University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P77269.1
Original Database ID ref NP_417043.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation yphf_ecoli recname: full=abc transporter
periplasmic-binding protein yphf;
flags : precursor
Sequence Length 327

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green)
or unreliable (red).
 
Target Region3-311
Protein Length327
Template PDB Code2hj9B
Template Region39-345
Sequence Identity14%
E-Value0
GA3411
MPQS1.10915
z-DOPE-0.09
TSVMod MethodMSALL
TSVMod RMSD5.706
TSVMod NO350.578
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2hj9crystal structure of the autoinducer-2-bound form of vibrio harveyi luxp complexed with the periplasmic domain of luxq
DBALI2hj9B 
CATH3.40.50.2300 Domain: 2hj9B01 Rossmann fold (90%)
CATH3.40.50.2300 Domain: 2hj9B02 Rossmann fold (91%)
JenaImageLibrary2hj9 
Target Sequence
UniProtKBG2F0V2SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily protein;
InterProG2F0V2 
PFAMG2F0V2 
ProdomG2F0V2 
UniProtKBA0A069YZL5SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDU52787.1};
InterProA0A069YZL5 
PFAMA0A069YZL5 
ProdomA0A069YZL5 
UniProtKBA0A070SU99SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDX20359.1};
InterProA0A070SU99 
PFAMA0A070SU99 
ProdomA0A070SU99 
UniProtKBA0A071AKC3SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDY59477.1};
InterProA0A071AKC3 
PFAMA0A071AKC3 
ProdomA0A071AKC3 
UniProtKBA0A071C0Q7SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDY90423.1};
InterProA0A071C0Q7 
PFAMA0A071C0Q7 
ProdomA0A071C0Q7 
UniProtKBA0A071CV01SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDZ18487.1};
InterProA0A071CV01 
PFAMA0A071CV01 
ProdomA0A071CV01 
UniProtKBA0A071D542SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDZ36138.1};
InterProA0A071D542 
PFAMA0A071D542 
ProdomA0A071D542 
UniProtKBA0A073GV63SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KEJ68831.1};
InterProA0A073GV63 
PFAMA0A073GV63 
ProdomA0A073GV63 
UniProtKBA0A073TDI1SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KEL24905.1};
InterProA0A073TDI1 
PFAMA0A073TDI1 
ProdomA0A073TDI1 
UniProtKBA0A069XKX8SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDU30796.1};
InterProA0A069XKX8 
PFAMA0A069XKX8 
ProdomA0A069XKX8 
UniProtKBS0UQZ2SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:EOU57640.1};
InterProS0UQZ2 
PFAMS0UQZ2 
ProdomS0UQZ2 
UniProtKBL3ZN39SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL3ZN39 
PFAML3ZN39 
ProdomL3ZN39 
UniProtKBL4NYJ6SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL4NYJ6 
PFAML4NYJ6 
ProdomL4NYJ6 
UniProtKBL8BWH8SubName: Full=Predicted sugar ABC transport system, periplasmic binding protein YphF;
InterProL8BWH8 
PFAML8BWH8 
ProdomL8BWH8 
UniProtKBM7UL10SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily;
InterProM7UL10 
PFAMM7UL10 
ProdomM7UL10 
UniProtKBM8YVC3SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProM8YVC3 
PFAMM8YVC3 
ProdomM8YVC3 
UniProtKBM9GFL9SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:EMX31364.1};
InterProM9GFL9 
PFAMM9GFL9 
ProdomM9GFL9 
UniProtKBP77269RecName: Full=ABC transporter periplasmic-binding protein YphF;Flags: Precursor;
InterProP77269 
PFAMP77269 
ProdomP77269 
UniProtKBT9N4X2SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT9N4X2 
PFAMT9N4X2 
ProdomT9N4X2 
UniProtKBA0A079F598SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDY51924.1};
InterProA0A079F598 
