University of California San Francisco | About UCSF | UCSF Benioff Children's Hospital San Francisco

ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link A0A024L2Y8
Original Database ID ref YP_025301.1
Organism Escherichia coli, Shigella boydii, etc.
Annotation subname: full=small toxic polypeptide
{eco:0000313|embl:cdp71577.1};subname:
ful l=strain o157 svetec scaffold24.1,
whole genome shotgun sequence
{eco ...
Sequence Length 49

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

The calculation typically takes 1-2 days, and the results will be added to this page. Registered users will receive an email notification.

Information for additional models of this sequences are available by clicking on the model thumbnails below.  

Model Information

Perform action on this model:

Quality criteria indicate whether the model is considered
reliable (green) or unreliable (red).
 
Target Region8-43
Protein Length49
Template PDB Code2wy3B
Template Region54-102
Sequence Identity22%
E-Value0
GA3410.03
MPQS0.291994
z-DOPE2.94
TSVMod MethodMSALL
TSVMod RMSD10.248
TSVMod NO350.061
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

Mouse over the images for more information

Sequence Model Coverage Summary
for all Models of this Sequence:

Filtered models for current sequence (Show all models)

 

Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB2wy3structure of the hcmv ul16-micb complex elucidates select binding of a viral immunoevasin to diverse nkg2d ligands
DBALI2wy3B 
JenaImageLibrary2wy3 
Target Sequence
UniProtKBT9YP00SubName: Full=Protein hokC;
InterProT9YP00 
PFAMT9YP00 
ProdomT9YP00 
UniProtKBA0A0E1LWU3SubName: Full=Small toxic membrane polypeptide {ECO:0000313|EMBL:AJF56256.1};
InterProA0A0E1LWU3 
PFAMA0A0E1LWU3 
ProdomA0A0E1LWU3 
UniProtKBA0A0E2A4F5SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EIL42795.1};
InterProA0A0E2A4F5 
PFAMA0A0E2A4F5 
ProdomA0A0E2A4F5 
UniProtKBA0A0E3MZ93SubName: Full=Protein HokB {ECO:0000313|EMBL:AKA90460.1};
InterProA0A0E3MZ93 
PFAMA0A0E3MZ93 
ProdomA0A0E3MZ93 
UniProtKBA0A0G2XCL5SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:AKI66761.1};
InterProA0A0G2XCL5 
PFAMA0A0G2XCL5 
ProdomA0A0G2XCL5 
UniProtKBA0A0H7VRD5SubName: Full=Protein HokB {ECO:0000313|EMBL:CSF89120.1};
InterProA0A0H7VRD5 
PFAMA0A0H7VRD5 
ProdomA0A0H7VRD5 
UniProtKBE6NUP3SubName: Full=Small toxic polypeptide;
InterProE6NUP3 
PFAME6NUP3 
ProdomE6NUP3 
UniProtKBE6BQM0SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFU33484.1};
InterProE6BQM0 
PFAME6BQM0 
ProdomE6BQM0 
UniProtKBH0QCM1SubName: Full=Toxic polypeptide, small;
InterProH0QCM1 
PFAMH0QCM1 
ProdomH0QCM1 
UniProtKBG2F6W8SubName: Full=Small toxic polypeptide;
InterProG2F6W8 
PFAMG2F6W8 
ProdomG2F6W8 
UniProtKBH9YJB8SubName: Full=Small toxic polypeptide;
InterProH9YJB8 
PFAMH9YJB8 
ProdomH9YJB8 
UniProtKBA0A028E139SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EZE53585.1};
InterProA0A028E139 
PFAMA0A028E139 
ProdomA0A028E139 
UniProtKBA0A028BMS0SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EZE24752.1};
InterProA0A028BMS0 
PFAMA0A028BMS0 
ProdomA0A028BMS0 
UniProtKBC6VCK9SubName: Full=Small toxic membrane polypeptide;SubName: Full=Toxic polypeptide, small;
