University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A024L3X5
Original Database ID ref NP_415939.2
Organism Escherichia coli, Shigella boydii, etc.
Annotation subname: full=bacterial regulatory
helix-turn-helix , lysr family
protein {eco:0 000313|embl:cee04834.1};subname:
full=lysr family transcriptional
reg ...
Sequence Length 307

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region10-305
Protein Length307
Template PDB Code3hhgA
Template Region2-293
Sequence Identity17%
E-Value0
GA3411
MPQS1.17687
z-DOPE0.16
TSVMod MethodMSALL
TSVMod RMSD6.6
TSVMod NO350.538
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB3hhgstructure of crga, a lysr-type transcriptional regulator from neisseria meningitidis.
DBALI3hhgA 
JenaImageLibrary3hhg 
Target Sequence
UniProtKBS0YL95SubName: Full=Transcriptional regulator YdcI;
InterProS0YL95 
PFAMS0YL95 
ProdomS0YL95 
UniProtKBL3TSP1SubName: Full=Transcriptional regulator;
InterProL3TSP1 
PFAML3TSP1 
ProdomL3TSP1 
UniProtKBN2E464SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2E464 
PFAMN2E464 
ProdomN2E464 
UniProtKBB3XAI4SubName: Full=Transcriptional regulator, LysR family;
InterProB3XAI4 
PFAMB3XAI4 
ProdomB3XAI4 
UniProtKBM7VIL9SubName: Full=Putative DNA-binding transcriptional regulator;
InterProM7VIL9 
PFAMM7VIL9 
ProdomM7VIL9 
UniProtKBC4ZVG2SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC4ZVG2 
PFAMC4ZVG2 
ProdomC4ZVG2 
UniProtKBN2G0I6SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2G0I6 
PFAMN2G0I6 
ProdomN2G0I6 
UniProtKBN2EYF0SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2EYF0 
PFAMN2EYF0 
ProdomN2EYF0 
UniProtKBC6UH49SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProC6UH49 
PFAMC6UH49 
ProdomC6UH49 
UniProtKBC9QWT6SubName: Full=Predicted DNA-binding transcriptional regulator;SubName: Full=Transcriptional regulator, LysR family;
InterProC9QWT6 
PFAMC9QWT6 
ProdomC9QWT6 
UniProtKBD7ZMV0SubName: Full=LysR substrate binding domain protein {ECO:0000313|EMBL:EFK27771.1};
InterProD7ZMV0 
PFAMD7ZMV0 
ProdomD7ZMV0 
UniProtKBM7VSU4SubName: Full=Putative DNA-binding transcriptional regulator;
InterProM7VSU4 
PFAMM7VSU4 
ProdomM7VSU4 
UniProtKBL3VTF2SubName: Full=Transcriptional regulator;
InterProL3VTF2 
PFAML3VTF2 
ProdomL3VTF2 
UniProtKBL3RLB3SubName: Full=Transcriptional regulator;
InterProL3RLB3 
PFAML3RLB3 
ProdomL3RLB3 
UniProtKBH4X4H9SubName: Full=Bacterial regulatory helix-turn-helix, lysR family protein;
InterProH4X4H9 
PFAMH4X4H9 
ProdomH4X4H9 
UniProtKBH9USR6SubName: Full=Putative transcriptional regulator LYSR-type {ECO:0000313|EMBL:AFG40559.1};
InterProH9USR6 
PFAMH9USR6 
ProdomH9USR6 
UniProtKBS1ADF3SubName: Full=Transcriptional regulator YdcI;
InterProS1ADF3 
PFAMS1ADF3 
ProdomS1ADF3 
UniProtKBS1CT63SubName: Full=Transcriptional regulator YdcI;
InterProS1CT63 
PFAMS1CT63 
ProdomS1CT63 
UniProtKBI2YIH2SubName: Full=LysR substrate binding domain protein;
InterProI2YIH2 
PFAMI2YIH2 
ProdomI2YIH2 
UniProtKBI2ZY98SubName: Full=LysR substrate binding domain protein;
InterProI2ZY98 
PFAMI2ZY98 
ProdomI2ZY98 
UniProtKBK3HWW0SubName: Full=LysR substrate binding domain-containing protein;
InterProK3HWW0 
PFAMK3HWW0 
ProdomK3HWW0 
