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ModBase: Database of Comparative Protein Structure Models

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Sequence Information

Primary Database Link P77607.1
Original Database ID ref NP_414812.1
Organism Escherichia coli, Escherichia coli K-12, etc.
Annotation yagl_ecoli recname: full=uncharacterized
protein yagl
Sequence Length 232

Dataset Information:

The newest dataset for this sequence was created on 2016-11-09. If you think that a better template has been added to the template database since, you can start a new calculation.

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Model Information

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Target Region44-227
Protein Length232
Template PDB Code1gdtA
Template Region1-180
Sequence Identity17%
E-Value0
GA3410.99
MPQS0.912603
z-DOPE0.21
TSVMod MethodMTALL
TSVMod RMSD24.096
TSVMod NO350.446
DatasetMW-e_coli_D1
ModPipe VersionSVN.r1602
Model Date2016-11-09

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Cross-references

Show obsolete/secondary identifiers
Template Structure
PDB1gdtcrystal structure of a site-specific recombinase, gamma-delta resolvase complexed with a 34 bp cleavage site ; PFAM: PF00239 PF02796 ; SCOP: 16021 33348
DBALI1gdtA 
CATH3.40.50.1390 Domain: 1gdtA01 Rossmann fold (100%)
CATH1.20.5.40 Domain: 1gdtA02 Single alpha-helices involved in coiled-coils or other helix-helix interfaces (100%)
CATH1.10.10.60 Domain: 1gdtA03 Homeodomain-like (93%)
JenaImageLibrary1gdt 
Target Sequence
UniProtKBL4A8U4SubName: Full=Phage DNA-binding protein;
InterProL4A8U4 
PFAML4A8U4 
ProdomL4A8U4 
UniProtKBI0ZM23SubName: Full=DNA-binding protein;
InterProI0ZM23 
PFAMI0ZM23 
ProdomI0ZM23 
UniProtKBE6NX66SubName: Full=CP4-6 prophage DNA-binding protein;
InterProE6NX66 
PFAME6NX66 
ProdomE6NX66 
UniProtKBM2NAW7SubName: Full=DNA-binding protein;
InterProM2NAW7 
PFAMM2NAW7 
ProdomM2NAW7 
UniProtKBA0A0G3HTK3SubName: Full=CP4-6 prophage DNA-binding protein {ECO:0000313|EMBL:AKK16649.1};
InterProA0A0G3HTK3 
PFAMA0A0G3HTK3 
ProdomA0A0G3HTK3 
UniProtKBA0A090JQD5SubName: Full=CP4-6 prophage DNA-binding protein;SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:AKO55799.1};
InterProA0A090JQD5 
PFAMA0A090JQD5 
ProdomA0A090JQD5 
UniProtKBB1XE20SubName: Full=CP4-6 prophage; DNA-binding protein;
InterProB1XE20 
PFAMB1XE20 
ProdomB1XE20 
UniProtKBP77607RecName: Full=Uncharacterized protein YagL;
InterProP77607 
PFAMP77607 
ProdomP77607 
UniProtKBQ2MCE4RecName: Full=Uncharacterized protein YagL;
InterProQ2MCE4 
PFAMQ2MCE4 
ProdomQ2MCE4 
UniProtKBT9PX74SubName: Full=Phage DNA-binding protein;
InterProT9PX74 
PFAMT9PX74 
ProdomT9PX74 
UniProtKBF9R5R5SubName: Full=CP4-6 prophage; DNA-binding protein;
InterProF9R5R5 
PFAMF9R5R5 
ProdomF9R5R5 
UniProtKBB1XE20SubName: Full=CP4-6 prophage; DNA-binding protein;
InterProB1XE20 
PFAMB1XE20 
ProdomB1XE20 
UniProtKBA0A4U3JTG9SubName: Full=CP4-6 prophage DNA-binding protein {ECO:0000313|EMBL:VTQ19745.1}SubName: Full=Recombinase family protein {ECO:0000313|EMBL:TGI61025.1}
InterProA0A4U3JTG9 
PFAMA0A4U3JTG9 
ProdomA0A4U3JTG9 
UniProtKBA0A8F8DKQ4SubName: Full=Recombinase family protein {ECO:0000313|EMBL:QXZ36125.1}
InterProA0A8F8DKQ4 
PFAMA0A8F8DKQ4 
ProdomA0A8F8DKQ4 
UniProtKBA0A507W7N1SubName: Full=Recombinase family protein {ECO:0000313|EMBL:TQC94757.1}
InterProA0A507W7N1 
PFAMA0A507W7N1 
ProdomA0A507W7N1 