PFAMA0A079F598 
ProdomA0A079F598 
UniProtKBA0A079FUB9SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDY62051.1};
InterProA0A079FUB9 
PFAMA0A079FUB9 
ProdomA0A079FUB9 
UniProtKBB1XB23SubName: Full=Predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily;
InterProB1XB23 
PFAMB1XB23 
ProdomB1XB23 
UniProtKBC4ZXC3SubName: Full=Predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily;
InterProC4ZXC3 
PFAMC4ZXC3 
ProdomC4ZXC3 
UniProtKBC9QPM5SubName: Full=Periplasmic binding protein/LacI transcriptional regulator;SubName: Full=Putative sugar transporter subunit, periplasmic-binding component of ABC superfamily;Flags: Precursor;
InterProC9QPM5 
PFAMC9QPM5 
ProdomC9QPM5 
UniProtKBD8BUT5SubName: Full=Sugar-binding domain protein {ECO:0000313|EMBL:EFI89600.1};
InterProD8BUT5 
PFAMD8BUT5 
ProdomD8BUT5 
UniProtKBT9U3I6SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT9U3I6 
PFAMT9U3I6 
ProdomT9U3I6 
UniProtKBF4SHZ5SubName: Full=ABC transporter periplasmic-binding protein YphF {ECO:0000313|EMBL:EGI12188.1};
InterProF4SHZ5 
PFAMF4SHZ5 
ProdomF4SHZ5 
UniProtKBF9QVH7SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily protein;
InterProF9QVH7 
PFAMF9QVH7 
ProdomF9QVH7 
UniProtKBG2CNM3SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProG2CNM3 
PFAMG2CNM3 
ProdomG2CNM3 
UniProtKBT8YXG1SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT8YXG1 
PFAMT8YXG1 
ProdomT8YXG1 
UniProtKBH4VZP7SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProH4VZP7 
PFAMH4VZP7 
ProdomH4VZP7 
UniProtKBA0A079H9B0SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:KDY97721.1};
InterProA0A079H9B0 
PFAMA0A079H9B0 
ProdomA0A079H9B0 
UniProtKBA0A094Y4U3SubName: Full=ABC transporter periplasmic-binding protein YphF {ECO:0000313|EMBL:KLX53032.1};SubName: Full=Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJB52661.1};
InterProA0A094Y4U3 
PFAMA0A094Y4U3 
ProdomA0A094Y4U3 
UniProtKBA0A0E3N290SubName: Full=ABC transporter periplasmic-binding protein YphF {ECO:0000313|EMBL:AKA91645.1};
InterProA0A0E3N290 
PFAMA0A0E3N290 
ProdomA0A0E3N290 
UniProtKBA0A0G3HU59SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily protein {ECO:0000313|EMBL:AKK15493.1};
InterProA0A0G3HU59 
PFAMA0A0G3HU59 
ProdomA0A0G3HU59 
UniProtKBU0DD53SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProU0DD53 
PFAMU0DD53 
ProdomU0DD53 
UniProtKBU0E0F4SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProU0E0F4 
PFAMU0E0F4 
ProdomU0E0F4 
UniProtKBH0Q905SubName: Full=Predicted sugar transporter subunit;
InterProH0Q905 
PFAMH0Q905 
ProdomH0Q905 
UniProtKBH4VJQ7SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProH4VJQ7 
PFAMH4VJQ7 
ProdomH4VJQ7 
UniProtKBL3VQ64SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL3VQ64 
PFAML3VQ64 
ProdomL3VQ64 
UniProtKBL3QU01SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL3QU01 
PFAML3QU01 
ProdomL3QU01 
UniProtKBL3WS92SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL3WS92 
PFAML3WS92 
ProdomL3WS92 
UniProtKBL3VAW6SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL3VAW6 
PFAML3VAW6 
ProdomL3VAW6 
UniProtKBL2Z4D2SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL2Z4D2 
PFAML2Z4D2 
ProdomL2Z4D2 
UniProtKBI2Y9R0SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2Y9R0 
PFAMI2Y9R0 
ProdomI2Y9R0 
UniProtKBI2I7L4SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily protein;
InterProI2I7L4 
PFAMI2I7L4 
ProdomI2I7L4 