UniProtKBL2ZAU2SubName: Full=Transcriptional regulator;
InterProL2ZAU2 
PFAML2ZAU2 
ProdomL2ZAU2 
UniProtKBL3KS84SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ELE01104.1};
InterProL3KS84 
PFAML3KS84 
ProdomL3KS84 
UniProtKBL3QYB9SubName: Full=Transcriptional regulator;
InterProL3QYB9 
PFAML3QYB9 
ProdomL3QYB9 
UniProtKBA0A024L3X5SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:CEE04834.1};SubName: Full=LysR family transcriptional regulator {ECO:0000313|EMBL:AJB51516.1};SubName: Full=
InterProA0A024L3X5 
PFAMA0A024L3X5 
ProdomA0A024L3X5 
UniProtKBA0A069XEE1SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDU28258.1};
InterProA0A069XEE1 
PFAMA0A069XEE1 
ProdomA0A069XEE1 
UniProtKBA0A0E1M1J6SubName: Full=Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:AJF56259.1};
InterProA0A0E1M1J6 
PFAMA0A0E1M1J6 
ProdomA0A0E1M1J6 
UniProtKBA0A0E3MWI8SubName: Full=Putative HTH-type transcriptional regulator YdcI {ECO:0000313|EMBL:AKA90463.1};
InterProA0A0E3MWI8 
PFAMA0A0E3MWI8 
ProdomA0A0E3MWI8 
UniProtKBA0A0G3HP10SubName: Full=Putative DNA-binding transcriptional regulator protein {ECO:0000313|EMBL:AKK12852.1};
InterProA0A0G3HP10 
PFAMA0A0G3HP10 
ProdomA0A0G3HP10 
UniProtKBN4DXZ2SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4DXZ2 
PFAMN4DXZ2 
ProdomN4DXZ2 
UniProtKBN4EIJ6SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4EIJ6 
PFAMN4EIJ6 
ProdomN4EIJ6 
UniProtKBN4G212SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4G212 
PFAMN4G212 
ProdomN4G212 
UniProtKBN4GX50SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4GX50 
PFAMN4GX50 
ProdomN4GX50 
UniProtKBN4GYF6SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4GYF6 
PFAMN4GYF6 
ProdomN4GYF6 
UniProtKBN4HJH1SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4HJH1 
PFAMN4HJH1 
ProdomN4HJH1 
UniProtKBN4ICC1SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4ICC1 
PFAMN4ICC1 
ProdomN4ICC1 
UniProtKBA0A0E0TXV5SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AEE56418.1};
InterProA0A0E0TXV5 
PFAMA0A0E0TXV5 
ProdomA0A0E0TXV5 
UniProtKBA0A080I8N1SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEO25596.1};
InterProA0A080I8N1 
PFAMA0A080I8N1 
ProdomA0A080I8N1 
UniProtKBA0A080GTF3SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEN91055.1};
InterProA0A080GTF3 
PFAMA0A080GTF3 
ProdomA0A080GTF3 
UniProtKBA0A070SV75SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDX17713.1};
InterProA0A070SV75 
PFAMA0A070SV75 
ProdomA0A070SV75 
UniProtKBA0A071AGD2SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDY58398.1};
InterProA0A071AGD2 
PFAMA0A071AGD2 
ProdomA0A071AGD2 
UniProtKBA0A071C418SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDY84718.1};
InterProA0A071C418 
PFAMA0A071C418 
ProdomA0A071C418 
UniProtKBA0A071C7P0SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDZ12138.1};
InterProA0A071C7P0 
PFAMA0A071C7P0 
ProdomA0A071C7P0 
UniProtKBA0A071DCC3SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDZ38807.1};
InterProA0A071DCC3 
PFAMA0A071DCC3 
ProdomA0A071DCC3 
UniProtKBA0A073GVU6SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEJ69294.1};
InterProA0A073GVU6 
PFAMA0A073GVU6 
ProdomA0A073GVU6 
