 
PFAME9WVM8 
ProdomE9WVM8 
UniProtKBN2MZ34SubName: Full=Uncharacterized protein;
InterProN2MZ34 
PFAMN2MZ34 
ProdomN2MZ34 
UniProtKBN2PIF8SubName: Full=Uncharacterized protein;
InterProN2PIF8 
PFAMN2PIF8 
ProdomN2PIF8 
UniProtKBN2RIL8SubName: Full=Uncharacterized protein;
InterProN2RIL8 
PFAMN2RIL8 
ProdomN2RIL8 
UniProtKBN2RUR6SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENB27375.1};
InterProN2RUR6 
PFAMN2RUR6 
ProdomN2RUR6 
UniProtKBN2SW73SubName: Full=Uncharacterized protein;
InterProN2SW73 
PFAMN2SW73 
ProdomN2SW73 
UniProtKBN2TJU6SubName: Full=Uncharacterized protein;
InterProN2TJU6 
PFAMN2TJU6 
ProdomN2TJU6 
UniProtKBN2V4P6SubName: Full=Uncharacterized protein;
InterProN2V4P6 
PFAMN2V4P6 
ProdomN2V4P6 
UniProtKBN2W478SubName: Full=Uncharacterized protein;
InterProN2W478 
PFAMN2W478 
ProdomN2W478 
UniProtKBE9WHB9SubName: Full=YfdY protein;
InterProE9WHB9 
PFAME9WHB9 
ProdomE9WHB9 
UniProtKBN2QM06SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:ENB12310.1};
InterProN2QM06 
PFAMN2QM06 
ProdomN2QM06 
UniProtKBN4IE17SubName: Full=Uncharacterized protein;
InterProN4IE17 
PFAMN4IE17 
ProdomN4IE17 
UniProtKBK3IR48SubName: Full=Putative inner membrane protein;
InterProK3IR48 
PFAMK3IR48 
ProdomK3IR48 
UniProtKBI2PA10SubName: Full=Uncharacterized protein;
InterProI2PA10 
PFAMI2PA10 
ProdomI2PA10 
UniProtKBL3UH07SubName: Full=Inner membrane protein;
InterProL3UH07 
PFAML3UH07 
ProdomL3UH07 
UniProtKBL3ZRG1SubName: Full=Inner membrane protein;
InterProL3ZRG1 
PFAML3ZRG1 
ProdomL3ZRG1 
UniProtKBF9R4P5SubName: Full=Putative inner membrane protein;
InterProF9R4P5 
PFAMF9R4P5 
ProdomF9R4P5 
UniProtKBN2EVI2SubName: Full=Uncharacterized protein;
InterProN2EVI2 
PFAMN2EVI2 
ProdomN2EVI2 
UniProtKBN2MY12SubName: Full=Uncharacterized protein;
InterProN2MY12 
PFAMN2MY12 
ProdomN2MY12 
UniProtKBH0QB21SubName: Full=Predicted inner membrane protein;
InterProH0QB21 
PFAMH0QB21 
ProdomH0QB21 
UniProtKBH4VZ74SubName: Full=Putative membrane protein;
InterProH4VZ74 
PFAMH4VZ74 
ProdomH4VZ74 
UniProtKBN3AC24SubName: Full=Uncharacterized protein;
InterProN3AC24 
PFAMN3AC24 
ProdomN3AC24 
UniProtKBN3KZ17SubName: Full=Uncharacterized protein;
InterProN3KZ17 
PFAMN3KZ17 
ProdomN3KZ17 
UniProtKBN2WNR8SubName: Full=Uncharacterized protein;
InterProN2WNR8 
PFAMN2WNR8 
ProdomN2WNR8 
UniProtKBK5BWG0SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EKJ84079.1};
InterProK5BWG0 
PFAMK5BWG0 
ProdomK5BWG0 
UniProtKBI2ZU01SubName: Full=PF10810 family protein;
InterProI2ZU01 
PFAMI2ZU01 
ProdomI2ZU01 
UniProtKBN2URU4SubName: Full=Uncharacterized protein;
InterProN2URU4 
PFAMN2URU4 
ProdomN2URU4 
UniProtKBI2YKG8SubName: Full=PF10810 family protein;
InterProI2YKG8 
PFAMI2YKG8 
ProdomI2YKG8 
UniProtKBF4M5U0SubName: Full=Putative uncharacterized protein;
InterProF4M5U0 
PFAMF4M5U0 
ProdomF4M5U0 
UniProtKBN2UMK5SubName: Full=Uncharacterized protein;
InterProN2UMK5 
PFAMN2UMK5 
ProdomN2UMK5 
UniProtKBN4GMU8SubName: Full=Uncharacterized protein;
InterProN4GMU8 
PFAMN4GMU8 
ProdomN4GMU8 
UniProtKBL3QRS1SubName: Full=Inner membrane protein;
InterProL3QRS1 
PFAML3QRS1 