UniProtKBT8ACF7SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT8ACF7 
PFAMT8ACF7 
ProdomT8ACF7 
UniProtKBS1KBU7SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProS1KBU7 
PFAMS1KBU7 
ProdomS1KBU7 
UniProtKBT9JAV4SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT9JAV4 
PFAMT9JAV4 
ProdomT9JAV4 
UniProtKBI2ZTQ6SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2ZTQ6 
PFAMI2ZTQ6 
ProdomI2ZTQ6 
UniProtKBL3KHY4SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:ELD98490.1};
InterProL3KHY4 
PFAML3KHY4 
ProdomL3KHY4 
UniProtKBT9JB46SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT9JB46 
PFAMT9JB46 
ProdomT9JB46 
UniProtKBS1JX32SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProS1JX32 
PFAMS1JX32 
ProdomS1JX32 
UniProtKBS0XTX7SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProS0XTX7 
PFAMS0XTX7 
ProdomS0XTX7 
UniProtKBI4U155SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily protein;
InterProI4U155 
PFAMI4U155 
ProdomI4U155 
UniProtKBP76994RecName: Full=ABC transporter periplasmic-binding protein YphF;Flags: Precursor;
InterProP76994 
PFAMP76994 
ProdomP76994 
UniProtKBL4WBH1SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL4WBH1 
PFAML4WBH1 
ProdomL4WBH1 
UniProtKBM2MQN2SubName: Full=Putative sugar transporter subunit, periplasmic-binding component of ABC superfamily protein;
InterProM2MQN2 
PFAMM2MQN2 
ProdomM2MQN2 
UniProtKBM7W7Q5SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily;
InterProM7W7Q5 
PFAMM7W7Q5 
ProdomM7W7Q5 
UniProtKBL3TJY0SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProL3TJY0 
PFAML3TJY0 
ProdomL3TJY0 
UniProtKBK3IM25SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProK3IM25 
PFAMK3IM25 
ProdomK3IM25 
UniProtKBI2YJ27SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2YJ27 
PFAMI2YJ27 
ProdomI2YJ27 
UniProtKBH4WE58SubName: Full=Periplasmic binding s and sugar binding domain of the LacI family protein;
InterProH4WE58 
PFAMH4WE58 
ProdomH4WE58 
UniProtKBI2R1G4SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProI2R1G4 
PFAMI2R1G4 
ProdomI2R1G4 
UniProtKBI2PBZ8SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProI2PBZ8 
PFAMI2PBZ8 
ProdomI2PBZ8 
UniProtKBW1BQU1SubName: Full=Predicted sugar ABC transport system, periplasmic binding protein YphF {ECO:0000313|EMBL:CDK82387.1};
InterProW1BQU1 
PFAMW1BQU1 
ProdomW1BQU1 
UniProtKBT8Y572SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:EQX50669.1};
InterProT8Y572 
PFAMT8Y572 
ProdomT8Y572 
UniProtKBS0ZYC5SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProS0ZYC5 
PFAMS0ZYC5 
ProdomS0ZYC5 
UniProtKBS1CA58SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProS1CA58 
PFAMS1CA58 
ProdomS1CA58 
UniProtKBS1L2V1SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProS1L2V1 
PFAMS1L2V1 
ProdomS1L2V1 
UniProtKBS0U6S5SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProS0U6S5 
PFAMS0U6S5 
ProdomS0U6S5 
UniProtKBT7JYB3SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT7JYB3 
PFAMT7JYB3 
ProdomT7JYB3 
UniProtKBT9MMN2SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT9MMN2 
PFAMT9MMN2 
ProdomT9MMN2 
UniProtKBT8SAW0SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProT8SAW0 
PFAMT8SAW0 
ProdomT8SAW0 
UniProtKBC4ZXC3SubName: Full=Predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily;
InterProC4ZXC3 
PFAMC4ZXC3 
ProdomC4ZXC3 
UniProtKBA0A8F9MRU8SubName: Full=Substrate-binding domain-containing protein {ECO:0000313|EMBL:QYE26805.1}