UniProtKBA0A073T891SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEL21707.1};
InterProA0A073T891 
PFAMA0A073T891 
ProdomA0A073T891 
UniProtKBA0A077ZMF7SubName: Full=LysR substrate and HTH 1 domain containing protei n {ECO:0000313|EMBL:CDW59855.1};
InterProA0A077ZMF7 
PFAMA0A077ZMF7 
ProdomA0A077ZMF7 
UniProtKBA0A079D0N9SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDY15783.1};
InterProA0A079D0N9 
PFAMA0A079D0N9 
ProdomA0A079D0N9 
UniProtKBA0A079F2I4SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KDY51000.1};
InterProA0A079F2I4 
PFAMA0A079F2I4 
ProdomA0A079F2I4 
UniProtKBP77171RecName: Full=Uncharacterized HTH-type transcriptional regulator YdcI;
InterProP77171 
PFAMP77171 
ProdomP77171 
UniProtKBH4UZX2SubName: Full=Bacterial regulatory helix-turn-helix, lysR family protein {ECO:0000313|EMBL:EHV61117.1};
InterProH4UZX2 
PFAMH4UZX2 
ProdomH4UZX2 
UniProtKBL3ZY14SubName: Full=Transcriptional regulator;
InterProL3ZY14 
PFAML3ZY14 
ProdomL3ZY14 
UniProtKBK3I3R6SubName: Full=LysR substrate binding domain-containing protein;
InterProK3I3R6 
PFAMK3I3R6 
ProdomK3I3R6 
UniProtKBM2PN05SubName: Full=LysR family transcriptional regulator;
InterProM2PN05 
PFAMM2PN05 
ProdomM2PN05 
UniProtKBB1XDD4SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProB1XDD4 
PFAMB1XDD4 
ProdomB1XDD4 
UniProtKBN2I6Y5SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2I6Y5 
PFAMN2I6Y5 
ProdomN2I6Y5 
UniProtKBL3VIY8SubName: Full=Transcriptional regulator;
InterProL3VIY8 
PFAML3VIY8 
ProdomL3VIY8 
UniProtKBE1HRB7SubName: Full=LysR substrate binding domain protein {ECO:0000313|EMBL:EFK89503.1};
InterProE1HRB7 
PFAME1HRB7 
ProdomE1HRB7 
UniProtKBN2Y7G9SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2Y7G9 
PFAMN2Y7G9 
ProdomN2Y7G9 
UniProtKBF4M7C2SubName: Full=Putative uncharacterized protein;
InterProF4M7C2 
PFAMF4M7C2 
ProdomF4M7C2 
UniProtKBN2KQD3SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2KQD3 
PFAMN2KQD3 
ProdomN2KQD3 
UniProtKBS0UFI1SubName: Full=Transcriptional regulator YdcI;
InterProS0UFI1 
PFAMS0UFI1 
ProdomS0UFI1 
UniProtKBS1EN71SubName: Full=Transcriptional regulator YdcI;
InterProS1EN71 
PFAMS1EN71 
ProdomS1EN71 
UniProtKBS0ZPJ1SubName: Full=Transcriptional regulator YdcI;
InterProS0ZPJ1 
PFAMS0ZPJ1 
ProdomS0ZPJ1 
UniProtKBG2B8F2SubName: Full=Putative uncharacterized protein;
InterProG2B8F2 
PFAMG2B8F2 
ProdomG2B8F2 
UniProtKBL4JT18SubName: Full=Transcriptional regulator;
InterProL4JT18 
PFAML4JT18 
ProdomL4JT18 
UniProtKBG2AUC0SubName: Full=Putative uncharacterized protein;
InterProG2AUC0 
PFAMG2AUC0 
ProdomG2AUC0 
UniProtKBL3WZJ2SubName: Full=Transcriptional regulator;
InterProL3WZJ2 
PFAML3WZJ2 
ProdomL3WZJ2 
UniProtKBD8AWR9SubName: Full=LysR substrate binding domain protein {ECO:0000313|EMBL:EFJ68706.1};
InterProD8AWR9 
PFAMD8AWR9 
ProdomD8AWR9 
UniProtKBN4F346SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4F346 
PFAMN4F346 
ProdomN4F346 
UniProtKBI2HZI8SubName: Full=LysR family transcriptional regulator;
InterProI2HZI8 
PFAMI2HZI8 
ProdomI2HZI8 
UniProtKBL4WNW3SubName: Full=Transcriptional regulator;
InterProL4WNW3 
PFAML4WNW3 
ProdomL4WNW3 
UniProtKBC5W3L1SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACT29248.1};
InterProC5W3L1 