InterProC6VCK9 
PFAMC6VCK9 
ProdomC6VCK9 
UniProtKBV0ZWY3SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:ESD99047.1};
InterProV0ZWY3 
PFAMV0ZWY3 
ProdomV0ZWY3 
UniProtKBC8U897SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:BAI30375.1};
InterProC8U897 
PFAMC8U897 
ProdomC8U897 
UniProtKBC8UPL6SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:BAI35716.1};
InterProC8UPL6 
PFAMC8UPL6 
ProdomC8UPL6 
UniProtKBD7XGD2SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFJ89580.1};
InterProD7XGD2 
PFAMD7XGD2 
ProdomD7XGD2 
UniProtKBD7YF65SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFK04046.1};
InterProD7YF65 
PFAMD7YF65 
ProdomD7YF65 
UniProtKBD8AS93SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFK13997.1};
InterProD8AS93 
PFAMD8AS93 
ProdomD8AS93 
UniProtKBD8E9D3SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFK45289.1};
InterProD8E9D3 
PFAMD8E9D3 
ProdomD8E9D3 
UniProtKBD8EUC2SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFK48796.1};
InterProD8EUC2 
PFAMD8EUC2 
ProdomD8EUC2 
UniProtKBP77494RecName: Full=Protein HokB;
InterProP77494 
PFAMP77494 
ProdomP77494 
UniProtKBF9R2W1SubName: Full=Small toxic polypeptide;
InterProF9R2W1 
PFAMF9R2W1 
ProdomF9R2W1 
UniProtKBE1J9C5SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFK67518.1};
InterProE1J9C5 
PFAME1J9C5 
ProdomE1J9C5 
UniProtKBI4Q5M3SubName: Full=Small toxic polypeptide;
InterProI4Q5M3 
PFAMI4Q5M3 
ProdomI4Q5M3 
UniProtKBM5IHM5SubName: Full=Small toxic polypeptide;
InterProM5IHM5 
PFAMM5IHM5 
ProdomM5IHM5 
UniProtKBM2N1X3SubName: Full=Small toxic polypeptide;
InterProM2N1X3 
PFAMM2N1X3 
ProdomM2N1X3 
UniProtKBK4VJ64SubName: Full=Small toxic polypeptide;
InterProK4VJ64 
PFAMK4VJ64 
ProdomK4VJ64 
UniProtKBE1I0A5SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFK74240.1};
InterProE1I0A5 
PFAME1I0A5 
ProdomE1I0A5 
UniProtKBU1HYG1SubName: Full=Protein hokC;
InterProU1HYG1 
PFAMU1HYG1 
ProdomU1HYG1 
UniProtKBU9YIR5SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:ESA69320.1};
InterProU9YIR5 
PFAMU9YIR5 
ProdomU9YIR5 
UniProtKBB1XDD1SubName: Full=Toxic polypeptide, small;
InterProB1XDD1 
PFAMB1XDD1 
ProdomB1XDD1 
UniProtKBC4ZVF9SubName: Full=Toxic polypeptide, small;
InterProC4ZVF9 
PFAMC4ZVF9 
ProdomC4ZVF9 
UniProtKBV0T3U0SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:ESD15352.1};
InterProV0T3U0 
PFAMV0T3U0 
ProdomV0T3U0 
UniProtKBC6UH46SubName: Full=Toxic polypeptide, small;
InterProC6UH46 
PFAMC6UH46 
ProdomC6UH46 
UniProtKBM2PHU6SubName: Full=Small toxic polypeptide;
InterProM2PHU6 
PFAMM2PHU6 
ProdomM2PHU6 
UniProtKBM4JLW9SubName: Full=Small toxic polypeptide;
InterProM4JLW9 
PFAMM4JLW9 
ProdomM4JLW9 
UniProtKBI4QVN5SubName: Full=Small toxic polypeptide;
InterProI4QVN5 
PFAMI4QVN5 
ProdomI4QVN5 
UniProtKBI4PLL7SubName: Full=Small toxic polypeptide;
InterProI4PLL7 
PFAMI4PLL7 
ProdomI4PLL7 
UniProtKBI4UH41SubName: Full=Small toxic polypeptide;
InterProI4UH41 
PFAMI4UH41 
ProdomI4UH41 
UniProtKBI4TUE6SubName: Full=Small toxic polypeptide;
InterProI4TUE6 
PFAMI4TUE6 
ProdomI4TUE6 
UniProtKBK0BMP2SubName: Full=Small toxic polypeptide;
InterProK0BMP2 
PFAMK0BMP2 
ProdomK0BMP2 
UniProtKBI4TLX4SubName: Full=Small toxic polypeptide;
