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ModBase: Database of Comparative Protein Structure Models

Model Details Page

Sequence Information

Primary Database Link P77601
Original Database ID UP P77601
Organism Escherichia coli, Escherichia coli K-12
Annotation recname: full=putative hth-type
transcriptional regulator ykga;
Sequence Length 239

Dataset Information:

The newest dataset for this sequence was created on 2011-08-28. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region14-237
Protein Length239
Template PDB Code1d5yA
Template Region3-232
Sequence Identity30%
E-Value0
GA3411
MPQS1.18824
z-DOPE0.25
TSVMod MethodMSALL
TSVMod RMSD4.301
TSVMod NO350.737
Datasete_coli_83333_B1
ModPipe VersionSVN.r1372
Model Date2011-08-28

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1d5ycrystal structure of the e. coli rob transcription factor in complex with dna ; PFAM: PF00165 ; SCOP: 16055 16056 39532
DBALI1d5yA 
CATH1.10.10.60 Domain: 1d5yA01 Homeodomain-like (100%)
CATH1.10.10.60 Domain: 1d5yA02 Homeodomain-like (100%)
CATH3.20.80.10 Domain: 1d5yA03 Multidrug-efflux Transporter 1 Regulator Bmrr; Chain (63%)
JenaImageLibrary1d5y 
Target Sequence
UniProtKBQ2MCC1RecName: Full=Putative HTH-type transcriptional regulator YkgA;
InterProQ2MCC1 
PFAMQ2MCC1 
ProdomQ2MCC1 
UniProtKBP77601RecName: Full=Putative HTH-type transcriptional regulator YkgA;
InterProP77601 
PFAMP77601 
ProdomP77601 
UniProtKBQ2MCC1RecName: Full=Putative HTH-type transcriptional regulator YkgA;
InterProQ2MCC1 
PFAMQ2MCC1 
ProdomQ2MCC1 
UniProtKBP77601.1YKGA_ECOLI RecName: Full=Putative HTH-type transcriptional regulator ykgA
InterProP77601.1 
PFAMP77601.1 
ProdomP77601.1 
UniProtKBP77601RecName: Full=Putative HTH-type transcriptional regulator YkgA;
InterProP77601 
PFAMP77601 
ProdomP77601 
GenPept16128285 (NC_000913) putative ARAC-type regulatory protein [Escherichia coli K12]
GenPept7466873D64756 probable transcription regulator ykgA - Escherichia coli
GenPept2495375YKGA_ECOLI RecName: Full=Putative HTH-type transcriptional regulator ykgA
GenPept1786491putative ARAC-type regulatory protein; putative transcriptional regulator (AraC/XylS family
GenPept1657500Rob-like protein
GenBankAAB18028.1 Rob-like protein [Escherichia coli str. K-12 substr. MG1655]