UniProtKBF9R5R5SubName: Full=CP4-6 prophage; DNA-binding protein;
InterProF9R5R5 
PFAMF9R5R5 
ProdomF9R5R5 
UniProtKBI0ZM23SubName: Full=DNA-binding protein;
InterProI0ZM23 
PFAMI0ZM23 
ProdomI0ZM23 
UniProtKBE6NX66SubName: Full=CP4-6 prophage; DNA-binding protein;
InterProE6NX66 
PFAME6NX66 
ProdomE6NX66 
UniProtKBQ2MCE4DNA-binding protein
InterProQ2MCE4 
PFAMQ2MCE4 
ProdomQ2MCE4 
UniProtKBA0A7B5MFC7SubName: Full=Recombinase family protein {ECO:0000313|EMBL:HAJ6404743.1}
InterProA0A7B5MFC7 
PFAMA0A7B5MFC7 
ProdomA0A7B5MFC7 
UniProtKBP77607RecName: Full=Uncharacterized protein YagL;
InterProP77607 
PFAMP77607 
ProdomP77607 
UniProtKBP77607.1YAGL_ECOLI RecName: Full=Uncharacterized protein yagL
InterProP77607.1 
PFAMP77607.1 
ProdomP77607.1 
UniProtKBQ2MCE4RecName: Full=Uncharacterized protein YagL;
InterProQ2MCE4 
PFAMQ2MCE4 
ProdomQ2MCE4 
RefSeqAP_000932.1 DNA-binding protein [Escherichia coli str. K-12 substr. W3110]
RefSeqYP_001729222.1 CP4-6 prophage; DNA-binding protein [Escherichia coli str. K-12 substr. DH10B]
RefSeqNP_414812.1 CP4-6 prophage; DNA-binding protein [Escherichia coli str. K-12 substr. MG1655]
GenPept817573639CP4-6 prophage, DNA-binding protein
GenPept899721327hypothetical protein ADS71_01430
GenPept899725681hypothetical protein ADZ27_01430
GenPept899730043hypothetical protein ADZ28_01430
GenPept932858198DNA-binding protein
GenPept664682713hypothetical protein HQ24_01380
GenPept89107152 DNA-binding protein [Escherichia coli str. K-12 substr. W3110]
GenPept85674422DNA-binding protein
GenPept802133881CP4-6 prophage; DNA-binding protein
GenPept7467007F64753 yagL protein - Escherichia coli (strain K-12)
GenPept732685765hypothetical protein EO53_16910
GenPept731471675CP4-6 prophage; DNA-binding protein
GenPept730583946CP4-6 prophage; DNA-binding protein
GenPept687675498CP4-6 prophage; DNA-binding protein
GenPept687671212CP4-6 prophage; DNA-binding protein
GenPept682117865CP4-6 prophage; DNA-binding protein
GenPept549811824CP4-6 prophage; DNA-binding protein
GenPept315134963CP4-6 prophage; DNA-binding protein
GenPept2495494YAGL_ECOLI RecName: Full=Uncharacterized protein yagL
GenPept1786474CP4-6 prophage; DNA-binding protein
GenPept170079902 CP4-6 prophage; DNA-binding protein [Escherichia coli str. K-12 substr. DH10B]
GenPept169887737CP4-6 prophage; DNA-binding protein
GenPept1657479hypothetical protein
GenPept808699066hypothetical protein SH05_05170
GenPept808703437hypothetical protein SH02_05125
GenPept827620915CP4-6 prophage DNA-binding protein
GenPept827617766CP4-6 prophage DNA-binding protein
GenPept817590202CP4-6 prophage, DNA-binding protein
GenPept817586061CP4-6 prophage, DNA-binding protein
GenPept817581920CP4-6 prophage, DNA-binding protein
GenPept817577781CP4-6 prophage, DNA-binding protein
GenPept808733691hypothetical protein SF31_05470
GenPept808729279hypothetical protein SH07_05155
GenPept808720958hypothetical protein SH04_05150
GenPept808716589hypothetical protein SH06_05470
GenPept808712177hypothetical protein SH03_05160
GenPept808707816hypothetical protein SH08_05170
GenPept16128263 CP4-6 prophage; DNA-binding protein [Escherichia coli str. K-12 substr. MG1655]
GenBankAAB18007.1 hypothetical protein [Escherichia coli str. K-12 substr. MG1655]
GenBankAAC73381.1 CP4-6 prophage; DNA-binding protein [Escherichia coli str. K-12 substr. MG1655]
GenBankACB01444.1 CP4-6 prophage; DNA-binding protein [Escherichia coli str. K-12 substr. DH10B]