InterProI4TLX4 
PFAMI4TLX4 
ProdomI4TLX4 
UniProtKBI4NM85SubName: Full=Small toxic polypeptide;
InterProI4NM85 
PFAMI4NM85 
ProdomI4NM85 
UniProtKBK4WRE2SubName: Full=Small toxic polypeptide;
InterProK4WRE2 
PFAMK4WRE2 
ProdomK4WRE2 
UniProtKBK4W4B1SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EJE75222.1};
InterProK4W4B1 
PFAMK4W4B1 
ProdomK4W4B1 
UniProtKBK4VMR9SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EJE68512.1};
InterProK4VMR9 
PFAMK4VMR9 
ProdomK4VMR9 
UniProtKBV0YAU1SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:ESD78086.1};
InterProV0YAU1 
PFAMV0YAU1 
ProdomV0YAU1 
UniProtKBA0A025GEK2SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EYV62678.1};
InterProA0A025GEK2 
PFAMA0A025GEK2 
ProdomA0A025GEK2 
UniProtKBA0A0E2TZ44SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EYV05422.1};
InterProA0A0E2TZ44 
PFAMA0A0E2TZ44 
ProdomA0A0E2TZ44 
UniProtKBF9CHF2SubName: Full=Small toxic polypeptide;
InterProF9CHF2 
PFAMF9CHF2 
ProdomF9CHF2 
UniProtKBI2HZJ0SubName: Full=Small toxic polypeptide;
InterProI2HZJ0 
PFAMI2HZJ0 
ProdomI2HZJ0 
UniProtKBI4SIA1SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EIL50192.1};
InterProI4SIA1 
PFAMI4SIA1 
ProdomI4SIA1 
UniProtKBK4UU27SubName: Full=Small toxic polypeptide;
InterProK4UU27 
PFAMK4UU27 
ProdomK4UU27 
UniProtKBL3UX33SubName: Full=Protein hokB;
InterProL3UX33 
PFAML3UX33 
ProdomL3UX33 
UniProtKBN6WLG8SubName: Full=Toxic polypeptide, small;
InterProN6WLG8 
PFAMN6WLG8 
ProdomN6WLG8 
UniProtKBV0RRF5SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:ESC90097.1};
InterProV0RRF5 
PFAMV0RRF5 
ProdomV0RRF5 
UniProtKBC5W3K8SubName: Full=Small toxic membrane polypeptide;SubName: Full=Toxic polypeptide, small;
InterProC5W3K8 
PFAMC5W3K8 
ProdomC5W3K8 
UniProtKBC8TRE6SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:BAI25296.1};
InterProC8TRE6 
PFAMC8TRE6 
ProdomC8TRE6 
UniProtKBA0A027THX5SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EZD24885.1};
InterProA0A027THX5 
PFAMA0A027THX5 
ProdomA0A027THX5 
UniProtKBD7XXY9SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFJ99739.1};
InterProD7XXY9 
PFAMD7XXY9 
ProdomD7XXY9 
UniProtKBV8F9I7SubName: Full=Protein hokB {ECO:0000313|EMBL:ETD60795.1};
InterProV8F9I7 
PFAMV8F9I7 
ProdomV8F9I7 
UniProtKBU1HZU9SubName: Full=Protein hokC;
InterProU1HZU9 
PFAMU1HZU9 
ProdomU1HZU9 
UniProtKBA0A026H1L6SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EYY76043.1};
InterProA0A026H1L6 
PFAMA0A026H1L6 
ProdomA0A026H1L6 
UniProtKBI4PQ65SubName: Full=Small toxic polypeptide;
InterProI4PQ65 
PFAMI4PQ65 
ProdomI4PQ65 
UniProtKBU0ZJ51SubName: Full=Protein hokC;
InterProU0ZJ51 
PFAMU0ZJ51 
ProdomU0ZJ51 
UniProtKBA0A024L2Y8SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:CDP71577.1};SubName: Full=Strain O157 SvETEC scaffold24.1, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ45524.1};
InterProA0A024L2Y8 
PFAMA0A024L2Y8 
ProdomA0A024L2Y8 
UniProtKBA0A026UH49SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EZA29013.1};
InterProA0A026UH49 
PFAMA0A026UH49 
ProdomA0A026UH49 
UniProtKBF8YFD4SubName: Full=Small toxic polypeptide;
InterProF8YFD4 
PFAMF8YFD4 
ProdomF8YFD4 
UniProtKBI4RX54SubName: Full=Small toxic polypeptide;
InterProI4RX54 
