University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P76524.1
Original Database ID ref NP_416886.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation ypdf_ecoli recname: full=aminopeptidase
ypdf
Sequence Length 361

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region2-360
Protein Length361
Template PDB Code5cnxA
Template Region2-360
Sequence Identity100%
E-Value0
GA3411
MPQS2.21656
z-DOPE-1.33
TSVMod MethodMSALL
TSVMod RMSD0.297
TSVMod NO350.96
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB5cnx
DBALI5cnxA 
JenaImageLibrary5cnx 
Target Sequence
UniProtKBI0ZU29SubName: Full=Putative peptidase;
InterProI0ZU29 
PFAMI0ZU29 
ProdomI0ZU29 
UniProtKBB1X9Q7SubName: Full=Predicted peptidase;
InterProB1X9Q7 
PFAMB1X9Q7 
ProdomB1X9Q7 
UniProtKBC4ZVS2SubName: Full=Predicted peptidase;
InterProC4ZVS2 
PFAMC4ZVS2 
ProdomC4ZVS2 
UniProtKBA0A0G3HQM8SubName: Full=Xaa-Pro aminopeptidase protein {ECO:0000313|EMBL:AKK15624.1};
InterProA0A0G3HQM8 
PFAMA0A0G3HQM8 
ProdomA0A0G3HQM8 
UniProtKBC9QQF2SubName: Full=Aminopeptidase;SubName: Full=Peptidase M24;
InterProC9QQF2 
PFAMC9QQF2 
ProdomC9QQF2 
UniProtKBF9R4N7SubName: Full=Aminopeptidase;
InterProF9R4N7 
PFAMF9R4N7 
ProdomF9R4N7 
UniProtKBG2EZA9SubName: Full=Aminopeptidase;
InterProG2EZA9 
PFAMG2EZA9 
ProdomG2EZA9 
UniProtKBH0QB29SubName: Full=Predicted peptidase;
InterProH0QB29 
PFAMH0QB29 
ProdomH0QB29 
UniProtKBA0A090HUD8SubName: Full=Aminopeptidase {ECO:0000313|EMBL:AKO57898.1};SubName: Full=Aminopeptidase ypdF;EC=3.4.11.-;
InterProA0A090HUD8 
PFAMA0A090HUD8 
ProdomA0A090HUD8 
UniProtKBP76951RecName: Full=Aminopeptidase YpdF;EC=3.4.11.-;
InterProP76951 
PFAMP76951 
ProdomP76951 
UniProtKBM2P217SubName: Full=Aminopeptidase;
InterProM2P217 
PFAMM2P217 
ProdomM2P217 
UniProtKBA0A069Z323SubName: Full=Aminopeptidase ypdF {ECO:0000313|EMBL:KDU53826.1};EC=3.4.11.- {ECO:0000313|EMBL:KDU53826.1};
InterProA0A069Z323 
PFAMA0A069Z323 
ProdomA0A069Z323 
UniProtKBA0A069XZ01SubName: Full=Aminopeptidase ypdF {ECO:0000313|EMBL:KDU32857.1};EC=3.4.11.- {ECO:0000313|EMBL:KDU32857.1};
InterProA0A069XZ01 
PFAMA0A069XZ01 
ProdomA0A069XZ01 
UniProtKBP76524RecName: Full=Aminopeptidase YpdF;EC=3.4.11.-;
InterProP76524 
PFAMP76524 
ProdomP76524 
UniProtKBC4ZVS2SubName: Full=Predicted peptidase;
InterProC4ZVS2 
PFAMC4ZVS2 
ProdomC4ZVS2 
UniProtKBB1X9Q7SubName: Full=Predicted peptidase;
InterProB1X9Q7 
PFAMB1X9Q7 
ProdomB1X9Q7 
UniProtKBA0A8F8DI43SubName: Full=Aminopeptidase {ECO:0000313|EMBL:QXZ38176.1}EC=3.4.11.- {ECO:0000313|EMBL:QXZ38176.1}
InterProA0A8F8DI43 
PFAMA0A8F8DI43 
ProdomA0A8F8DI43 
UniProtKBA0A8G1EN58SubName: Full=Aminopeptidase {ECO:0000313|EMBL:QZA04338.1}EC=3.4.11.- {ECO:0000313|EMBL:QZA04338.1}
InterProA0A8G1EN58 
PFAMA0A8G1EN58 
ProdomA0A8G1EN58 
UniProtKBA0A8F9MRZ8SubName: Full=Aminopeptidase {ECO:0000313|EMBL:QYE26955.1}EC=3.4.11.- {ECO:0000313|EMBL:QYE26955.1}
InterProA0A8F9MRZ8 
PFAMA0A8F9MRZ8 
ProdomA0A8F9MRZ8 
UniProtKBA0A2S5ZFS5SubName: Full=Aminopeptidase {ECO:0000313|EMBL:SVF20726.1}EC=3.4.-.- {ECO:0000313|EMBL:SVF20726.1}EC=3.4.11.- {ECO:0000313|EMBL:SVF20726.1}
InterProA0A2S5ZFS5 
PFAMA0A2S5ZFS5 
ProdomA0A2S5ZFS5 
UniProtKBC9QQF2SubName: Full=Aminopeptidase;SubName: Full=Peptidase M24;