ProdomL3QRS1 
UniProtKBM2PGF8SubName: Full=Putative inner membrane protein;
InterProM2PGF8 
PFAMM2PGF8 
ProdomM2PGF8 
UniProtKBG2CN05SubName: Full=Putative uncharacterized protein;
InterProG2CN05 
PFAMG2CN05 
ProdomG2CN05 
UniProtKBN2YC13SubName: Full=Uncharacterized protein;
InterProN2YC13 
PFAMN2YC13 
ProdomN2YC13 
UniProtKBN4DHQ1SubName: Full=Uncharacterized protein;
InterProN4DHQ1 
PFAMN4DHQ1 
ProdomN4DHQ1 
UniProtKBI4U228SubName: Full=Putative inner membrane protein;
InterProI4U228 
PFAMI4U228 
ProdomI4U228 
UniProtKBK5HQB4SubName: Full=Uncharacterized protein;
InterProK5HQB4 
PFAMK5HQB4 
ProdomK5HQB4 
UniProtKBL3EWE7SubName: Full=Inner membrane protein;
InterProL3EWE7 
PFAML3EWE7 
ProdomL3EWE7 
UniProtKBN2W7S5SubName: Full=Uncharacterized protein;
InterProN2W7S5 
PFAMN2W7S5 
ProdomN2W7S5 
UniProtKBH4WDG0SubName: Full=Putative membrane protein;
InterProH4WDG0 
PFAMH4WDG0 
ProdomH4WDG0 
UniProtKBI0ZU38SubName: Full=Uncharacterized protein;
InterProI0ZU38 
PFAMI0ZU38 
ProdomI0ZU38 
UniProtKBI2I868SubName: Full=Putative inner membrane protein;
InterProI2I868 
PFAMI2I868 
ProdomI2I868 
UniProtKBI2R110SubName: Full=Uncharacterized protein;
InterProI2R110 
PFAMI2R110 
ProdomI2R110 
UniProtKBI2XD24SubName: Full=PF10810 family protein {ECO:0000313|EMBL:EII46894.1};
InterProI2XD24 
PFAMI2XD24 
ProdomI2XD24 
UniProtKBI2YB85SubName: Full=PF10810 family protein;
InterProI2YB85 
PFAMI2YB85 
ProdomI2YB85 
UniProtKBN4GMZ0SubName: Full=Uncharacterized protein;
InterProN4GMZ0 
PFAMN4GMZ0 
ProdomN4GMZ0 
UniProtKBI4J3E9SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EIF83758.1};
InterProI4J3E9 
PFAMI4J3E9 
ProdomI4J3E9 
UniProtKBN4FNC0SubName: Full=Uncharacterized protein;
InterProN4FNC0 
PFAMN4FNC0 
ProdomN4FNC0 
UniProtKBH4UM00SubName: Full=Putative membrane protein {ECO:0000313|EMBL:EHV56958.1};
InterProH4UM00 
PFAMH4UM00 
ProdomH4UM00 
UniProtKBN2SE37SubName: Full=Uncharacterized protein;
InterProN2SE37 
PFAMN2SE37 
ProdomN2SE37 
UniProtKBM9GNJ0SubName: Full=Uncharacterized protein;
InterProM9GNJ0 
PFAMM9GNJ0 
ProdomM9GNJ0 
UniProtKBL3VCV9SubName: Full=Inner membrane protein;
InterProL3VCV9 
PFAML3VCV9 
ProdomL3VCV9 
UniProtKBL3VQ73SubName: Full=Inner membrane protein;
InterProL3VQ73 
PFAML3VQ73 
ProdomL3VQ73 
UniProtKBL4KDP8SubName: Full=Inner membrane protein;
InterProL4KDP8 
PFAML4KDP8 
ProdomL4KDP8 
UniProtKBL4NZC9SubName: Full=Inner membrane protein;
InterProL4NZC9 
PFAML4NZC9 
ProdomL4NZC9 
UniProtKBL8C790SubName: Full=Uncharacterized protein;
InterProL8C790 
PFAML8C790 
ProdomL8C790 
UniProtKBG0FEW6SubName: Full=Uncharacterized protein yfdY {ECO:0000313|EMBL:AEJ57603.1};
InterProG0FEW6 
PFAMG0FEW6 
ProdomG0FEW6 
UniProtKBG2AXE5SubName: Full=Putative uncharacterized protein;
InterProG2AXE5 
PFAMG2AXE5 
ProdomG2AXE5 
UniProtKBM9H256SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EMX31192.1};
InterProM9H256 
PFAMM9H256 
ProdomM9H256 
UniProtKBG2EZB7SubName: Full=Putative inner membrane protein;
InterProG2EZB7 
PFAMG2EZB7 
ProdomG2EZB7 
UniProtKBK3INV2SubName: Full=Putative inner membrane protein;
InterProK3INV2 
PFAMK3INV2 
ProdomK3INV2