PFAMI4RX54 
ProdomI4RX54 
UniProtKBK4XFI6SubName: Full=Small toxic polypeptide;
InterProK4XFI6 
PFAMK4XFI6 
ProdomK4XFI6 
UniProtKBU9ZJJ8SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:ESA85022.1};
InterProU9ZJJ8 
PFAMU9ZJJ8 
ProdomU9ZJJ8 
UniProtKBT2FXN4SubName: Full=Protein hokC;
InterProT2FXN4 
PFAMT2FXN4 
ProdomT2FXN4 
UniProtKBI4RWD6SubName: Full=Small toxic polypeptide;
InterProI4RWD6 
PFAMI4RWD6 
ProdomI4RWD6 
UniProtKBE1IYD1SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFO55696.1};
InterProE1IYD1 
PFAME1IYD1 
ProdomE1IYD1 
UniProtKBE1HRB9SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFK89505.1};
InterProE1HRB9 
PFAME1HRB9 
ProdomE1HRB9 
UniProtKBI4NJ98SubName: Full=Small toxic polypeptide;
InterProI4NJ98 
PFAMI4NJ98 
ProdomI4NJ98 
UniProtKBJ9ZMH5SubName: Full=Small toxic polypeptide;
InterProJ9ZMH5 
PFAMJ9ZMH5 
ProdomJ9ZMH5 
UniProtKBM5HU88SubName: Full=Small toxic polypeptide;
InterProM5HU88 
PFAMM5HU88 
ProdomM5HU88 
UniProtKBK0APA7SubName: Full=Small toxic polypeptide;
InterProK0APA7 
PFAMK0APA7 
ProdomK0APA7 
UniProtKBM5HTR4SubName: Full=Small toxic polypeptide;
InterProM5HTR4 
PFAMM5HTR4 
ProdomM5HTR4 
UniProtKBK4WTG5SubName: Full=Small toxic polypeptide;
InterProK4WTG5 
PFAMK4WTG5 
ProdomK4WTG5 
UniProtKBH9Y176SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:AFH11178.1};
InterProH9Y176 
PFAMH9Y176 
ProdomH9Y176 
UniProtKBH4FGC6SubName: Full=Small toxic polypeptide;
InterProH4FGC6 
PFAMH4FGC6 
ProdomH4FGC6 
UniProtKBD7ZMV2SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFK27773.1};
InterProD7ZMV2 
PFAMD7ZMV2 
ProdomD7ZMV2 
UniProtKBD8AWS1SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:EFJ68708.1};
InterProD8AWS1 
PFAMD8AWS1 
ProdomD8AWS1 
UniProtKBV0SPD8SubName: Full=Hok/gef family protein {ECO:0000313|EMBL:ESD10292.1};
InterProV0SPD8 
PFAMV0SPD8 
ProdomV0SPD8 
UniProtKBA0A027ZP55SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EZE00621.1};
InterProA0A027ZP55 
PFAMA0A027ZP55 
ProdomA0A027ZP55 
UniProtKBA0A0E0XZU2SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:AFS74565.1};
InterProA0A0E0XZU2 
PFAMA0A0E0XZU2 
ProdomA0A0E0XZU2 
UniProtKBA0A0E2U351SubName: Full=Small toxic polypeptide {ECO:0000313|EMBL:EZE22975.1};
InterProA0A0E2U351 
PFAMA0A0E2U351 
ProdomA0A0E2U351 
UniProtKBA0A0H4RTB8SubName: Full=Toxic polypeptide, small {ECO:0000313|EMBL:AKP84127.1};
InterProA0A0H4RTB8 
PFAMA0A0H4RTB8 
ProdomA0A0H4RTB8 
UniProtKBF8XI86SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EGU95555.1};
InterProF8XI86 
PFAMF8XI86 
ProdomF8XI86 
UniProtKBK4WR22SubName: Full=Small toxic polypeptide;
InterProK4WR22 
PFAMK4WR22 
ProdomK4WR22 
UniProtKBD7YF65SubName: Full=Hok/gef family protein;
InterProD7YF65 
PFAMD7YF65 
ProdomD7YF65 
UniProtKBD7ZMV2SubName: Full=Hok/gef family protein;
InterProD7ZMV2 
PFAMD7ZMV2 
ProdomD7ZMV2 
UniProtKBD8AWS1SubName: Full=Hok/gef family protein;
InterProD8AWS1 
PFAMD8AWS1 
ProdomD8AWS1 
UniProtKBD7XXY9SubName: Full=Hok/gef family protein;
InterProD7XXY9 
PFAMD7XXY9 
ProdomD7XXY9 
UniProtKBD8AS93SubName: Full=Hok/gef family protein;
InterProD8AS93 
PFAMD8AS93 
ProdomD8AS93 
UniProtKBD7XGD2SubName: Full=Hok/gef family protein;
InterProD7XGD2 
PFAMD7XGD2 
ProdomD7XGD2