InterProA0A8F9MRU8 
PFAMA0A8F9MRU8 
ProdomA0A8F9MRU8 
UniProtKBG2CNM3SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProG2CNM3 
PFAMG2CNM3 
ProdomG2CNM3 
UniProtKBH0Q905SubName: Full=Predicted sugar transporter subunit;
InterProH0Q905 
PFAMH0Q905 
ProdomH0Q905 
UniProtKBG2F0V2SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily protein;
InterProG2F0V2 
PFAMG2F0V2 
ProdomG2F0V2 
UniProtKBD8BUT5SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProD8BUT5 
PFAMD8BUT5 
ProdomD8BUT5 
UniProtKBF4SHZ5SubName: Full=ABC transporter periplasmic-binding protein YphF;
InterProF4SHZ5 
PFAMF4SHZ5 
ProdomF4SHZ5 
UniProtKBF9QVH7SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily protein;
InterProF9QVH7 
PFAMF9QVH7 
ProdomF9QVH7 
UniProtKBC9QPM5SubName: Full=Periplasmic binding protein/LacI transcriptional regulator;SubName: Full=Putative sugar transporter subunit, periplasmic-binding component of ABC superfamily;Flags: Precursor;
InterProC9QPM5 
PFAMC9QPM5 
ProdomC9QPM5 
UniProtKBB1XB23SubName: Full=Predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily;
InterProB1XB23 
PFAMB1XB23 
ProdomB1XB23 
UniProtKBI2ZTQ6SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2ZTQ6 
PFAMI2ZTQ6 
ProdomI2ZTQ6 
UniProtKBI2Y9R0SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2Y9R0 
PFAMI2Y9R0 
ProdomI2Y9R0 
UniProtKBI2YJ27SubName: Full=Periplasmic binding protein and sugar binding domain of the LacI family protein;
InterProI2YJ27 
PFAMI2YJ27 
ProdomI2YJ27 
UniProtKBI2R1G4SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProI2R1G4 
PFAMI2R1G4 
ProdomI2R1G4 
UniProtKBA0A7B5I933SubName: Full=ABC transporter substrate-binding protein {ECO:0000313|EMBL:HAJ6401553.1}
InterProA0A7B5I933 
PFAMA0A7B5I933 
ProdomA0A7B5I933 
UniProtKBA0A7Z8BNQ5SubName: Full=ABC transporter substrate-binding protein {ECO:0000313|EMBL:TFB44816.1}
InterProA0A7Z8BNQ5 
PFAMA0A7Z8BNQ5 
ProdomA0A7Z8BNQ5 
UniProtKBA0A829FEE6SubName: Full=ABC transporter periplasmic-binding protein yphF {ECO:0000313|EMBL:EOU57640.1}
InterProA0A829FEE6 
PFAMA0A829FEE6 
ProdomA0A829FEE6 
UniProtKBA0A854NUQ8SubName: Full=ABC transporter substrate-binding protein {ECO:0000313|EMBL:OWR23100.1}
InterProA0A854NUQ8 
PFAMA0A854NUQ8 
ProdomA0A854NUQ8 
UniProtKBA0A8A5HF84SubName: Full=Substrate-binding domain-containing protein {ECO:0000313|EMBL:QTF27555.1}
InterProA0A8A5HF84 
PFAMA0A8A5HF84 
ProdomA0A8A5HF84 
UniProtKBA0A8A5HUQ1SubName: Full=Substrate-binding domain-containing protein {ECO:0000313|EMBL:QTF32166.1}
InterProA0A8A5HUQ1 
PFAMA0A8A5HUQ1 
ProdomA0A8A5HUQ1 
UniProtKBA0A8E2P041SubName: Full=ABC transporter substrate-binding protein {ECO:0000313|EMBL:PAY94585.1}
InterProA0A8E2P041 
PFAMA0A8E2P041 
ProdomA0A8E2P041 
UniProtKBA0A8F8DHU2SubName: Full=Substrate-binding domain-containing protein {ECO:0000313|EMBL:QXZ38026.1}
InterProA0A8F8DHU2 
PFAMA0A8F8DHU2 
ProdomA0A8F8DHU2 
UniProtKBA0A8F9I2G3SubName: Full=Substrate-binding domain-containing protein {ECO:0000313|EMBL:QYE40656.1}
InterProA0A8F9I2G3 
PFAMA0A8F9I2G3 
ProdomA0A8F9I2G3 
UniProtKBH4VJQ7SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProH4VJQ7 
PFAMH4VJQ7 
ProdomH4VJQ7 
UniProtKBH4VZP7SubName: Full=ABC transporter periplasmic-binding protein yphF;
InterProH4VZP7 
PFAMH4VZP7 
ProdomH4VZP7 
UniProtKBI4U155SubName: Full=Putative sugar transporter subunit: periplasmic-binding component of ABC superfamily protein;
InterProI4U155 
PFAMI4U155 
ProdomI4U155