PFAMC5W3L1 
ProdomC5W3L1 
UniProtKBN2SC64SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2SC64 
PFAMN2SC64 
ProdomN2SC64 
UniProtKBN3Q7W6SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN3Q7W6 
PFAMN3Q7W6 
ProdomN3Q7W6 
UniProtKBH0QCM4SubName: Full=Predicted DNA-binding transcriptional regulator;
InterProH0QCM4 
PFAMH0QCM4 
ProdomH0QCM4 
UniProtKBH4WAF2SubName: Full=Bacterial regulatory helix-turn-helix, lysR family protein;
InterProH4WAF2 
PFAMH4WAF2 
ProdomH4WAF2 
UniProtKBN2S2V4SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:ENB28751.1};
InterProN2S2V4 
PFAMN2S2V4 
ProdomN2S2V4 
UniProtKBE3PLS3SubName: Full=LysR-family transcriptional regulator {ECO:0000313|EMBL:CBJ00997.1};
InterProE3PLS3 
PFAME3PLS3 
ProdomE3PLS3 
UniProtKBE6AYB1SubName: Full=Uncharacterized HTH-type transcriptional regulator ydcI {ECO:0000313|EMBL:EFV00120.1};
InterProE6AYB1 
PFAME6AYB1 
ProdomE6AYB1 
UniProtKBN2WVD3SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2WVD3 
PFAMN2WVD3 
ProdomN2WVD3 
UniProtKBN3P4D8SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN3P4D8 
PFAMN3P4D8 
ProdomN3P4D8 
UniProtKBF9R2V9SubName: Full=LysR family transcriptional regulator;
InterProF9R2V9 
PFAMF9R2V9 
ProdomF9R2V9 
UniProtKBG0FF90SubName: Full=Uncharacterized HTH-type transcriptional regulator ydcI {ECO:0000313|EMBL:AEJ56464.1};
InterProG0FF90 
PFAMG0FF90 
ProdomG0FF90 
UniProtKBN4FUT7SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4FUT7 
PFAMN4FUT7 
ProdomN4FUT7 
UniProtKBG2F6W6SubName: Full=LysR family transcriptional regulator;
InterProG2F6W6 
PFAMG2F6W6 
ProdomG2F6W6 
UniProtKBN4EQ03SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4EQ03 
PFAMN4EQ03 
ProdomN4EQ03 
UniProtKBN2N9Z7SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2N9Z7 
PFAMN2N9Z7 
ProdomN2N9Z7 
UniProtKBD8AS91SubName: Full=LysR substrate binding domain protein {ECO:0000313|EMBL:EFK13995.1};
InterProD8AS91 
PFAMD8AS91 
ProdomD8AS91 
UniProtKBN2J437SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:ENA33799.1};
InterProN2J437 
PFAMN2J437 
ProdomN2J437 
UniProtKBN4EJK8SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN4EJK8 
PFAMN4EJK8 
ProdomN4EJK8 
UniProtKBI2P7W5SubName: Full=Uncharacterized protein;
InterProI2P7W5 
PFAMI2P7W5 
ProdomI2P7W5 
UniProtKBK5HUK9SubName: Full=LysR substrate binding domain-containing protein;
InterProK5HUK9 
PFAMK5HUK9 
ProdomK5HUK9 
UniProtKBL3LIN5SubName: Full=Transcriptional regulator;
InterProL3LIN5 
PFAML3LIN5 
ProdomL3LIN5 
UniProtKBL4P3Q7SubName: Full=Transcriptional regulator;
InterProL4P3Q7 
PFAML4P3Q7 
ProdomL4P3Q7 
UniProtKBM9B1F3SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProM9B1F3 
PFAMM9B1F3 
ProdomM9B1F3 
UniProtKBM9FK33SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:EMX05831.1};
InterProM9FK33 
PFAMM9FK33 
ProdomM9FK33 
UniProtKBN2H572SubName: Full=Bacterial regulatory helix-turn-helix , lysR family protein;
InterProN2H572 
PFAMN2H572 
ProdomN2H572 
UniProtKBC6EEU0SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACT29248.1};
InterProC6EEU0 
PFAMC6EEU0 
ProdomC6EEU0 
UniProtKBS0VK04SubName: Full=Transcriptional regulator YdcI {ECO:0000313|EMBL:EOU67785.1};
InterProS0VK04 
PFAMS0VK04 
ProdomS0VK04