InterProC9QQF2 
PFAMC9QQF2 
ProdomC9QQF2 
UniProtKBA0A5Q3TBQ8SubName: Full=Aminopeptidase {ECO:0000313|EMBL:QGL41693.1}EC=3.4.11.- {ECO:0000313|EMBL:QGL41693.1}
InterProA0A5Q3TBQ8 
PFAMA0A5Q3TBQ8 
ProdomA0A5Q3TBQ8 
UniProtKBF9R4N7SubName: Full=Aminopeptidase;
InterProF9R4N7 
PFAMF9R4N7 
ProdomF9R4N7 
UniProtKBG2EZA9SubName: Full=Aminopeptidase;
InterProG2EZA9 
PFAMG2EZA9 
ProdomG2EZA9 
UniProtKBH0QB29SubName: Full=Predicted peptidase;
InterProH0QB29 
PFAMH0QB29 
ProdomH0QB29 
UniProtKBI0ZU29SubName: Full=Putative peptidase;
InterProI0ZU29 
PFAMI0ZU29 
ProdomI0ZU29 
UniProtKBP76524.1YPDF_ECOLI RecName: Full=Aminopeptidase ypdF
InterProP76524.1 
PFAMP76524.1 
ProdomP76524.1 
UniProtKBP76524RecName: Full=Aminopeptidase YpdF;EC=3.4.11.-;
InterProP76524 
PFAMP76524 
ProdomP76524 
UniProtKBP76951RecName: Full=Aminopeptidase YpdF;EC=3.4.11.-;
InterProP76951 
PFAMP76951 
ProdomP76951 
RefSeqAP_002985.1 predicted peptidase [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_002927350.1 putative peptidase [Escherichia coli BW2952]
RefSeqNP_416886.1 Xaa-Pro aminopeptidase [Escherichia coli str. K-12 substr. MG1655]
RefSeqYP_001731320.1 peptidase [Escherichia coli str. K-12 substr. DH10B]
GenPept817579779Xaa-Pro aminopeptidase
GenPept359332714predicted peptidase
GenPept932860453Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP-specific)
GenPept899732135aminopeptidase
GenPept899727697aminopeptidase
GenPept899723342aminopeptidase
GenPept89109205 predicted peptidase [Escherichia coli str. K-12 substr. W3110]
GenPept664684689aminopeptidase
GenPept682119864Xaa-Pro aminopeptidase
GenPept687673237aminopeptidase
GenPept687677531aminopeptidase
GenPept730583594Xaa-Pro aminopeptidase
GenPept731471323Xaa-Pro aminopeptidase
GenPept732683737aminopeptidase
GenPept7430113F65012 hypothetical protein b2385 - Escherichia coli (strain K-12)
GenPept557272664aminopeptidase
GenPept549813810Xaa-Pro aminopeptidase
GenPept169889835predicted peptidase
GenPept170082000 peptidase [Escherichia coli str. K-12 substr. DH10B]
GenPept1788728Xaa-Pro aminopeptidase
GenPept20143890YPDF_ECOLI RecName: Full=Aminopeptidase ypdF
GenPept238862786predicted peptidase
GenPept238901554 putative peptidase [Escherichia coli BW2952]
GenPept260448524peptidase M24
GenPept315137021aminopeptidase
GenPept802135799Xaa-Pro aminopeptidase
GenPept808701103aminopeptidase
GenPept808735716aminopeptidase
GenPept817575637Xaa-Pro aminopeptidase
GenPept817583918Xaa-Pro aminopeptidase
GenPept817588059Xaa-Pro aminopeptidase
GenPept817592199Xaa-Pro aminopeptidase
GenPept827619641Xaa-Pro aminopeptidase protein
GenPept827622587Xaa-Pro aminopeptidase protein
GenPept85675387predicted peptidase
GenPept808731297aminopeptidase
GenPept808722980aminopeptidase
GenPept808705477aminopeptidase
GenPept808709837aminopeptidase
GenPept808714199aminopeptidase
GenPept16130317 Xaa-Pro aminopeptidase [Escherichia coli str. K-12 substr. MG1655]
GenPept808718608aminopeptidase
GenBankACR64784.1 predicted peptidase [Escherichia coli BW2952]
GenBankACB03542.1 predicted peptidase [Escherichia coli str. K-12 substr. DH10B]
GenBankAAC75444.1 Xaa-Pro aminopeptidase [Escherichia coli str. K-12 substr. MG1655]
GenBankACX38946.1 peptidase M24 [Escherichia coli DH1]